Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016025

Physical Location & Seq

Genomic Coordinates Reverse (-)

20144404 .. 20147389

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGAAGTTGAACTTGTACAGAGGAGCCTTAACAACCGTAACTGAATCCGCCGCTGAAATCCTGAAGCTGAACCAGAGGCTTGTTAAGCTTAATCGCTCGCATTGTTACGCAGAGACTCTCCAGTTTTTCACCCAAATCCATTCATCTCTGTCCATTAGACCAGACCACTACACGGTCTCGGCGGCCGTCACCGCCTGCGCGAAACTACGCGACATTTTTTTTGGGACCCAACTCCACGGCAACGCCGTCCGGTCCGGCCTCAAAGCCTACCCTCACGTGGCCAACCCGCTGCTCTCGCTTTATGCGAAAGCGGAAGATTTGAATGCTGTGAGATGGGTTTTTGATGAGATTGCAGATCCAGATGTTTATTCGTGGACGACGCTGCTGTCGGCTTGTGTTAAATTGGGGCATGTGGACTATGCATGTGAGGTGTTTGATAAAATGCCTCAGAAGGGTAATGTGGCGATTTGGAATGCAATGATTACCGGGTGCGCGGAGAATGGGGATGAGGAGGTTGCTTTTAGTTTGTTTTGTGAAATGCATAGGATGGGTGTTAAGCATGATAATTATAGTGTTGCTAGTGTGTTGAGTTTGTGTTGTTTGGAGTCGCTGGGATTTGGGAGGCAGGTGCATTGTTTAGTGATTAGAACTGGGTTTTTGGGAAGAGCTTCTGTTTTGAACGCTCTGCTTACTATGTATTTTAAGTGCGCAAGTGTTGCGGAGGCATTTGAGGTGTTTGAAGAAGCAGAAGATGGGGTGTATGATCAGATTACTTTTAATGTGATGATTGATGGTTTGGTGGGTGTGGGAAGAGATGAAGAGGCTTTGACAATGTTCAAACGGATGCAAGAGGCGTGTCTTAGGCCTACTGAGCTGACTTTTGTGAGTGTCATGAGCTCATGTTCAGATGCAAGAGTTGCTAACCATGTACATGTGCAGGCGATTAAGTTGGGTTTTGAAGCTTTCACTGCTGTGGGCAATGCAGCAATTACCATGTTTTCTGGTTGTGGGGATTGGCAAGCGGCTTACCTGGTTTTTCAGACATTGGAAGGGAAGGATCTTATATCATGGAATGCCATGATCTCGACTTATGCTCAAGTGAATGACACTGAATCAGCCGTTTTGGTCTATCTGCAAATGCAGAGGGCAGGAGAGAAACCAGATGAGTTTACTTATGGAAGTTTGTTGGCAAGCTCTGAGTATATTGACACCGTGCAAATGATTCAAGCTGTTGCACACAAAAATGGGCTTATCCTTAAAATCCAAGTTTTGAATGCAATGGTTTCTGCATATGCTAGGCAGGGTCAGATGATACTAGCCTATCAGACATTCCAAGATATCAGATGCAAAAATTTGATCACCTGGAATGCTATTATTTCTGGATTCCTGTTGAACGGAATGGTAAATGAAGGGTTAGAGCAATTTCATGAGCTGCTTGTGTCAGAACTCAGTCCAGATGTGTATACCCTGAGTATAATTGTAAGCATGTGTGCAAGCATAACATCCTTGAGAGATGGAAAACCAGTTCATGCCTACATTCTCAAATTTGGGTTTTCTAAACAACTGTGCTTAGGTAATGCCCTCATTACGATGTATGCTAAATGCGGGGTTTTAGATTGGTCAGTAAGAATGTTTGAAGCAATGAATGAAAAGGATATAGTCTCCTGGAATTCCCTGATATCAGCTTATGCACAACATGGGAAAGGAAAGGAAGCTGTTGATTGTTTTGAGGCGATGCAAGACTTGTCTTCCATCACACCAGACCAGGCGACCTTCACTGCAGTTCTTTCCGCTTGCAGTCATGCCGGTTTAGTTGATGATGGTACACGAATTTTCAATTCCATGATTAGTAATTACGGCTTTATGCCAGAAGTAGATCATTTTTCTTGTATAGTTGACCTTCTAGGTCGTGCCGGGTACCTTGATGAGGCAGAAACAGTGATAAACATCAAGGAAATTGAAGCACATCCACATATTTGGTGGACACTAATTAGTTCCTGTGCAGCACATGGAAATAAATGGAGAACTAAACTCCGCGGGCGAGGGTTTAGACCAGAGAGCGGCGCCATCAGTCCGGTTGAAAAGACACCTCCAAGGCTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

702

Amino Acids

77.6

Weight (kDa)

5.58

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	120 - 152	4.8e-06	PPR repeat family
PPR	PF01535	123 - 152	2.1e-06	PPR repeat
PPR_2	PF13041	153 - 200	1.5e-09	PPR repeat family
