Rh1CG265600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018575
Physical Location & Seq
Forward (+)
53023706 .. 53024008
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG265600.1

Sequence Viewer

Length: 303 bp
ATGCAAGTGGTGGCAGGCAGCCCTGTGGTGCGATCCTGTCAAGGCGATCCAAGGGGAGGTGTGGTTGGCCAGTCGGGCGACCCGTTCTTCCTCTGGTCTCGAGTTGATGATGGTTGTGCTGATGGTGTTGACTGGTATTTGGCTGACCTAAGTTGGGCGGGGAGGATACTAGGCGATCTTGACAGCTATGGGAGCTTCACCGCCTTGTTGGGCTGCGGGTTGGTGCGACGACGAGTGTCTGGTGTTGCTGCTCCGGCGACGAGGTTCTGTCACGGACCTGTGTTGAGTCTGGGCCTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.43

Weight (kDa)

5.53

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134621
rosa_laevigata RLG00000017936
rosa_samantha Rh1AG309800 Rh1CG265600 Rh1CG281900 Rh2BG661300 Rh6AG094900 Rh6BG500900 Rh7AG075000
rosa_wichuraiana Rw2G030530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 158, 201, 216
AclWI GGATC 2 cut(s) 27, 41
AcoI YGGCCR 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 56, 154
AluBI AGCT 3 cut(s) 186, 195, 300
AluI AGCT 3 cut(s) 186, 195, 300
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 27, 41
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 2 cut(s) 67, 292
ApeKI GCWGC 3 cut(s) 18, 213, 248
AspS9I GGNCC 2 cut(s) 275, 292
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 275
BalI TGGCCA 1 cut(s) 69
BbvI GCAGC 3 cut(s) 30, 200, 235
BccI CCATC 2 cut(s) 104, 116
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 2 cut(s) 170, 301
BfuI GTATCC 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 3 cut(s) 19, 214, 249
BlsI GCNGC 3 cut(s) 20, 215, 250
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 275, 292
BoxI GACNNNNGTC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 154
Bse1I ACTGG 2 cut(s) 70, 137
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 56, 154
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 70, 137
BseXI GCAGC 3 cut(s) 30, 200, 235
BshFI GGCC 2 cut(s) 69, 294
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 56, 154
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 2 cut(s) 69, 294
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 99
Bsp143I GATC 3 cut(s) 32, 46, 175
BspACI CCGC 3 cut(s) 158, 201, 216
BspANI GGCC 2 cut(s) 69, 294
BspCNI CTCAG 1 cut(s) 288
BspPI GGATC 2 cut(s) 27, 41
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 70, 137
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 3 cut(s) 32, 46, 175
BssT1I CCWWGG 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 149, 296
BstKTI GATC 3 cut(s) 35, 49, 178
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 32, 46, 175
BstMWI GCNNNNNNNGC 3 cut(s) 75, 192, 254
BstPAI GACNNNNGTC 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 30, 200, 235
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 69, 294
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 275, 292
CviJI RGCY 8 cut(s) 21, 69, 143, 186, 195, 213, 294, 300
CviKI_1 RGCY 8 cut(s) 21, 69, 143, 186, 195, 213, 294, 300
DdeI CTNAG 2 cut(s) 149, 296
DpnI GATC 3 cut(s) 34, 48, 177
DpnII GATC 3 cut(s) 32, 46, 175
EaeI YGGCCR 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaiI YATR 1 cut(s) 189
FauI CCCGC 2 cut(s) 151, 209
Fnu4HI GCNGC 3 cut(s) 19, 214, 249
Fsp4HI GCNGC 3 cut(s) 19, 214, 249
FspBI CTAG 2 cut(s) 170, 301
GluI GCNGC 3 cut(s) 19, 214, 249
HaeIII GGCC 2 cut(s) 69, 294
HapII CCGG 1 cut(s) 254
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 286
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 99, 179
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 3 cut(s) 231, 234, 262
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 192, 254
HpyF3I CTNAG 2 cut(s) 149, 296
Kzo9I GATC 3 cut(s) 32, 46, 175
LmnI GCTCC 2 cut(s) 192, 256
LpnPI CCDG 9 cut(s) 36, 49, 79, 83, 118, 225, 267, 275, 291
Lsp1109I GCAGC 3 cut(s) 30, 200, 235
MaeI CTAG 2 cut(s) 170, 301
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 34, 48, 177
MboI GATC 3 cut(s) 32, 46, 175
MboII GAAGA 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 4 cut(s) 50, 101, 156, 255
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 75, 192, 254
NdeII GATC 3 cut(s) 32, 46, 175
NmuCI GTSAC 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PkrI GCNGC 3 cut(s) 20, 215, 250
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 275, 292
SatI GCNGC 3 cut(s) 19, 214, 249
Sau3AI GATC 3 cut(s) 32, 46, 175
Sau96I GGNCC 2 cut(s) 275, 292
SchI GAGTC 1 cut(s) 295
SetI ASST 7 cut(s) 61, 150, 188, 197, 266, 280, 302
Sfr274I CTCGAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 275
SlaI CTCGAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SsiI CCGC 3 cut(s) 158, 201, 216
SspMI CTAG 2 cut(s) 170, 301
StyI CCWWGG 1 cut(s) 50
TaqI TCGA 1 cut(s) 100
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 18, 213, 248
Tsp45I GTSAC 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 99
XspI CTAG 2 cut(s) 170, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.