Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016025

Physical Location & Seq

Genomic Coordinates Forward (+)

72213238 .. 72215439

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGAAGTTCAACTTGTACAGAGGAGCCTTAACAACCATAACTGAATTCGCCGCTGAAATCCTGAAGCTGAACCAGAGGCTTGTTAAGCTTAATCGCTCGCATTGTTACGCAGAGACTCTCCAGCTTTTCACCCAAATCCATTCATCTCTGTCCATTAGACCAGACCACTACACGGTCTCGGCGGCCGTCACCGCCTGCGCGAAATTACGCGACATTTTTTTTGGGACCCAACTCCACGGCAACGCCGTCCGGTCCGGCCTCAAAGCCTACCCTCACGTGGCCAACCCGCTGCTCTCGCTTTATGCGAAAGCGCAAGATTTGAATGCTGTGACATGGGTGTTTGATGAGATTGCAGACCCAGATGTTTATTCGTGGACGACGCTGCTGTCGGCTTGTGTGAAATTGGGGCATGTGGACTATGCATGTGAGGTGTTCGATAAAGTGCCTCAAAAGGGTAATGTGGCGATTTGGAATGCGATGATTACCGGATGCGCGGAGAATGGGGATGAGGAGGCTGCTTTTAGTTTGTTTTGTGAAATGCATTGGATGGGTGTTAAGCATGATAATTTTAGTGTTGCTAGTGTGTTGAGTTTGTGTTGTTTGGAGTCGCTGGGATTTGGGAGGCAGGTGCATTGTTTAGTGATTAGAACCGGGTTTTTGGGAAGAGCGTCTGTTGTGAACGCTCTGCTTACTATGTATTTTAACTGCACAAGTGTTGCGGAGGCATTTGAGGTGTTTGAAGAAGCAGAGGATGGGGTGTATGATCAGATTACTTTTAATGTGATGATTGATGGTTTGGTGGGTGTGGGAAGAGATGAAGAGGCTTTGACAATGTTCAAAGGGATGCAAGAGGCGTGTCTTAGGCCTACTGAGCTGACTTTTGTGAGTGTCATGAGCTCATGTTCAGCTGCAAGAGTTGCTAACCATGTACATGCGCAGGCGATTAAGTTGGGTTTTGAAGCTTTCACTGCTGTGGGCAATGCAGCAATTACCATGTTTTCTGGTTGTGGGGATTGGCAAGCAGCTTACCTGGTTTTTCAGACATTGGAAGGAAAGGATCTTATATCATGGAATGCCATGATCTCGACTTATGCTCAAGTGAATGACAGGGAATCAGCCGTTTTGGTCTATCTGCAAATGCAGAGGGCAGGAGAGAAGCCAGATGAGTTTACTTATGGAAGTTTGTTGGCAAGCTCTGAGTATATTGAGACTGTGCAAATGATTCAGGCTGTTGCACACAAAAATGGGCTTATCCTTAAAATCCAAGTTTCGAATGCAATGCTTTCTGCATATGCTAGGCAGGGTCAGATGAATCTAGTTTATCAGACATTCCAAGATATCAAATACAAAAATTTGATCACCTGGAATGCTATTATTTCTGGATTCCTGTTGAATGGAATGGTAAATGAAGGGTTAGAGCAATTTCATGAGCTGCTTGTGTCAGAACTCAGTCCAGATGTGTATACCCTGAGTATAATTGTAAGCATGTGTGCAAGCATAACATCCTTGAGAGATGGAAAACCAGTTCATGCCTACATTCTCAAATTTGGGTTTTCTAAACAACTGTGCTTAGGTAATGCCCTCATTACGATGTATGCTAAATGCGGGGTTTTAGATTGGTCGGTAAGAGTGTTTGAAGCAATGAATGAAAAGGATATAGTCTCCTGGAATGCCCTGGTATCAGCTTATGCACAACATGGGAAAGGAAAGGAAGCTGTTGATTGTTTTGAGGCGATGCAAGACTTGTCTTCCATCACACCAGACCAGGCAACCTTCACTGCAGTTCTTTCCGCTTGCAGTCATGCCGGTTTAGTTGATGATGGTACACGAATTTTCAATTCCATGATTAGTAATTACGGCTTTATGCCAGAAGTAGATCATTTTTCTTGTATAGTTGACCTTCTAGGTCGTGCTGGGTACCTTGATGAGGCAGAAACAGTGATAGACAGCAAGGAAATTGAAGCACATCCAAATATTTGGTGGACACTAATTAGTTCCTGTGCAGCACATGGTAATTTAAGACTAGGAAGAATAGTTGCTGGATATCTTCTCGAAACTGAACAAAATAATCCATCAGTTTATGTGCTTTTGGCAAGTATATACGCAGCCGCTGGTCAATGGGAAGAAGCAGCTAATGTGAGAGAATTAATGAACACAACTGGGAAGGCGAAGACACCTGGATGCAGTTGGATTAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

733

Amino Acids

80.72

Weight (kDa)

5.16

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	153 - 200	3.2e-08	PPR repeat family
PPR	PF01535	156 - 185	8.8e-07	PPR repeat
PPR_2	PF13041	255 - 301	7.9e-06	PPR repeat family
PPR_2	PF13041	353 - 396	1.2e-08	PPR repeat family
