Rh6BG500900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018575
Physical Location & Seq
Forward (+)
70076398 .. 70076649
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG500900.1

Sequence Viewer

Length: 252 bp
ATGTTTCCGCAAATAGAGATTGAGAGTCTATTTCTAACGATATTACGTGCTTGGTGGCTCCTGAAAGAGGCTGTTAGGCAGGGACAGAGGGGGAGGCTGAACCGAGGGCGACCGGCGATGCAGGTGGTGGCAGGCAGCACTGTGGTGCGATCCGGTCAAGGCGATCCAAGGGGAGGTGTGGTTGGCCAGTCGGGCGACCCGTTCTTCCTCTGGTCTCGAGTTGATGATGGTTGTGCTAATGGTGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.11

Weight (kDa)

9.47

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134621
rosa_laevigata RLG00000017936
rosa_samantha Rh1AG309800 Rh1CG265600 Rh1CG281900 Rh2BG661300 Rh6AG094900 Rh6BG500900 Rh7AG075000
rosa_wichuraiana Rw2G030530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AciI CCGC 1 cut(s) 8
AclWI GGATC 2 cut(s) 144, 158
AcoI YGGCCR 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 67, 173
AleI CACNNNNGTG 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 2 cut(s) 144, 158
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 216
BalI TGGCCA 1 cut(s) 186
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 112
BglI GCCNNNNNGGC 1 cut(s) 192
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 59
BmsI GCATC 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 103, 167
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 173
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 103, 167
BseLI CCNNNNNNNGG 2 cut(s) 67, 173
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 186
BsiEI CGRYCG 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 2 cut(s) 113, 153
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 67, 173
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 216
Bsp143I GATC 2 cut(s) 149, 163
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 59
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 2 cut(s) 144, 158
BspTNI GGTCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 103, 167
BssMI GATC 2 cut(s) 149, 163
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 65
BstKTI GATC 2 cut(s) 152, 166
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 149, 163
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 112
CviJI RGCY 4 cut(s) 58, 71, 97, 186
CviKI_1 RGCY 4 cut(s) 58, 71, 97, 186
DpnI GATC 2 cut(s) 151, 165
DpnII GATC 2 cut(s) 149, 163
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaqI GGGAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 186
HapII CCGG 2 cut(s) 113, 153
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 1 cut(s) 25
HpaII CCGG 2 cut(s) 113, 153
Hpy166II GTNNAC 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 61, 216
Hpy8I GTNNAC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 46
Kzo9I GATC 2 cut(s) 149, 163
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 8 cut(s) 65, 74, 107, 117, 126, 166, 196, 200
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 108
MaeII ACGT 1 cut(s) 46
MalI GATC 2 cut(s) 151, 165
MboI GATC 2 cut(s) 149, 163
MboII GAAGA 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 186
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 6 cut(s) 61, 81, 87, 98, 167, 218
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 2 cut(s) 113, 153
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 2 cut(s) 149, 163
NlaIV GGNNCC 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 216
PaqCI CACCTGC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 143
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 149, 163
SchI GAGTC 1 cut(s) 34
SetI ASST 3 cut(s) 49, 126, 178
SfaNI GCATC 1 cut(s) 108
Sfr274I CTCGAG 1 cut(s) 216
SlaI CTCGAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
SsiI CCGC 1 cut(s) 8
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 217
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 135
TspRI CASTG 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.