PPR	PF01535	156 - 185	3.6e-07	PPR repeat
PPR_2	PF13041	255 - 302	1.5e-06	PPR repeat family
PPR_2	PF13041	353 - 396	3.1e-09	PPR repeat family
PPR_2	PF13041	451 - 498	2.6e-08	PPR repeat family
PPR_2	PF13041	551 - 600	1.5e-11	PPR repeat family
PPR	PF01535	554 - 581	7.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49740
fragaria_vesca	FvH4_1g18310
malus_domestica	MD02G1190400.v1.1
prunus_persica	Prupe.6G216000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108961
rosa_laevigata	RLG00000017696
rosa_multiflora	Rmu_sc0014080.1_g000004 Rmu_sc0038162.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134680
rosa_rugosa	Rorug02G0156700
rosa_samantha	Rh2AG207300 Rh2BG218500 Rh2CG210500 Rh2DG213500
rosa_wichuraiana	Rw0G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	616
AasI	GACNNNNNNGTC	1 cut(s)	385
Acc16I	TGCGCA	1 cut(s)	709
Acc36I	ACCTGC	1 cut(s)	616
Acc65I	GGTACC	1 cut(s)	1917
AccB1I	GGYRCC	2 cut(s)	1917, 2063
AccBSI	CCGCTC	1 cut(s)	2061
AccI	GTMKAC	1 cut(s)	1463
AccII	CGCG	4 cut(s)	200, 210, 494, 2037
AclWI	GGATC	2 cut(s)	350, 1065
AcoI	YGGCCR	2 cut(s)	183, 279
AcsI	RAATTY	4 cut(s)	1351, 1544, 1669, 1830
AcuI	CTGAAG	1 cut(s)	83
AcvI	CACGTG	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	2064
AfaI	GTAC	4 cut(s)	17, 930, 1825, 1919
AfiI	CCNNNNNNNGG	5 cut(s)	172, 277, 452, 1927, 2060
AflIII	ACRYGT	1 cut(s)	931
AjnI	CCWGG	4 cut(s)	1029, 1361, 1664, 1764
AleI	CACNNNNGTG	1 cut(s)	971
AloI	GAACNNNNNNTCC	2 cut(s)	1509, 1541
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	3 cut(s)	107, 181, 1666
AlwI	GGATC	2 cut(s)	350, 1065
AoxI	GGCC	4 cut(s)	183, 256, 279, 863
ApeKI	GCWGC	5 cut(s)	289, 382, 983, 1432, 2003
ApoI	RAATTY	4 cut(s)	1351, 1544, 1669, 1830
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	667
Asp718I	GGTACC	1 cut(s)	1917
AspLEI	GCGC	4 cut(s)	200, 494, 710, 2066
AspS9I	GGNCC	2 cut(s)	225, 252
AsuC2I	CCSGG	2 cut(s)	487, 1915
AsuHPI	GGTGA	3 cut(s)	121, 181, 1351
AvaII	GGWCC	2 cut(s)	225, 252
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	1917, 2063
BanII	GRGCYC	1 cut(s)	899
BbrPI	CACGTG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	1740
Bbv12I	GWGCWC	1 cut(s)	899
BbvI	GCAGC	5 cut(s)	276, 369, 995, 1419, 2015
BccI	CCATC	8 cut(s)	327, 541, 746, 785, 1508, 1760, 1814, 2075
BceAI	ACGGC	5 cut(s)	170, 230, 253, 1103, 1873
BciT130I	CCWGG	4 cut(s)	1031, 1363, 1666, 1766
BclI	TGATCA	2 cut(s)	763, 1356
BcnI	CCSGG	2 cut(s)	487, 1915
BcoDI	GTCTC	3 cut(s)	107, 181, 1666
BfaI	CTAG	4 cut(s)	579, 1296, 1316, 1904
BfmI	CTRYAG	1 cut(s)	1779
BfoI	RGCGCY	1 cut(s)	2067
