Rorug02G0112000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014021
Physical Location & Seq
Reverse (-)
9579765 .. 9583262
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0112000.1

Sequence Viewer

Length: 1074 bp
ATGGCCTGCGTGACCGACGAGAGCTGGGTCGCGCTGCCCAGAATGCTATCGGAGCGTTTGTCTTTGAGGGAGGAAGAGGCCAAGGAGGAGGAGGAGCCCGGGTTTTTCGACTCCGAGTCCGCCGCGTACAGGTTGGAGAAGGTTTTTCCGGTGTACGCATTGGGGATTCAGAAACCCGAGTCCGAGTCCGACCCGGTTGTTGTGGCTGACAGTTCGGACGACCCGATTTGGGACGCTGTCAGGGAAGAGGCCAAGTTGGAGGCAGAGAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCGAGCATCTTGGCGCATGATTGTTTAGAGCAGGCGTTGGGGTTTGTTCTTGCAAACAGGTTGCAGAACCCGACACTTCTGGCTACTCAGCTGATGGATATATTCACTAATGTAATGATGCATGACAGAGACATTCAGCGATCTGCTCGGCTAGACGTGCAGGCGTTTAAAGAACGTGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTATTGTATCTCAAGGGTTACCTTGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGAGTCAAGGACGCAAAGTATTGGCCTTGGCATTACAAAGCCGAGTTAGCGAGGTGTTTGGAGTGGACATTCACCCTGCCTCAAAAATTGGAGAGGGAGTATTGTTGGATCATGGTACGGGTGTGGTTATTGGGGAAACTGCTGTTATAGGAAACAGAGTTTCATTGATGCAGGGTGTAACTTTGGGAGGAACTGGGAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTAATAGGAGCCAGTGCAACTATACTTGGGAATATAAAAATAGGTCGAGGAGCCATGATAGCTGCTTGTTCCCTTGTGCTTAAAGATGTCCCTCCACACAGCATGGTGGCAGGAATACCAGCAAAAGTGATTGGATATGTAGACGAAAAAGATCCTTCATTAACCATGAAGCATGATGCTACCAAAGAATTTTTTGAAAATGTAGCTGTTAAGTTCAGAGATGCAAGGTCTGCCGGAGGGCAGACTTCAGAAAAAAGTGACGGGAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

357

Amino Acids

38.75

Weight (kDa)