PPR_2	PF13041	451 - 498	2.7e-08	PPR repeat family
PPR_2	PF13041	551 - 600	1.5e-10	PPR repeat family
PPR	PF01535	554 - 581	9.5e-07	PPR repeat
E_motif	PF20431	670 - 732	1.8e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49740
fragaria_vesca	FvH4_1g18310
malus_domestica	MD02G1190400.v1.1
prunus_persica	Prupe.6G216000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108961
rosa_laevigata	RLG00000017696
rosa_multiflora	Rmu_sc0014080.1_g000004 Rmu_sc0038162.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134680
rosa_rugosa	Rorug02G0156700
rosa_samantha	Rh2AG207300 Rh2BG218500 Rh2CG210500 Rh2DG213500
rosa_wichuraiana	Rw0G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	616
AasI	GACNNNNNNGTC	1 cut(s)	385
Acc16I	TGCGCA	1 cut(s)	936
Acc36I	ACCTGC	1 cut(s)	616
Acc65I	GGTACC	1 cut(s)	1917
AccB1I	GGYRCC	1 cut(s)	1917
AccI	GTMKAC	1 cut(s)	1463
AccII	CGCG	3 cut(s)	200, 210, 494
AciI	CCGC	9 cut(s)	51, 182, 192, 287, 494, 719, 1605, 1791, 2109
AclWI	GGATC	1 cut(s)	1065
AcoI	YGGCCR	2 cut(s)	183, 279
AcsI	RAATTY	4 cut(s)	44, 1351, 1544, 1830
AcuI	CTGAAG	1 cut(s)	83
AcvI	CACGTG	1 cut(s)	277
AfaI	GTAC	4 cut(s)	17, 930, 1825, 1919
AfiI	CCNNNNNNNGG	4 cut(s)	172, 277, 452, 1927
AgsI	TTSAA	9 cut(s)	10, 322, 740, 838, 959, 1393, 1637, 1837, 1961
AjnI	CCWGG	6 cut(s)	1029, 1361, 1664, 1674, 1764, 2176
AleI	CACNNNNGTG	1 cut(s)	971
AloI	GAACNNNNNNTCC	2 cut(s)	1509, 1541
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	4 cut(s)	107, 181, 1202, 1666
AlwI	GGATC	1 cut(s)	1065
AlwNI	CAGNNNCTG	1 cut(s)	2111
AoxI	GGCC	4 cut(s)	183, 256, 279, 863
ApoI	RAATTY	4 cut(s)	44, 1351, 1544, 1830
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AseI	ATTAAT	2 cut(s)	2147, 2193
Asp718I	GGTACC	1 cut(s)	1917
AspLEI	GCGC	4 cut(s)	200, 313, 494, 937
AspS9I	GGNCC	2 cut(s)	225, 252
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	3 cut(s)	121, 181, 1351
AsuII	TTCGAA	1 cut(s)	1271
AvaII	GGWCC	2 cut(s)	225, 252
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	1917
BanII	GRGCYC	1 cut(s)	899
BbrPI	CACGTG	1 cut(s)	277
BbsI	GAAGAC	2 cut(s)	1740, 2177
Bbv12I	GWGCWC	1 cut(s)	899
BccI	CCATC	7 cut(s)	541, 746, 785, 1508, 1760, 1814, 2080
BceAI	ACGGC	5 cut(s)	170, 230, 253, 1103, 1873
BcgI	CGANNNNNNTGC	2 cut(s)	1261, 1295
BciT130I	CCWGG	6 cut(s)	1031, 1363, 1666, 1676, 1766, 2178
BclI	TGATCA	2 cut(s)	763, 1356
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	4 cut(s)	107, 181, 1202, 1666
BfaI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
BfmI	CTRYAG	1 cut(s)	1779
BfuAI	ACCTGC	1 cut(s)	616
Bme1390I	CCNGG	7 cut(s)	652, 1031, 1363, 1666, 1676, 1766, 2178
Bme18I	GGWCC	2 cut(s)	225, 252
BmgT120I	GGNCC	2 cut(s)	225, 252
BmiI	GGNNCC	4 cut(s)	25, 226, 227, 1919
BmrFI	CCNGG	7 cut(s)	652, 1031, 1363, 1666, 1676, 1766, 2178