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	9 cut(s)	51, 183, 290, 383, 984, 1023, 1433, 2004, 2062
BlsI	GCNGC	9 cut(s)	52, 184, 291, 384, 985, 1024, 1434, 2005, 2063
Bme1390I	CCNGG	6 cut(s)	487, 1031, 1363, 1666, 1766, 1915
Bme18I	GGWCC	2 cut(s)	225, 252
BmgT120I	GGNCC	2 cut(s)	225, 252
BmiI	GGNNCC	5 cut(s)	25, 226, 227, 1919, 2065
BmrFI	CCNGG	6 cut(s)	487, 1031, 1363, 1666, 1766, 1915
BmrI	ACTGGG	1 cut(s)	660
BmsI	GCATC	4 cut(s)	834, 898, 1334, 1725
BmuI	ACTGGG	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	1740
BpmI	CTGGAG	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	1570
BpuEI	CTTGAG	2 cut(s)	1080, 1528
BpuMI	CCSGG	2 cut(s)	487, 1915
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	1946
BsaHI	GRCGYC	1 cut(s)	2064
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	235, 2035, 2093
BsaWI	WCCGGW	2 cut(s)	249, 2074
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 277, 452, 1927, 2060
Bse118I	RCCGGY	1 cut(s)	1805
Bse1I	ACTGG	3 cut(s)	121, 655, 1523
Bse3DI	GCAATG	4 cut(s)	483, 985, 1284, 1647
Bse8I	GATNNNNATC	1 cut(s)	1946
BseBI	CCWGG	4 cut(s)	1031, 1363, 1666, 1766
BseDI	CCNNGG	3 cut(s)	235, 2035, 2093
BseGI	GGATG	5 cut(s)	511, 552, 849, 1502, 1966
BseJI	GATNNNNATC	1 cut(s)	1946
BseLI	CCNNNNNNNGG	5 cut(s)	172, 277, 452, 1927, 2060
BseMI	GCAATG	4 cut(s)	483, 985, 1284, 1647
BseMII	CTCAG	5 cut(s)	461, 861, 1188, 1460, 1462
BseNI	ACTGG	3 cut(s)	121, 655, 1523
BseRI	GAGGAG	2 cut(s)	36, 524
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	5 cut(s)	276, 369, 995, 1419, 2015
BseYI	CCCAGC	1 cut(s)	610
BsgI	GTGCAG	2 cut(s)	956, 2022
Bsh1236I	CGCG	4 cut(s)	200, 210, 494, 2037
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	4 cut(s)	185, 258, 281, 865
BshNI	GGYRCC	2 cut(s)	1917, 2063
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	6 cut(s)	250, 255, 486, 1806, 1914, 2075
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	5 cut(s)	172, 277, 452, 1927, 2060
BsmAI	GTCTC	3 cut(s)	107, 181, 1666
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	5 cut(s)	328, 478, 1078, 1279, 1372
BsnI	GGCC	4 cut(s)	185, 258, 281, 865
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp1407I	TGTACA	2 cut(s)	15, 928
Bsp143I	GATC	6 cut(s)	355, 763, 1057, 1080, 1356, 1876
BspANI	GGCC	4 cut(s)	185, 258, 281, 865
BspCNI	CTCAG	5 cut(s)	460, 862, 1189, 1461, 1461
BspFNI	CGCG	4 cut(s)	200, 210, 494, 2037
BspHI	TCATGA	2 cut(s)	891, 1426
BspLI	GGNNCC	5 cut(s)	25, 226, 227, 1919, 2065
BspMAI	CTGCAG	1 cut(s)	1783
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	350, 1065
BspQI	GCTCTTC	1 cut(s)	658
BspT107I	GGYRCC	2 cut(s)	1917, 2063
BspTNI	GGTCTC	1 cut(s)	181
