RLG00000017936

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018575
Physical Location & Seq
Reverse (-)
23236911 .. 23238218
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017936

Sequence Viewer

Length: 345 bp
ATGCAGGTGGTGGTAGGCAGCATTGTGGTGCGATCCGGTCAAGGCGATCCAAGGGGAGGTGTGGTTGGCCAGTCGGGCGACCCGTTCTTCCTCTGGTCTCGAGTTGATGATGGTTGTGCTGATGGTGTTGACTGGTATTTGGCTGAACTAAGTTGGGCGGGGAGGATACTAGGCGATCTTGACAGCGATGGGCGCTTCGCAGCCTTGTTGGGTTGCGGGTTGGTGCGACGACGAGCGTCTGGTGTTGATACTCCGGCAACGAGGCAGCGGCAGGCGGAGGTGGATGGTGGTAGGATGGCGACCGGATTCCAAGTAAGGCGCTGGTACGGTGACTGCCGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.28

Weight (kDa)

6.16

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134621
rosa_laevigata RLG00000017936
rosa_samantha Rh1AG309800 Rh1CG265600 Rh1CG281900 Rh2BG661300 Rh6AG094900 Rh6BG500900 Rh7AG075000
rosa_wichuraiana Rw2G030530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 158, 216, 268, 275
AclWI GGATC 2 cut(s) 27, 41
AcoI YGGCCR 1 cut(s) 67
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 27, 41
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 3 cut(s) 18, 200, 265
AspLEI GCGC 2 cut(s) 195, 321
AsuHPI GGTGA 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 99
BalI TGGCCA 1 cut(s) 69
BbvI GCAGC 3 cut(s) 30, 212, 277
BccI CCATC 5 cut(s) 104, 116, 182, 278, 289
BceAI ACGGC 1 cut(s) 321
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 170
BfoI RGCGCY 2 cut(s) 196, 322
BfuI GTATCC 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 4 cut(s) 19, 201, 266, 269
BlsI GCNGC 4 cut(s) 20, 202, 267, 270
BmeT110I CYCGRG 1 cut(s) 99
BoxI GACNNNNGTC 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 2 cut(s) 35, 302
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 70, 137
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 289, 300
BseLI CCNNNNNNNGG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 70, 137
BseXI GCAGC 3 cut(s) 30, 212, 277
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 3 cut(s) 36, 254, 303
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 99
Bsp143I GATC 3 cut(s) 32, 46, 175
BspACI CCGC 4 cut(s) 158, 216, 268, 275
BspANI GGCC 1 cut(s) 69
BspPI GGATC 2 cut(s) 27, 41
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 70, 137
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 3 cut(s) 32, 46, 175
BssT1I CCWWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 289, 300
BstH2I RGCGCY 2 cut(s) 196, 322
BstHHI GCGC 2 cut(s) 195, 321
BstKTI GATC 3 cut(s) 35, 49, 178
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 32, 46, 175
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 75, 192
BstPAI GACNNNNGTC 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 30, 212, 277
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 289, 300
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 2 cut(s) 195, 321
CseI GACGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 325
CviJI RGCY 3 cut(s) 69, 143, 203
CviKI_1 RGCY 3 cut(s) 69, 143, 203
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 149
DpnI GATC 3 cut(s) 34, 48, 177
DpnII GATC 3 cut(s) 32, 46, 175
EaeI YGGCCR 1 cut(s) 67
EciI GGCGGA 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FauI CCCGC 2 cut(s) 151, 209
Fnu4HI GCNGC 4 cut(s) 19, 201, 266, 269
FokI GGATG 2 cut(s) 296, 307
Fsp4HI GCNGC 4 cut(s) 19, 201, 266, 269
FspBI CTAG 1 cut(s) 170
GlaI GCGC 2 cut(s) 194, 320
GluI GCNGC 4 cut(s) 19, 201, 266, 269
HaeII RGCGCY 2 cut(s) 196, 322
HaeIII GGCC 1 cut(s) 69
HapII CCGG 3 cut(s) 36, 254, 303
HgaI GACGC 1 cut(s) 225
HhaI GCGC 2 cut(s) 195, 321
Hin6I GCGC 2 cut(s) 193, 319
HinP1I GCGC 2 cut(s) 193, 319
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 306
HpaII CCGG 3 cut(s) 36, 254, 303
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 99, 179, 342
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 2 cut(s) 231, 234
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 192
HpyF3I CTNAG 1 cut(s) 149
HspAI GCGC 2 cut(s) 193, 319
Kzo9I GATC 3 cut(s) 32, 46, 175
LpnPI CCDG 9 cut(s) 49, 79, 83, 118, 225, 257, 267, 307, 316
Lsp1109I GCAGC 3 cut(s) 30, 212, 277
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 329
MalI GATC 3 cut(s) 34, 48, 177
MboI GATC 3 cut(s) 32, 46, 175
MboII GAAGA 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MnlI CCTC 5 cut(s) 50, 101, 156, 255, 271
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 3 cut(s) 36, 254, 303
MwoI GCNNNNNNNGC 2 cut(s) 75, 192
NdeII GATC 3 cut(s) 32, 46, 175
NmuCI GTSAC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 4 cut(s) 20, 202, 267, 270
PshAI GACNNNNGTC 1 cut(s) 235
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 4 cut(s) 19, 201, 266, 269
Sau3AI GATC 3 cut(s) 32, 46, 175
SetI ASST 3 cut(s) 9, 61, 282
Sfr274I CTCGAG 1 cut(s) 99
SlaI CTCGAG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SsiI CCGC 4 cut(s) 158, 216, 268, 275
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 100
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 306
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 3 cut(s) 18, 200, 265
Tsp45I GTSAC 1 cut(s) 329
XhoI CTCGAG 1 cut(s) 99
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.