BmrI	ACTGGG	1 cut(s)	2169
BmsI	GCATC	4 cut(s)	479, 834, 1725, 2171
BmuI	ACTGGG	1 cut(s)	2169
BpiI	GAAGAC	2 cut(s)	1740, 2177
BpmI	CTGGAG	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	1570
Bpu14I	TTCGAA	1 cut(s)	1271
BpuEI	CTTGAG	2 cut(s)	1080, 1528
BpuMI	CCSGG	1 cut(s)	652
BsaAI	YACGTR	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	235, 1674
BsaWI	WCCGGW	2 cut(s)	249, 485
Bsc4I	CCNNNNNNNGG	4 cut(s)	172, 277, 452, 1927
Bse118I	RCCGGY	1 cut(s)	1805
Bse1I	ACTGG	2 cut(s)	1523, 2164
Bse3DI	GCAATG	3 cut(s)	985, 1284, 1647
BseBI	CCWGG	6 cut(s)	1031, 1363, 1666, 1676, 1766, 2178
BseDI	CCNNGG	2 cut(s)	235, 1674
BseGI	GGATG	8 cut(s)	494, 511, 552, 757, 849, 1502, 1966, 2186
BseLI	CCNNNNNNNGG	4 cut(s)	172, 277, 452, 1927
BseMI	GCAATG	3 cut(s)	985, 1284, 1647
BseMII	CTCAG	4 cut(s)	861, 1188, 1460, 1462
BseNI	ACTGG	2 cut(s)	1523, 2164
BseRI	GAGGAG	2 cut(s)	36, 524
BseX3I	CGGCCG	1 cut(s)	183
BseYI	CCCAGC	2 cut(s)	610, 1913
BsgI	GTGCAG	2 cut(s)	691, 2022
Bsh1236I	CGCG	3 cut(s)	200, 210, 494
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	4 cut(s)	185, 258, 281, 865
BshNI	GGYRCC	1 cut(s)	1917
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	5 cut(s)	250, 255, 486, 651, 1806
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	4 cut(s)	172, 277, 452, 1927
BsmAI	GTCTC	4 cut(s)	107, 181, 1202, 1666
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	6 cut(s)	328, 478, 1078, 1279, 1372, 1675
BsnI	GGCC	4 cut(s)	185, 258, 281, 865
Bso31I	GGTCTC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	1271
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp1407I	TGTACA	2 cut(s)	15, 928
Bsp143I	GATC	5 cut(s)	763, 1057, 1080, 1356, 1876
BspACI	CCGC	9 cut(s)	51, 182, 192, 287, 494, 719, 1605, 1791, 2109
BspANI	GGCC	4 cut(s)	185, 258, 281, 865
BspCNI	CTCAG	4 cut(s)	862, 1189, 1461, 1461
BspFNI	CGCG	3 cut(s)	200, 210, 494
BspHI	TCATGA	2 cut(s)	891, 1426
BspLI	GGNNCC	4 cut(s)	25, 226, 227, 1919
BspMAI	CTGCAG	1 cut(s)	1783
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	1065
BspQI	GCTCTTC	1 cut(s)	658
BspT104I	TTCGAA	1 cut(s)	1271
BspT107I	GGYRCC	1 cut(s)	1917
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	3 cut(s)	985, 1284, 1647
BsrFI	RCCGGY	1 cut(s)	1805
BsrGI	TGTACA	2 cut(s)	15, 928
BsrI	ACTGG	2 cut(s)	1523, 2164
BssAI	RCCGGY	1 cut(s)	1805
BssECI	CCNNGG	2 cut(s)	235, 1674
BssMI	GATC	5 cut(s)	763, 1057, 1080, 1356, 1876
BssNAI	GTATAC	1 cut(s)	1464
Bst1107I	GTATAC	1 cut(s)	1464
Bst2UI	CCWGG	6 cut(s)	1031, 1363, 1666, 1676, 1766, 2178
Bst4CI	ACNGT	4 cut(s)	175, 1213, 1566, 1939
Bst6I	CTCTTC	3 cut(s)	658, 805, 813
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstAUI	TGTACA	2 cut(s)	15, 928
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	1271
BstC8I	GCNNGC	7 cut(s)	98, 196, 939, 1020, 1192, 1495, 1795