BsrBI	CCGCTC	1 cut(s)	2061
BsrDI	GCAATG	4 cut(s)	483, 985, 1284, 1647
BsrFI	RCCGGY	1 cut(s)	1805
BsrGI	TGTACA	2 cut(s)	15, 928
BsrI	ACTGG	3 cut(s)	121, 655, 1523
BssAI	RCCGGY	1 cut(s)	1805
BssECI	CCNNGG	3 cut(s)	235, 2035, 2093
BssMI	GATC	6 cut(s)	355, 763, 1057, 1080, 1356, 1876
BssNAI	GTATAC	1 cut(s)	1464
BssNI	GRCGYC	1 cut(s)	2064
BssT1I	CCWWGG	1 cut(s)	2093
Bst1107I	GTATAC	1 cut(s)	1464
Bst2UI	CCWGG	4 cut(s)	1031, 1363, 1666, 1766
Bst4CI	ACNGT	5 cut(s)	37, 175, 1213, 1566, 1939
Bst6I	CTCTTC	3 cut(s)	658, 805, 813
BstACI	GRCGYC	1 cut(s)	2064
BstAPI	GCANNNNNTGC	2 cut(s)	716, 917
BstAUI	TGTACA	2 cut(s)	15, 928
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	8 cut(s)	98, 196, 939, 1020, 1192, 1495, 1795, 2039
BstDEI	CTNAG	7 cut(s)	447, 860, 870, 1197, 1448, 1469, 1570
BstDSI	CCRYGG	2 cut(s)	235, 2035
BstENI	CCTNNNNNAGG	1 cut(s)	1925
BstF5I	GGATG	5 cut(s)	511, 552, 849, 1502, 1966
BstFNI	CGCG	4 cut(s)	200, 210, 494, 2037
BstH2I	RGCGCY	1 cut(s)	2067
BstHHI	GCGC	4 cut(s)	200, 494, 710, 2066
BstKTI	GATC	6 cut(s)	358, 766, 1060, 1083, 1359, 1879
BstMAI	GTCTC	3 cut(s)	107, 181, 1666
BstMBI	GATC	6 cut(s)	355, 763, 1057, 1080, 1356, 1876
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	7 cut(s)	85, 191, 295, 716, 871, 917, 968
BstNI	CCWGG	4 cut(s)	1031, 1363, 1666, 1766
BstNSI	RCATGY	4 cut(s)	413, 426, 935, 1489
BstSCI	CCNGG	6 cut(s)	485, 1029, 1361, 1664, 1764, 1913
BstSFI	CTRYAG	1 cut(s)	1779
BstUI	CGCG	4 cut(s)	200, 210, 494, 2037
BstV1I	GCAGC	5 cut(s)	276, 369, 995, 1419, 2015
BstV2I	GAAGAC	1 cut(s)	1740
BstX2I	RGATCY	2 cut(s)	355, 1057
BstXI	CCANNNNNNTGG	1 cut(s)	1977
BstYI	RGATCY	2 cut(s)	355, 1057
BstZ17I	GTATAC	1 cut(s)	1464
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	185, 258, 281, 865
BtgI	CCRYGG	2 cut(s)	235, 2035
BtgZI	GCGATG	1 cut(s)	1748
BtsCI	GGATG	5 cut(s)	511, 552, 849, 1502, 1966
BtsI	GCAGTG	2 cut(s)	966, 1776
BtsIMutI	CAGTG	4 cut(s)	966, 1107, 1776, 1944
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	8 cut(s)	98, 196, 939, 1020, 1192, 1495, 1795, 2039
CciI	TCATGA	2 cut(s)	891, 1426
CfoI	GCGC	4 cut(s)	200, 494, 710, 2066
Cfr10I	RCCGGY	1 cut(s)	1805
Cfr13I	GGNCC	2 cut(s)	225, 252
Cfr42I	CCGCGG	1 cut(s)	2038
CpoI	CGGWCCG	1 cut(s)	252
CseI	GACGC	1 cut(s)	388
CsiI	ACCWGGT	1 cut(s)	1029
Csp6I	GTAC	4 cut(s)	16, 929, 1824, 1918
CspI	CGGWCCG	1 cut(s)	252
CviQI	GTAC	4 cut(s)	16, 929, 1824, 1918
DdeI	CTNAG	7 cut(s)	447, 860, 870, 1197, 1448, 1469, 1570
DinI	GGCGCC	1 cut(s)	2065
DpnI	GATC	6 cut(s)	357, 765, 1059, 1082, 1358, 1878
DpnII	GATC	6 cut(s)	355, 763, 1057, 1080, 1356, 1876
