Rh7AG075000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018575
Physical Location & Seq
Forward (+)
5340777 .. 5341841
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG075000.1

Sequence Viewer

Length: 303 bp
ATGCAGGTGGTGGCAGGCAGCACTGTGGTGCGATCCGGTCAAGGAGATCCAAGGGGAGGTGTGGTTGGCCAGTCGGGCGACCCGTTCTTCCTCTGGTCTCAAGTTGATGATGGTTGTGCTGATGGTGTTGACTGGTATTTGGCTGACCTAAGTTGGGCGGGGAGGATACTAGGCGATCTTGACGGCGATGGGAGCTTCGCCGCCTTATTGGGCTGCGGGTTGGTGCGACGACGAGCGTCTGGTGTTGCTACTCCGGCGACGAGGTTCTGTCACGGACCTGTGTTGGGTCTAGGCCTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.22

Weight (kDa)

4.66

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134621
rosa_laevigata RLG00000017936
rosa_samantha Rh1AG309800 Rh1CG265600 Rh1CG281900 Rh2BG661300 Rh6AG094900 Rh6BG500900 Rh7AG075000
rosa_wichuraiana Rw2G030530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 158, 201, 216
AclWI GGATC 2 cut(s) 27, 41
AcoI YGGCCR 1 cut(s) 67
AfiI CCNNNNNNNGG 3 cut(s) 56, 154, 284
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 2 cut(s) 195, 300
AluI AGCT 2 cut(s) 195, 300
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 27, 41
AoxI GGCC 2 cut(s) 67, 292
ApeKI GCWGC 2 cut(s) 18, 213
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
BalI TGGCCA 1 cut(s) 69
BbvI GCAGC 2 cut(s) 30, 200
BccI CCATC 3 cut(s) 104, 116, 182
BceAI ACGGC 1 cut(s) 199
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 3 cut(s) 170, 290, 301
BfuI GTATCC 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 3 cut(s) 19, 201, 214
BlsI GCNGC 3 cut(s) 20, 202, 215
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BoxI GACNNNNGTC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 154, 284
Bse1I ACTGG 2 cut(s) 70, 137
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 3 cut(s) 56, 154, 284
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 70, 137
BseXI GCAGC 2 cut(s) 30, 200
BshFI GGCC 2 cut(s) 69, 294
BsiSI CCGG 2 cut(s) 36, 254
BslI CCNNNNNNNGG 3 cut(s) 56, 154, 284
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 2 cut(s) 69, 294
Bso31I GGTCTC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 32, 46, 175
BspACI CCGC 3 cut(s) 158, 201, 216
BspANI GGCC 2 cut(s) 69, 294
BspCNI CTCAG 1 cut(s) 288
BspPI GGATC 2 cut(s) 27, 41
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 70, 137
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 3 cut(s) 32, 46, 175
BssT1I CCWWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 149, 296
BstKTI GATC 3 cut(s) 35, 49, 178
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 32, 46, 175
BstMWI GCNNNNNNNGC 3 cut(s) 75, 192, 254
BstPAI GACNNNNGTC 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 30, 200
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 69, 294
BtgZI GCGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 275
CseI GACGC 1 cut(s) 225
CviJI RGCY 6 cut(s) 69, 143, 195, 213, 294, 300
CviKI_1 RGCY 6 cut(s) 69, 143, 195, 213, 294, 300
DdeI CTNAG 2 cut(s) 149, 296
DpnI GATC 3 cut(s) 34, 48, 177
DpnII GATC 3 cut(s) 32, 46, 175
EaeI YGGCCR 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 50
Eco147I AGGCCT 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FauI CCCGC 2 cut(s) 151, 209
Fnu4HI GCNGC 3 cut(s) 19, 201, 214
Fsp4HI GCNGC 3 cut(s) 19, 201, 214
FspBI CTAG 3 cut(s) 170, 290, 301
GluI GCNGC 3 cut(s) 19, 201, 214
HaeIII GGCC 2 cut(s) 69, 294
HapII CCGG 2 cut(s) 36, 254
HgaI GACGC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HpaII CCGG 2 cut(s) 36, 254
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 3 cut(s) 231, 234, 262
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 192, 254
HpyF3I CTNAG 2 cut(s) 149, 296
Kzo9I GATC 3 cut(s) 32, 46, 175
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 7 cut(s) 49, 79, 83, 118, 225, 267, 291
Lsp1109I GCAGC 2 cut(s) 30, 200
MaeI CTAG 3 cut(s) 170, 290, 301
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 34, 48, 177
MboI GATC 3 cut(s) 32, 46, 175
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MnlI CCTC 4 cut(s) 50, 101, 156, 255
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 2 cut(s) 36, 254
MwoI GCNNNNNNNGC 3 cut(s) 75, 192, 254
NdeII GATC 3 cut(s) 32, 46, 175
NmuCI GTSAC 1 cut(s) 269
OliI CACNNNNGTG 1 cut(s) 26
PceI AGGCCT 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PkrI GCNGC 3 cut(s) 20, 202, 215
PshAI GACNNNNGTC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 3 cut(s) 19, 201, 214
Sau3AI GATC 3 cut(s) 32, 46, 175
Sau96I GGNCC 1 cut(s) 275
SetI ASST 7 cut(s) 9, 61, 150, 197, 266, 280, 302
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 3 cut(s) 158, 201, 216
SspMI CTAG 3 cut(s) 170, 290, 301
StuI AGGCCT 1 cut(s) 294
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 25
TauI GCSGC 1 cut(s) 203
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 18, 213
Tsp45I GTSAC 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 275
XspI CTAG 3 cut(s) 170, 290, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.