BstDEI	CTNAG	6 cut(s)	860, 870, 1197, 1448, 1469, 1570
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	1925
BstF5I	GGATG	8 cut(s)	494, 511, 552, 757, 849, 1502, 1966, 2186
BstFNI	CGCG	3 cut(s)	200, 210, 494
BstHHI	GCGC	4 cut(s)	200, 313, 494, 937
BstKTI	GATC	5 cut(s)	766, 1060, 1083, 1359, 1879
BstMAI	GTCTC	4 cut(s)	107, 181, 1202, 1666
BstMBI	GATC	5 cut(s)	763, 1057, 1080, 1356, 1876
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 191, 295, 871, 917, 968
BstNI	CCWGG	6 cut(s)	1031, 1363, 1666, 1676, 1766, 2178
BstNSI	RCATGY	4 cut(s)	413, 426, 935, 1489
BstSCI	CCNGG	7 cut(s)	650, 1029, 1361, 1664, 1674, 1764, 2176
BstSFI	CTRYAG	1 cut(s)	1779
BstUI	CGCG	3 cut(s)	200, 210, 494
BstV2I	GAAGAC	2 cut(s)	1740, 2177
BstX2I	RGATCY	1 cut(s)	1057
BstXI	CCANNNNNNTGG	1 cut(s)	1977
BstYI	RGATCY	1 cut(s)	1057
BstZ17I	GTATAC	1 cut(s)	1464
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	185, 258, 281, 865
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	2 cut(s)	491, 1748
BtsCI	GGATG	8 cut(s)	494, 511, 552, 757, 849, 1502, 1966, 2186
BtsI	GCAGTG	2 cut(s)	966, 1776
BtsIMutI	CAGTG	3 cut(s)	966, 1776, 1944
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	7 cut(s)	98, 196, 939, 1020, 1192, 1495, 1795
CaiI	CAGNNNCTG	1 cut(s)	2111
CciI	TCATGA	2 cut(s)	891, 1426
CfoI	GCGC	4 cut(s)	200, 313, 494, 937
Cfr10I	RCCGGY	1 cut(s)	1805
Cfr13I	GGNCC	2 cut(s)	225, 252
CpoI	CGGWCCG	1 cut(s)	252
CseI	GACGC	2 cut(s)	388, 657
CsiI	ACCWGGT	1 cut(s)	1029
Csp6I	GTAC	4 cut(s)	16, 929, 1824, 1918
CspI	CGGWCCG	1 cut(s)	252
CviQI	GTAC	4 cut(s)	16, 929, 1824, 1918
DdeI	CTNAG	6 cut(s)	860, 870, 1197, 1448, 1469, 1570
DpnI	GATC	5 cut(s)	765, 1059, 1082, 1358, 1878
DpnII	GATC	5 cut(s)	763, 1057, 1080, 1356, 1876
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	2 cut(s)	183, 279
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	658, 805, 813
EarI	CTCTTC	3 cut(s)	658, 805, 813
Ecl136II	GAGCTC	1 cut(s)	897
EclXI	CGGCCG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	899
Eco31I	GGTCTC	1 cut(s)	181
Eco32I	GATATC	2 cut(s)	1339, 2045
Eco47I	GGWCC	2 cut(s)	225, 252
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	83
Eco72I	CACGTG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	897
EcoNI	CCTNNNNNAGG	1 cut(s)	1925
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	6 cut(s)	1029, 1361, 1664, 1674, 1764, 2176
EcoRV	GATATC	2 cut(s)	1339, 2045
EcoT22I	ATGCAT	2 cut(s)	424, 543
EcoT38I	GRGCYC	1 cut(s)	899
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	238
FauI	CCCGC	2 cut(s)	294, 1598
FauNDI	CATATG	1 cut(s)	1291
FbaI	TGATCA	2 cut(s)	763, 1356
FblI	GTMKAC	1 cut(s)	1463
FokI	GGATG	8 cut(s)	501, 518, 559, 764, 856, 1489, 1953, 2193
FriOI	GRGCYC	1 cut(s)	899