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	2 cut(s)	183, 279
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	658, 805, 813
EarI	CTCTTC	3 cut(s)	658, 805, 813
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	897
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	2093
Eco147I	AGGCCT	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	899
Eco31I	GGTCTC	1 cut(s)	181
Eco32I	GATATC	2 cut(s)	1339, 1680
Eco47I	GGWCC	2 cut(s)	225, 252
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	83
Eco72I	CACGTG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	897
EcoNI	CCTNNNNNAGG	1 cut(s)	1925
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	1669
EcoRII	CCWGG	4 cut(s)	1029, 1361, 1664, 1764
EcoRV	GATATC	2 cut(s)	1339, 1680
EcoT14I	CCWWGG	1 cut(s)	2093
EcoT22I	ATGCAT	2 cut(s)	424, 543
EcoT38I	GRGCYC	1 cut(s)	899
EgeI	GGCGCC	1 cut(s)	2065
EheI	GGCGCC	1 cut(s)	2065
ErhI	CCWWGG	1 cut(s)	2093
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	238
FauI	CCCGC	3 cut(s)	294, 1598, 2030
FauNDI	CATATG	1 cut(s)	1291
FbaI	TGATCA	2 cut(s)	763, 1356
FblI	GTMKAC	1 cut(s)	1463
Fnu4HI	GCNGC	9 cut(s)	51, 183, 290, 383, 984, 1023, 1433, 2004, 2062
FokI	GGATG	5 cut(s)	518, 559, 856, 1489, 1953
FriOI	GRGCYC	1 cut(s)	899
Fsp4HI	GCNGC	9 cut(s)	51, 183, 290, 383, 984, 1023, 1433, 2004, 2062
FspBI	CTAG	4 cut(s)	579, 1296, 1316, 1904
FspI	TGCGCA	1 cut(s)	709
GlaI	GCGC	4 cut(s)	199, 493, 709, 2065
GluI	GCNGC	9 cut(s)	51, 183, 290, 383, 984, 1023, 1433, 2004, 2062
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	104
HaeII	RGCGCY	1 cut(s)	2067
HaeIII	GGCC	4 cut(s)	185, 258, 281, 865
HapII	CCGG	6 cut(s)	250, 255, 486, 1806, 1914, 2075
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	4 cut(s)	200, 494, 710, 2066
Hin1I	GRCGYC	1 cut(s)	2064
Hin6I	GCGC	4 cut(s)	198, 492, 708, 2064
HinP1I	GCGC	4 cut(s)	198, 492, 708, 2064
HincII	GTYRAC	1 cut(s)	1897
HindII	GTYRAC	1 cut(s)	1897
HindIII	AAGCTT	2 cut(s)	86, 960
HinfI	GANTC	6 cut(s)	44, 115, 605, 1112, 1222, 1383
HpaII	CCGG	6 cut(s)	250, 255, 486, 1806, 1914, 2075
HphI	GGTGA	3 cut(s)	121, 181, 1351
Hpy166II	GTNNAC	7 cut(s)	375, 415, 1170, 1464, 1826, 1897, 1983
Hpy188I	TCNGA	9 cut(s)	450, 768, 907, 1041, 1198, 1308, 1326, 1343, 1444
Hpy188III	TCNNGA	7 cut(s)	61, 359, 892, 1084, 1380, 1427, 1454
Hpy8I	GTNNAC	7 cut(s)	375, 415, 1170, 1464, 1826, 1897, 1983
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	6 cut(s)	445, 1043, 1048, 1403, 1783, 1910
HpyCH4III	ACNGT	5 cut(s)	37, 175, 1213, 1566, 1939
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	7 cut(s)	85, 191, 295, 716, 871, 917, 968
