Rw2G030530

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018575
Physical Location & Seq
Reverse (-)
49953051 .. 49968418
15368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G030530.1

Sequence Viewer

Length: 432 bp
ATGCAGGTGGTGGCAGGCAGCACTGTGGTGCGATCCGGTCAAGGCGATCCAAGGGGAGGTGTGGTTGGCCAATCGGGCGACCCGTTCTTCCTCTGGTCTCGAGTTGATGATGGTTGTGCTGATGGTGTTGACTGGTATTTGGCTGACCTAAGTTGGGCGGGGAGGATACTAGGCGATCTTGACGGCGATGGGAGCTTCGCCGCCTTGTTGGGCTGCAGGTTGGTGCGACGACGAGCGTCTGGTGTTGCTGCTCCGGCGACGAGGTTCTGTCACAGACCTATGTTGGCAAATACCCAAACTGATGTGGGAACAGTTGCAGATGAAACAGTGGAAGAAGACGATCAAAGTGACCCATGGAAGAAGCTAAAAGACTTTGCGGGGTCTGTTGCAAATGGAGCTTTAAAATGGCTGGGAGACAACCATTGGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

143

Amino Acids

15.3

Weight (kDa)

4.85

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0134621
rosa_laevigata RLG00000017936
rosa_samantha Rh1AG309800 Rh1CG265600 Rh1CG281900 Rh2BG661300 Rh6AG094900 Rh6BG500900 Rh7AG075000
rosa_wichuraiana Rw2G030530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AciI CCGC 3 cut(s) 158, 201, 377
AclWI GGATC 2 cut(s) 27, 41
AcoI YGGCCR 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 56, 154
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 3 cut(s) 195, 364, 398
AluI AGCT 3 cut(s) 195, 364, 398
Alw26I GTCTC 2 cut(s) 102, 408
AlwI GGATC 2 cut(s) 27, 41
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 3 cut(s) 18, 213, 248
AvaI CYCGRG 1 cut(s) 99
BalI TGGCCA 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 3 cut(s) 30, 200, 235
BccI CCATC 3 cut(s) 104, 116, 182
BceAI ACGGC 1 cut(s) 199
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 102, 408
BfaI CTAG 2 cut(s) 170, 430
BfmI CTRYAG 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 207
BfuI GTATCC 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 4 cut(s) 19, 201, 214, 249
BlsI GCNGC 4 cut(s) 20, 202, 215, 250
BmeT110I CYCGRG 1 cut(s) 99
BoxI GACNNNNGTC 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 50, 353
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 154
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 50, 353
BseLI CCNNNNNNNGG 2 cut(s) 56, 154
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 30, 200, 235
BseYI CCCAGC 1 cut(s) 409
BshFI GGCC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 2 cut(s) 36, 254
BslI CCNNNNNNNGG 2 cut(s) 56, 154
BsmAI GTCTC 2 cut(s) 102, 408
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 99
Bsp143I GATC 4 cut(s) 32, 46, 175, 340
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 3 cut(s) 158, 201, 377
BspANI GGCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 27, 41
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 50, 353
BssMI GATC 4 cut(s) 32, 46, 175, 340
BssT1I CCWWGG 2 cut(s) 50, 353
Bst4CI ACNGT 3 cut(s) 25, 313, 328
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 353
BstKTI GATC 4 cut(s) 35, 49, 178, 343
BstMAI GTCTC 2 cut(s) 102, 408
BstMBI GATC 4 cut(s) 32, 46, 175, 340
BstMWI GCNNNNNNNGC 4 cut(s) 75, 192, 254, 395
BstPAI GACNNNNGTC 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 30, 200, 235
BstV2I GAAGAC 1 cut(s) 342
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 21, 333
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 16
CseI GACGC 1 cut(s) 225
CviAII CATG 1 cut(s) 354
CviJI RGCY 7 cut(s) 69, 143, 195, 213, 364, 398, 409
CviKI_1 RGCY 7 cut(s) 69, 143, 195, 213, 364, 398, 409
DdeI CTNAG 1 cut(s) 149
DpnI GATC 4 cut(s) 34, 48, 177, 342
DpnII GATC 4 cut(s) 32, 46, 175, 340
DraI TTTAAA 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 50, 353
Eco31I GGTCTC 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 99
EcoT14I CCWWGG 2 cut(s) 50, 353
ErhI CCWWGG 2 cut(s) 50, 353
FaeI CATG 1 cut(s) 357
FaiI YATR 2 cut(s) 281, 355
FatI CATG 1 cut(s) 353
FauI CCCGC 2 cut(s) 151, 370
Fnu4HI GCNGC 4 cut(s) 19, 201, 214, 249
Fsp4HI GCNGC 4 cut(s) 19, 201, 214, 249
FspBI CTAG 2 cut(s) 170, 430
GluI GCNGC 4 cut(s) 19, 201, 214, 249
GsaI CCCAGC 1 cut(s) 413
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 36, 254
HgaI GACGC 1 cut(s) 225
Hin1II CATG 1 cut(s) 357
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HpaII CCGG 2 cut(s) 36, 254
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 99, 179
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 3 cut(s) 231, 234, 262
HpyCH4III ACNGT 3 cut(s) 25, 313, 328
HpyCH4V TGCA 4 cut(s) 4, 216, 317, 389
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 192, 254, 395
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 357
Kzo9I GATC 4 cut(s) 32, 46, 175, 340
LmnI GCTCC 3 cut(s) 192, 256, 395
LpnPI CCDG 7 cut(s) 49, 79, 118, 202, 225, 267, 395
Lsp1109I GCAGC 3 cut(s) 30, 200, 235
MaeI CTAG 2 cut(s) 170, 430
MaeIII GTNAC 2 cut(s) 269, 347
MalI GATC 4 cut(s) 34, 48, 177, 342
MboI GATC 4 cut(s) 32, 46, 175, 340
MboII GAAGA 4 cut(s) 79, 344, 347, 370
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MnlI CCTC 4 cut(s) 50, 101, 156, 255
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 2 cut(s) 36, 254
MwoI GCNNNNNNNGC 4 cut(s) 75, 192, 254, 395
NcoI CCATGG 1 cut(s) 353
NdeII GATC 4 cut(s) 32, 46, 175, 340
NlaIII CATG 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 269, 347
OliI CACNNNNGTG 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PkrI GCNGC 4 cut(s) 20, 202, 215, 250
PshAI GACNNNNGTC 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 4 cut(s) 19, 201, 214, 249
Sau3AI GATC 4 cut(s) 32, 46, 175, 340
SetI ASST 9 cut(s) 9, 61, 150, 197, 221, 266, 280, 366, 400
SfcI CTRYAG 1 cut(s) 214
Sfr274I CTCGAG 1 cut(s) 99
SlaI CTCGAG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SsiI CCGC 3 cut(s) 158, 201, 377
SspMI CTAG 2 cut(s) 170, 430
StyI CCWWGG 2 cut(s) 50, 353
TaaI ACNGT 3 cut(s) 25, 313, 328
TaqI TCGA 1 cut(s) 100
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 2 cut(s) 28, 333
TseFI GTSAC 2 cut(s) 269, 347
TseI GCWGC 3 cut(s) 18, 213, 248
Tsp45I GTSAC 2 cut(s) 269, 347
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 2 cut(s) 28, 333
XhoI CTCGAG 1 cut(s) 99
XspI CTAG 2 cut(s) 170, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.