5.11

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SATase_N PF06426 76 - 179 1e-37 Serine acetyltransferase, N-terminal
Hexapep PF00132 260 - 293 1.3e-08 Bacterial transferase hexapeptide (six repeats)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23690
fragaria_vesca FvH4_1g14400
malus_domestica MD02G1157500.v1.1 MD15G1272100.v1.1
prunus_persica Prupe.7G146200_v2.0.a1
pyrus_communis pycom02g12450
rosa_chinensis RchiOBHm_Chr2g0103121
rosa_laevigata RLG00000017210
rosa_multiflora Rmu_sc0000388.1_g000007
rosa_roxburghii Rroxscaffold_2G00139910 Rroxscaffold_2G00140190
rosa_rugosa Rorug02G0112000
rosa_samantha Rh2AG160700 Rh2BG167400 Rh2CG167700 Rh2DG166300
rosa_wichuraiana Rw2G012580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 942
AccII CGCG 2 cut(s) 32, 125
AciI CCGC 2 cut(s) 120, 123
AclWI GGATC 3 cut(s) 470, 678, 947
AcsI RAATTY 1 cut(s) 989
AcuI CTGAAG 1 cut(s) 1032
AfaI GTAC 3 cut(s) 128, 155, 679
AfiI CCNNNNNNNGG 3 cut(s) 129, 229, 788
AgsI TTSAA 1 cut(s) 998
AhdI GACNNNNNGTC 1 cut(s) 115
AjiI CACGTC 1 cut(s) 454
AluBI AGCT 7 cut(s) 24, 288, 388, 482, 551, 863, 1007
AluI AGCT 7 cut(s) 24, 288, 388, 482, 551, 863, 1007
Alw21I GWGCWC 2 cut(s) 802, 1070
Alw26I GTCTC 1 cut(s) 420
Alw44I GTGCAC 1 cut(s) 798
AlwI GGATC 3 cut(s) 470, 678, 947
Ama87I CYCGRG 2 cut(s) 98, 176
AoxI GGCC 4 cut(s) 3, 78, 249, 585
ApaLI GTGCAC 1 cut(s) 798
ApeKI GCWGC 2 cut(s) 34, 863
ApoI RAATTY 1 cut(s) 989
AspLEI GCGC 2 cut(s) 34, 313
AsuC2I CCSGG 3 cut(s) 99, 100, 194
AsuHPI GGTGA 3 cut(s) 626, 782, 803
AvaI CYCGRG 2 cut(s) 98, 176
BaeGI GKGCMC 1 cut(s) 802
BaeI ACNNNNGTAYC 2 cut(s) 669, 702
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 802, 1070
BbvI GCAGC 2 cut(s) 21, 850
BccI CCATC 1 cut(s) 385
BcgI CGANNNNNNTGC 2 cut(s) 524, 558
BcnI CCSGG 3 cut(s) 99, 100, 194
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 1 cut(s) 449
BisI GCNGC 3 cut(s) 35, 123, 864
BlsI GCNGC 3 cut(s) 36, 124, 865
Bme1390I CCNGG 3 cut(s) 99, 100, 194
BmeRI GACNNNNNGTC 1 cut(s) 115
BmeT110I CYCGRG 2 cut(s) 98, 176
BmgBI CACGTC 1 cut(s) 454
BmiI GGNNCC 4 cut(s) 96, 273, 811, 853
BmrFI CCNGG 3 cut(s) 99, 100, 194
BmrI ACTGGG 1 cut(s) 765
BmsI GCATC 5 cut(s) 312, 405, 720, 967, 1012
BmuI ACTGGG 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 3 cut(s) 99, 100, 194
BsaJI CCNNGG 3 cut(s) 81, 98, 588
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 86, 116, 645, 675
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 229, 788
Bse1I ACTGG 2 cut(s) 760, 813
BseDI CCNNGG 3 cut(s) 81, 98, 588
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 3 cut(s) 129, 229, 788
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 2 cut(s) 760, 813
BseRI GAGGAG 4 cut(s) 101, 104, 107, 864
BseSI GKGCMC 1 cut(s) 802
BseXI GCAGC 2 cut(s) 21, 850
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 2 cut(s) 32, 125
BshFI GGCC 4 cut(s) 5, 80, 251, 587
BsiHKAI GWGCWC 2 cut(s) 802, 1070
BsiHKCI CYCGRG 2 cut(s) 98, 176
BsiSI CCGG 4 cut(s) 99, 149, 194, 1035
BslFI GGGAC 2 cut(s) 245, 875
BslI CCNNNNNNNGG 3 cut(s) 129, 229, 788
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 2 cut(s) 245, 875
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 4 cut(s) 5, 80, 251, 587