HpyF3I	CTNAG	7 cut(s)	447, 860, 870, 1197, 1448, 1469, 1570
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	2064
HspAI	GCGC	4 cut(s)	198, 492, 708, 2064
KasI	GGCGCC	1 cut(s)	2063
KflI	GGGWCCC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	1921
Ksp22I	TGATCA	2 cut(s)	763, 1356
KspI	CCGCGG	1 cut(s)	2038
Kzo9I	GATC	6 cut(s)	355, 763, 1057, 1080, 1356, 1876
LguI	GCTCTTC	1 cut(s)	658
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	5 cut(s)	276, 369, 995, 1419, 2015
LweI	GCATC	4 cut(s)	834, 898, 1334, 1725
MabI	ACCWGGT	1 cut(s)	1029
MaeI	CTAG	4 cut(s)	579, 1296, 1316, 1904
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	37, 104, 187
MalI	GATC	6 cut(s)	357, 765, 1059, 1082, 1358, 1878
MbiI	CCGCTC	1 cut(s)	2061
MboI	GATC	6 cut(s)	355, 763, 1057, 1080, 1356, 1876
MboII	GAAGA	7 cut(s)	326, 675, 752, 761, 822, 830, 1740
MflI	RGATCY	2 cut(s)	355, 1057
MhlI	GDGCHC	1 cut(s)	899
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
Mly113I	GGCGCC	1 cut(s)	2064
MlyI	GAGTC	2 cut(s)	109, 614
Mox20I	TGGCCA	1 cut(s)	281
Mph1103I	ATGCAT	2 cut(s)	424, 543
MroXI	GAANNNNTTC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	9 cut(s)	29, 84, 90, 399, 555, 702, 777, 945, 1257
MslI	CAYNNNNRTG	4 cut(s)	930, 971, 1242, 1589
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	3 cut(s)	53, 289, 2037
MspI	CCGG	6 cut(s)	250, 255, 486, 1806, 1914, 2075
MspR9I	CCNGG	6 cut(s)	487, 1031, 1363, 1666, 1766, 1915
Mva1269I	GAATGC	5 cut(s)	328, 478, 1078, 1279, 1372
MvaI	CCWGG	4 cut(s)	1031, 1363, 1666, 1766
MvnI	CGCG	4 cut(s)	200, 210, 494, 2037
MwoI	GCNNNNNNNGC	7 cut(s)	85, 191, 295, 716, 871, 917, 968
NarI	GGCGCC	1 cut(s)	2064
NciI	CCSGG	2 cut(s)	487, 1915
NdeI	CATATG	1 cut(s)	1291
NdeII	GATC	6 cut(s)	355, 763, 1057, 1080, 1356, 1876
NlaIV	GGNNCC	5 cut(s)	25, 226, 227, 1919, 2065
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	187
NsbI	TGCGCA	1 cut(s)	709
NsiI	ATGCAT	2 cut(s)	424, 543
NspI	RCATGY	4 cut(s)	413, 426, 935, 1489
OliI	CACNNNNGTG	1 cut(s)	971
PagI	TCATGA	2 cut(s)	891, 1426
PaqCI	CACCTGC	1 cut(s)	616
PceI	AGGCCT	1 cut(s)	865
PciI	ACATGT	1 cut(s)	931
PciSI	GCTCTTC	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 302
PctI	GAATGC	5 cut(s)	328, 478, 1078, 1279, 1372
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	4 cut(s)	44, 1112, 1222, 1383
PfoI	TCCNGGA	1 cut(s)	1664
PkrI	GCNGC	9 cut(s)	52, 184, 291, 384, 985, 1024, 1434, 2005, 2063
PleI	GAGTC	2 cut(s)	109, 613
PluTI	GGCGCC	1 cut(s)	2067
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	2 cut(s)	109, 613
Ppu21I	YACGTR	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	225
PscI	ACATGT	1 cut(s)	931
