Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018575

Physical Location & Seq

Genomic Coordinates Forward (+)

55346829 .. 55351539

Gene Structure 4711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG281900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAGGTGGTGGCAGGCAGCACTGTGGTGCGATCCAGTCAAGGCGATCCAAGGGGAGGTGTGGTTGGCCAGTCAGGCGACCCGGTCTTCCTCTGGTCTCGAATTGATGATGGTTGTGTTGATGGTGTTGACTGGTATTTGGCTGAACTCAGTTGGGCGGGGAGGATACTAGGCGATCTTGACGGCGATGGGAACTTTGCTACCTTGTTGGGCTGCGGGTTGAGTGAGGAGGTTAAGAGGAGGTTTTACAAGAACTGGTGCAAGACCAAGAAGAAGGCTTTCGCAAAGTACTCCAAGACCTATGACACTGACGAAGGAAAGAAGAATATTGAAGGACAGTTTGAGAAACTGATTAAATATGCTACTGTTATTCGAGTTTTGGCTCACACTCGGATCAGGAAGATGAAGGGTTTGATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

140

Amino Acids

15.58

Weight (kDa)

9.28

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L3	PF00297	65 - 138	1.5e-23	Ribosomal protein L3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018575)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0134621
rosa_laevigata	RLG00000017936
rosa_samantha	Rh1AG309800 Rh1CG265600 Rh1CG281900 Rh2BG661300 Rh6AG094900 Rh6BG500900 Rh7AG075000
rosa_wichuraiana	Rw2G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	158, 216
AclWI	GGATC	3 cut(s)	27, 41, 401
AcoI	YGGCCR	1 cut(s)	67
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	332
AleI	CACNNNNGTG	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	3 cut(s)	27, 41, 401
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	18, 213
Asp700I	GAANNNNTTC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	30, 200
BccI	CCATC	3 cut(s)	104, 116, 182
BceAI	ACGGC	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	2 cut(s)	19, 214
BlsI	GCNGC	2 cut(s)	20, 215
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	4 cut(s)	36, 70, 137, 260
BseDI	CCNNGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	4 cut(s)	36, 70, 137, 260
BseRI	GAGGAG	2 cut(s)	242, 253
BseXI	GCAGC	2 cut(s)	30, 200
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	102
Bsp143I	GATC	4 cut(s)	32, 46, 175, 393
BspACI	CCGC	2 cut(s)	158, 216
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	162
BspPI	GGATC	3 cut(s)	27, 41, 401
BspTNI	GGTCTC	1 cut(s)	102
BsrI	ACTGG	4 cut(s)	36, 70, 137, 260
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	4 cut(s)	32, 46, 175, 393
BssT1I	CCWWGG	1 cut(s)	50
Bst4CI	ACNGT	3 cut(s)	25, 339, 367
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	149
BstKTI	GATC	4 cut(s)	35, 49, 178, 396
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	4 cut(s)	32, 46, 175, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	30, 200
BstV2I	GAAGAC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	21, 306
Cac8I	GCNNGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	289
CviJI	RGCY	5 cut(s)	69, 143, 213, 278, 383
CviKI_1	RGCY	5 cut(s)	69, 143, 213, 278, 383
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	4 cut(s)	34, 48, 177, 395
DpnII	GATC	4 cut(s)	32, 46, 175, 393
EaeI	YGGCCR	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaiI	YATR	2 cut(s)	303, 360
FauI	CCCGC	2 cut(s)	151, 209
Fnu4HI	GCNGC	2 cut(s)	19, 214
Fsp4HI	GCNGC	2 cut(s)	19, 214
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	2 cut(s)	19, 214
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	3 cut(s)	99, 179, 397
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	268, 308, 326, 400
HpyCH4III	ACNGT	3 cut(s)	25, 339, 367
HpyCH4V	TGCA	2 cut(s)	4, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	32, 46, 175, 393
LpnPI	CCDG	8 cut(s)	49, 60, 79, 83, 96, 118, 241, 382
Lsp1109I	GCAGC	2 cut(s)	30, 200
MaeI	CTAG	1 cut(s)	170
MalI	GATC	4 cut(s)	34, 48, 177, 395
MboI	GATC	4 cut(s)	32, 46, 175, 393
MboII	GAAGA	4 cut(s)	79, 283, 334, 412
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	69
MnlI	CCTC	7 cut(s)	50, 101, 156, 220, 223, 231, 234
Mox20I	TGGCCA	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	2 cut(s)	234, 354
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	69
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	4 cut(s)	32, 46, 175, 393
OliI	CACNNNNGTG	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	20, 215
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	234, 354
SatI	GCNGC	2 cut(s)	19, 214
Sau3AI	GATC	4 cut(s)	32, 46, 175, 393
ScaI	AGTACT	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	6 cut(s)	9, 61, 206, 234, 245, 302
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	2 cut(s)	158, 216
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	3 cut(s)	25, 339, 367
TaqI	TCGA	2 cut(s)	100, 373
TasI	AATT	1 cut(s)	102
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	234, 354
Tru9I	TTAA	2 cut(s)	234, 354
TscAI	CASTG	2 cut(s)	28, 313
TseI	GCWGC	2 cut(s)	18, 213
TspDTI	ATGAA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	28, 313
Tth111I	GACNNNGTC	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.