BsoBI CYCGRG 2 cut(s) 98, 176
Bsp1286I GDGCHC 3 cut(s) 99, 802, 1070
Bsp143I GATC 4 cut(s) 437, 475, 670, 952
BspACI CCGC 2 cut(s) 120, 123
BspANI GGCC 4 cut(s) 5, 80, 251, 587
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 2 cut(s) 32, 125
BspLI GGNNCC 4 cut(s) 96, 273, 811, 853
BspPI GGATC 3 cut(s) 470, 678, 947
BsrI ACTGG 2 cut(s) 760, 813
BssECI CCNNGG 3 cut(s) 81, 98, 588
BssMI GATC 4 cut(s) 437, 475, 670, 952
BssT1I CCWWGG 2 cut(s) 81, 588
Bst4CI ACNGT 4 cut(s) 212, 497, 561, 776
Bst6I CTCTTC 2 cut(s) 69, 240
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstC8I GCNNGC 4 cut(s) 7, 301, 330, 459
BstDEI CTNAG 1 cut(s) 384
BstEII GGTNACC 2 cut(s) 521, 770
BstF5I GGATG 1 cut(s) 778
BstFNI CGCG 2 cut(s) 32, 125
BstHHI GCGC 2 cut(s) 34, 313
BstKTI GATC 4 cut(s) 440, 478, 673, 955
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 4 cut(s) 437, 475, 670, 952
BstMWI GCNNNNNNNGC 6 cut(s) 43, 52, 454, 609, 860, 1031
BstPI GGTNACC 2 cut(s) 521, 770
BstSCI CCNGG 3 cut(s) 97, 98, 192
BstSLI GKGCMC 1 cut(s) 802
BstUI CGCG 2 cut(s) 32, 125
BstV1I GCAGC 2 cut(s) 21, 850
BstX2I RGATCY 1 cut(s) 952
BstYI RGATCY 1 cut(s) 952
BsuRI GGCC 4 cut(s) 5, 80, 251, 587
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 778
BtsIMutI CAGTG 2 cut(s) 557, 820
Cac8I GCNNGC 4 cut(s) 7, 301, 330, 459
CfoI GCGC 2 cut(s) 34, 313
Cfr9I CCCGGG 1 cut(s) 98
CseI GACGC 2 cut(s) 242, 582
Csp6I GTAC 3 cut(s) 127, 154, 678
CviAII CATG 7 cut(s) 314, 419, 674, 856, 904, 967, 974
CviQI GTAC 3 cut(s) 127, 154, 678
DdeI CTNAG 1 cut(s) 384
DpnI GATC 4 cut(s) 439, 477, 672, 954
DpnII GATC 4 cut(s) 437, 475, 670, 952
DraI TTTAAA 1 cut(s) 466
DriI GACNNNNNGTC 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 69, 240
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 2 cut(s) 69, 240
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 81, 588
Eco24I GRGCYC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 1032
Eco88I CYCGRG 2 cut(s) 98, 176
Eco91I GGTNACC 2 cut(s) 521, 770
EcoO65I GGTNACC 2 cut(s) 521, 770
EcoT14I CCWWGG 2 cut(s) 81, 588
EcoT22I ATGCAT 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 81, 588
FaeI CATG 7 cut(s) 317, 422, 677, 859, 907, 970, 977
FaqI GGGAC 2 cut(s) 245, 875
FatI CATG 7 cut(s) 313, 418, 673, 855, 903, 966, 973
FblI GTMKAC 1 cut(s) 942
Fnu4HI GCNGC 3 cut(s) 35, 123, 864
FokI GGATG 1 cut(s) 765
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 35, 123, 864
FspBI CTAG 1 cut(s) 449
GlaI GCGC 2 cut(s) 33, 312
GluI GCNGC 3 cut(s) 35, 123, 864
GsaI CCCAGC 1 cut(s) 28
HaeIII GGCC 4 cut(s) 5, 80, 251, 587
HapII CCGG 4 cut(s) 99, 149, 194, 1035
HgaI GACGC 2 cut(s) 242, 582
HhaI GCGC 2 cut(s) 34, 313
Hin1II CATG 7 cut(s) 317, 422, 677, 859, 907, 970, 977
Hin6I GCGC 2 cut(s) 32, 311
HinP1I GCGC 2 cut(s) 32, 311
HinfI GANTC 6 cut(s) 110, 116, 166, 179, 185, 565
HpaII CCGG 4 cut(s) 99, 149, 194, 1035
HphI GGTGA 3 cut(s) 626, 782, 803
Hpy166II GTNNAC 4 cut(s) 154, 628, 800, 943
Hpy188I TCNGA 8 cut(s) 52, 115, 171, 184, 190, 217, 1019, 1051
Hpy8I GTNNAC 4 cut(s) 154, 628, 800, 943
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 133, 262, 788, 966
HpyCH4III ACNGT 4 cut(s) 212, 497, 561, 776