FspBI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
FspI	TGCGCA	1 cut(s)	936
GlaI	GCGC	4 cut(s)	199, 312, 493, 936
GsaI	CCCAGC	2 cut(s)	614, 1917
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	185, 258, 281, 865
HapII	CCGG	5 cut(s)	250, 255, 486, 651, 1806
HgaI	GACGC	2 cut(s)	388, 657
HhaI	GCGC	4 cut(s)	200, 313, 494, 937
Hin6I	GCGC	4 cut(s)	198, 311, 492, 935
HinP1I	GCGC	4 cut(s)	198, 311, 492, 935
HincII	GTYRAC	1 cut(s)	1897
HindII	GTYRAC	1 cut(s)	1897
HindIII	AAGCTT	2 cut(s)	86, 960
HinfI	GANTC	6 cut(s)	115, 605, 1112, 1222, 1312, 1383
HpaII	CCGG	5 cut(s)	250, 255, 486, 651, 1806
HphI	GGTGA	3 cut(s)	121, 181, 1351
Hpy166II	GTNNAC	8 cut(s)	375, 415, 679, 1170, 1464, 1826, 1897, 1983
Hpy188I	TCNGA	6 cut(s)	768, 1041, 1198, 1308, 1326, 1444
Hpy188III	TCNNGA	7 cut(s)	61, 892, 1084, 1380, 1427, 1454, 2051
Hpy8I	GTNNAC	8 cut(s)	375, 415, 679, 1170, 1464, 1826, 1897, 1983
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	5 cut(s)	1043, 1403, 1783, 1910, 2158
HpyCH4III	ACNGT	4 cut(s)	175, 1213, 1566, 1939
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 191, 295, 871, 917, 968
HpyF3I	CTNAG	6 cut(s)	860, 870, 1197, 1448, 1469, 1570
HpySE526I	ACGT	1 cut(s)	276
HspAI	GCGC	4 cut(s)	198, 311, 492, 935
KflI	GGGWCCC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	1921
Ksp22I	TGATCA	2 cut(s)	763, 1356
Kzo9I	GATC	5 cut(s)	763, 1057, 1080, 1356, 1876
LguI	GCTCTTC	1 cut(s)	658
LmnI	GCTCC	1 cut(s)	23
LweI	GCATC	4 cut(s)	479, 834, 1725, 2171
MabI	ACCWGGT	1 cut(s)	1029
MaeI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	104, 187, 328
MalI	GATC	5 cut(s)	765, 1059, 1082, 1358, 1878
MboI	GATC	5 cut(s)	763, 1057, 1080, 1356, 1876
MboII	GAAGA	9 cut(s)	675, 752, 822, 830, 1740, 2039, 2040, 2135, 2182
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	1 cut(s)	899
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	109, 614
MmeI	TCCRAC	1 cut(s)	2168
Mox20I	TGGCCA	1 cut(s)	281
Mph1103I	ATGCAT	2 cut(s)	424, 543
MscI	TGGCCA	1 cut(s)	281
MslI	CAYNNNNRTG	5 cut(s)	930, 971, 1242, 1589, 2179
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	4 cut(s)	53, 289, 908, 2111
MspI	CCGG	5 cut(s)	250, 255, 486, 651, 1806
MspR9I	CCNGG	7 cut(s)	652, 1031, 1363, 1666, 1676, 1766, 2178
Mva1269I	GAATGC	6 cut(s)	328, 478, 1078, 1279, 1372, 1675
MvaI	CCWGG	6 cut(s)	1031, 1363, 1666, 1676, 1766, 2178
MvnI	CGCG	3 cut(s)	200, 210, 494
MwoI	GCNNNNNNNGC	6 cut(s)	85, 191, 295, 871, 917, 968
NciI	CCSGG	1 cut(s)	652
NdeI	CATATG	1 cut(s)	1291
NdeII	GATC	5 cut(s)	763, 1057, 1080, 1356, 1876
NlaIV	GGNNCC	4 cut(s)	25, 226, 227, 1919
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	2 cut(s)	187, 328
NsbI	TGCGCA	1 cut(s)	936
NsiI	ATGCAT	2 cut(s)	424, 543
NspI	RCATGY	4 cut(s)	413, 426, 935, 1489
NspV	TTCGAA	1 cut(s)	1271