Psp124BI	GAGCTC	1 cut(s)	899
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	4 cut(s)	1029, 1361, 1664, 1764
PspCI	CACGTG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	4 cut(s)	1029, 1361, 1664, 1764
PspN4I	GGNNCC	5 cut(s)	25, 226, 227, 1919, 2065
PspPI	GGNCC	2 cut(s)	225, 252
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	1783
PsuI	RGATCY	2 cut(s)	355, 1057
RsaI	GTAC	4 cut(s)	17, 930, 1825, 1919
RsaNI	GTAC	4 cut(s)	16, 929, 1824, 1918
RseI	CAYNNNNRTG	4 cut(s)	930, 971, 1242, 1589
Rsr2I	CGGWCCG	1 cut(s)	252
RsrII	CGGWCCG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	899
SacII	CCGCGG	1 cut(s)	2038
SapI	GCTCTTC	1 cut(s)	658
SaqAI	TTAA	9 cut(s)	29, 84, 90, 399, 555, 702, 777, 945, 1257
SatI	GCNGC	9 cut(s)	51, 183, 290, 383, 984, 1023, 1433, 2004, 2062
Sau3AI	GATC	6 cut(s)	355, 763, 1057, 1080, 1356, 1876
Sau96I	GGNCC	2 cut(s)	225, 252
SchI	GAGTC	2 cut(s)	109, 614
ScrFI	CCNGG	6 cut(s)	487, 1031, 1363, 1666, 1766, 1915
SduI	GDGCHC	1 cut(s)	899
SexAI	ACCWGGT	1 cut(s)	1029
SfaNI	GCATC	4 cut(s)	834, 898, 1334, 1725
SfcI	CTRYAG	1 cut(s)	1779
SfoI	GGCGCC	1 cut(s)	2065
Sfr303I	CCGCGG	1 cut(s)	2038
SgrBI	CCGCGG	1 cut(s)	2038
SinI	GGWCC	2 cut(s)	225, 252
SmiMI	CAYNNNNRTG	4 cut(s)	930, 971, 1242, 1589
SmlI	CTYRAG	2 cut(s)	1095, 1507
SmoI	CTYRAG	2 cut(s)	1095, 1507
SseBI	AGGCCT	1 cut(s)	865
SspDI	GGCGCC	1 cut(s)	2063
SspMI	CTAG	4 cut(s)	579, 1296, 1316, 1904
SstI	GAGCTC	1 cut(s)	899
StuI	AGGCCT	1 cut(s)	865
StyD4I	CCNGG	6 cut(s)	485, 1029, 1361, 1664, 1764, 1913
StyI	CCWWGG	1 cut(s)	2093
TaaI	ACNGT	5 cut(s)	37, 175, 1213, 1566, 1939
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	1085
TatI	WGTACW	2 cut(s)	15, 928
TauI	GCSGC	4 cut(s)	53, 185, 1025, 2064
TfiI	GAWTC	4 cut(s)	44, 1112, 1222, 1383
Tru1I	TTAA	9 cut(s)	29, 84, 90, 399, 555, 702, 777, 945, 1257
Tru9I	TTAA	9 cut(s)	29, 84, 90, 399, 555, 702, 777, 945, 1257
TscAI	CASTG	4 cut(s)	973, 1114, 1783, 1944
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	5 cut(s)	289, 382, 983, 1432, 2003
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	8 cut(s)	17, 132, 831, 1415, 1422, 1517, 1658, 1662
TspGWI	ACGGA	2 cut(s)	856, 1410
TspRI	CASTG	4 cut(s)	973, 1114, 1783, 1944
VpaK11BI	GGWCC	2 cut(s)	225, 252
XagI	CCTNNNNNAGG	1 cut(s)	1925
XapI	RAATTY	4 cut(s)	1351, 1544, 1669, 1830
XceI	RCATGY	4 cut(s)	413, 426, 935, 1489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1977
XmiI	GTMKAC	1 cut(s)	1463
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	4 cut(s)	579, 1296, 1316, 1904
Zsp2I	ATGCAT	2 cut(s)	424, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.