HpyCH4IV ACGT 2 cut(s) 453, 472
HpyCH4V TGCA 9 cut(s) 350, 361, 418, 457, 535, 733, 800, 818, 1025
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 52, 454, 609, 860, 1031
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 2 cut(s) 453, 472
Hsp92II CATG 7 cut(s) 317, 422, 677, 859, 907, 970, 977
HspAI GCGC 2 cut(s) 32, 311
Kzo9I GATC 4 cut(s) 437, 475, 670, 952
LmnI GCTCC 6 cut(s) 52, 94, 271, 809, 851, 1065
Lsp1109I GCAGC 2 cut(s) 21, 850
LweI GCATC 5 cut(s) 312, 405, 720, 967, 1012
MaeI CTAG 1 cut(s) 449
MaeII ACGT 2 cut(s) 453, 472
MaeIII GTNAC 5 cut(s) 10, 521, 739, 770, 1058
MalI GATC 4 cut(s) 439, 477, 672, 954
MboI GATC 4 cut(s) 437, 475, 670, 952
MboII GAAGA 2 cut(s) 86, 257
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 3 cut(s) 99, 802, 1070
MluCI AATT 4 cut(s) 276, 648, 765, 989
MlyI GAGTC 5 cut(s) 104, 125, 188, 194, 574
MmeI TCCRAC 4 cut(s) 114, 213, 237, 648
Mph1103I ATGCAT 1 cut(s) 420
MseI TTAA 4 cut(s) 465, 882, 962, 1011
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 4 cut(s) 99, 149, 194, 1035
MspR9I CCNGG 3 cut(s) 99, 100, 194
Mva1269I GAATGC 1 cut(s) 48
MvnI CGCG 2 cut(s) 32, 125
MwoI GCNNNNNNNGC 6 cut(s) 43, 52, 454, 609, 860, 1031
NciI CCSGG 3 cut(s) 99, 100, 194
NdeII GATC 4 cut(s) 437, 475, 670, 952
NlaIII CATG 7 cut(s) 317, 422, 677, 859, 907, 970, 977
NlaIV GGNNCC 4 cut(s) 96, 273, 811, 853
NmeAIII GCCGAG 2 cut(s) 424, 629
NmuCI GTSAC 3 cut(s) 10, 770, 1058
NsiI ATGCAT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PctI GAATGC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 166
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 36, 124, 865
PleI GAGTC 5 cut(s) 104, 124, 187, 193, 573
PpsI GAGTC 5 cut(s) 104, 124, 187, 193, 573
PspEI GGTNACC 2 cut(s) 521, 770
PspFI CCCAGC 1 cut(s) 24
PspN4I GGNNCC 4 cut(s) 96, 273, 811, 853
PsuI RGATCY 1 cut(s) 952
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 388
RsaI GTAC 3 cut(s) 128, 155, 679
RsaNI GTAC 3 cut(s) 127, 154, 678
SaqAI TTAA 4 cut(s) 465, 882, 962, 1011
SatI GCNGC 3 cut(s) 35, 123, 864
Sau3AI GATC 4 cut(s) 437, 475, 670, 952
SchI GAGTC 5 cut(s) 104, 125, 188, 194, 574
ScrFI CCNGG 3 cut(s) 99, 100, 194
SduI GDGCHC 3 cut(s) 99, 802, 1070
SfaNI GCATC 5 cut(s) 312, 405, 720, 967, 1012
SmaI CCCGGG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 4 cut(s) 276, 648, 765, 989
SsiI CCGC 2 cut(s) 120, 123
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 3 cut(s) 97, 98, 192
StyI CCWWGG 2 cut(s) 81, 588
TaaI ACNGT 4 cut(s) 212, 497, 561, 776
TaiI ACGT 2 cut(s) 456, 475
TaqI TCGA 3 cut(s) 108, 544, 847
TaqII GACCGA 1 cut(s) 29
TasI AATT 4 cut(s) 276, 648, 765, 989
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 4 cut(s) 465, 882, 962, 1011
Tru9I TTAA 4 cut(s) 465, 882, 962, 1011
TscAI CASTG 2 cut(s) 564, 820
TseFI GTSAC 3 cut(s) 10, 770, 1058
TseI GCWGC 2 cut(s) 34, 863
Tsp45I GTSAC 3 cut(s) 10, 770, 1058
TspDTI ATGAA 3 cut(s) 714, 948, 983
TspMI CCCGGG 1 cut(s) 98
TspRI CASTG 2 cut(s) 564, 820
Tth111I GACNNNGTC 1 cut(s) 236
VneI GTGCAC 1 cut(s) 798
XapI RAATTY 1 cut(s) 989
XmaI CCCGGG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 942
XspI CTAG 1 cut(s) 449
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.