OliI	CACNNNNGTG	1 cut(s)	971
PagI	TCATGA	2 cut(s)	891, 1426
PaqCI	CACCTGC	1 cut(s)	616
PceI	AGGCCT	1 cut(s)	865
PciSI	GCTCTTC	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 302
PctI	GAATGC	6 cut(s)	328, 478, 1078, 1279, 1372, 1675
PfeI	GAWTC	4 cut(s)	1112, 1222, 1312, 1383
PfoI	TCCNGGA	1 cut(s)	1664
PleI	GAGTC	2 cut(s)	109, 613
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	2 cut(s)	109, 613
Ppu21I	YACGTR	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	225
PshBI	ATTAAT	2 cut(s)	2147, 2193
Psp124BI	GAGCTC	1 cut(s)	899
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	6 cut(s)	1029, 1361, 1664, 1674, 1764, 2176
PspCI	CACGTG	1 cut(s)	277
PspFI	CCCAGC	2 cut(s)	610, 1913
PspGI	CCWGG	6 cut(s)	1029, 1361, 1664, 1674, 1764, 2176
PspN4I	GGNNCC	4 cut(s)	25, 226, 227, 1919
PspPI	GGNCC	2 cut(s)	225, 252
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	1783
PstNI	CAGNNNCTG	1 cut(s)	2111
PsuI	RGATCY	1 cut(s)	1057
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	4 cut(s)	17, 930, 1825, 1919
RsaNI	GTAC	4 cut(s)	16, 929, 1824, 1918
RseI	CAYNNNNRTG	5 cut(s)	930, 971, 1242, 1589, 2179
Rsr2I	CGGWCCG	1 cut(s)	252
RsrII	CGGWCCG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	899
SapI	GCTCTTC	1 cut(s)	658
Sau3AI	GATC	5 cut(s)	763, 1057, 1080, 1356, 1876
Sau96I	GGNCC	2 cut(s)	225, 252
SchI	GAGTC	2 cut(s)	109, 614
ScrFI	CCNGG	7 cut(s)	652, 1031, 1363, 1666, 1676, 1766, 2178
SduI	GDGCHC	1 cut(s)	899
SexAI	ACCWGGT	1 cut(s)	1029
SfaNI	GCATC	4 cut(s)	479, 834, 1725, 2171
SfcI	CTRYAG	1 cut(s)	1779
SfuI	TTCGAA	1 cut(s)	1271
SinI	GGWCC	2 cut(s)	225, 252
SmiMI	CAYNNNNRTG	5 cut(s)	930, 971, 1242, 1589, 2179
SmlI	CTYRAG	2 cut(s)	1095, 1507
SmoI	CTYRAG	2 cut(s)	1095, 1507
SseBI	AGGCCT	1 cut(s)	865
SsiI	CCGC	9 cut(s)	51, 182, 192, 287, 494, 719, 1605, 1791, 2109
SspI	AATATT	1 cut(s)	1975
SspMI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
SstI	GAGCTC	1 cut(s)	899
StuI	AGGCCT	1 cut(s)	865
StyD4I	CCNGG	7 cut(s)	650, 1029, 1361, 1664, 1674, 1764, 2176
TaaI	ACNGT	4 cut(s)	175, 1213, 1566, 1939
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	435, 1085, 1271, 2052
TatI	WGTACW	2 cut(s)	15, 928
TauI	GCSGC	3 cut(s)	53, 185, 2111
TfiI	GAWTC	4 cut(s)	1112, 1222, 1312, 1383
TscAI	CASTG	3 cut(s)	973, 1783, 1944
TseFI	GTSAC	2 cut(s)	187, 328
Tsp45I	GTSAC	2 cut(s)	187, 328
TspRI	CASTG	3 cut(s)	973, 1783, 1944
VpaK11BI	GGWCC	2 cut(s)	225, 252
VspI	ATTAAT	2 cut(s)	2147, 2193
XagI	CCTNNNNNAGG	1 cut(s)	1925
XapI	RAATTY	4 cut(s)	44, 1351, 1544, 1830
XceI	RCATGY	4 cut(s)	413, 426, 935, 1489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1977
XmiI	GTMKAC	1 cut(s)	1463
XspI	CTAG	5 cut(s)	579, 1296, 1316, 1904, 2024
Zsp2I	ATGCAT	2 cut(s)	424, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.