RLG00000018508

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018459
Physical Location & Seq
Reverse (-)
30976418 .. 30978344
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018508

Sequence Viewer

Length: 378 bp
ATGTCGAGCATTGAGACCCGGTTGTGGAGGCGGGCAATGGACTCCGGTGGGTCGAGGATGACGGTGAGGGGGATAGAGAGACGAGTACTCCTTCAATTGTTGATTCCAGTCGTCATCGTAGAGCTTATAGATGATGCAGTCGAAGGGGCCCTGCTGGGTCAAGGCCTTGGCGGCATCGACGGGGACCAGATCGATGTCGTGTTGTCCGACGTGGGCTATCAGCGATGGTTGGATGAAGTTCTCAGATATTCCGAAGCCTTCAAGACAAACCCCAACTCTTCAGGAAGTTGTGCAGCAACAACAACCACTCCAGGATCAATCAGGGTTGTAAATCAGCTTGATATAGCTCGGGTACGAATCGACGAGCTTGGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.63

Weight (kDa)

4.76

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018459)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23070
rosa_chinensis RchiOBHm_Chr2g0132461 RchiOBHm_Chr5g0044431 RchiOBHm_Chr6g0278561
rosa_laevigata RLG00000018508
rosa_multiflora Rmu_sc0000159.1_g000019 Rmu_sc0000723.1_g000010 Rmu_sc0004935.1_g000033
rosa_rugosa Rorug05G0214000
rosa_wichuraiana Rw1G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 31, 171
AclWI GGATC 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 2 cut(s) 87, 354
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 2 cut(s) 95, 262
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 4 cut(s) 124, 337, 347, 367
AluI AGCT 4 cut(s) 124, 337, 347, 367
Alw26I GTCTC 2 cut(s) 8, 73
AlwI GGATC 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 348
AoxI GGCC 2 cut(s) 147, 163
ApaI GGGCCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 293
AspS9I GGNCC 3 cut(s) 147, 148, 184
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 305
BccI CCATC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 312
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 8, 73
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 2 cut(s) 172, 294
BlsI GCNGC 2 cut(s) 173, 295
BmcAI AGTACT 1 cut(s) 87
Bme1390I CCNGG 2 cut(s) 19, 312
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 348
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 3 cut(s) 147, 148, 184
BmiI GGNNCC 3 cut(s) 148, 149, 185
BmrFI CCNGG 2 cut(s) 19, 312
BmsI GCATC 2 cut(s) 124, 183
BpmI CTGGAG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 292, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 312
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 63, 238
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 1 cut(s) 305
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 2 cut(s) 149, 165
BshVI ATCGAT 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 2 cut(s) 19, 45
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 8, 73
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 149, 165
Bso31I GGTCTC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 348
Bsp120I GGGCCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 189, 314
BspACI CCGC 2 cut(s) 31, 171
BspANI GGCC 2 cut(s) 149, 165
BspCNI CTCAG 1 cut(s) 255
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 148, 149, 185
BspPI GGATC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 189, 314
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 63, 238
BstKTI GATC 2 cut(s) 192, 317
BstMAI GTCTC 2 cut(s) 8, 73
BstMBI GATC 2 cut(s) 189, 314
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 2 cut(s) 17, 310
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 305
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 2 cut(s) 149, 165
BsuTUI ATCGAT 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 238
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 63, 238
Cac8I GCNNGC 1 cut(s) 33
Cfr13I GGNCC 3 cut(s) 147, 148, 184
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 2 cut(s) 86, 353
CviJI RGCY 9 cut(s) 124, 149, 165, 216, 257, 337, 347, 367, 372
CviKI_1 RGCY 9 cut(s) 124, 149, 165, 216, 257, 337, 347, 367, 372
CviQI GTAC 2 cut(s) 86, 353
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 191, 316
DpnII GATC 2 cut(s) 189, 314
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 348
EcoO109I RGGNCCY 2 cut(s) 147, 148
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 73
FaiI YATR 2 cut(s) 128, 344
FaqI GGGAC 1 cut(s) 197
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 172, 294
FokI GGATG 2 cut(s) 70, 245
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 172, 294
GluI GCNGC 2 cut(s) 172, 294
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 149, 165
HapII CCGG 2 cut(s) 19, 45
HinfI GANTC 3 cut(s) 41, 103, 357
HpaII CCGG 2 cut(s) 19, 45
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 208, 245, 253
Hpy188III TCNNGA 2 cut(s) 262, 282
Hpy99I CGWCG 3 cut(s) 182, 212, 365
HpyAV CCTTC 3 cut(s) 101, 137, 268
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 137, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 210
Kzo9I GATC 2 cut(s) 189, 314
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 2 cut(s) 124, 183
MaeII ACGT 1 cut(s) 210
MalI GATC 2 cut(s) 191, 316
MboI GATC 2 cut(s) 189, 314
MboII GAAGA 1 cut(s) 270
MfeI CAATTG 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 210, 231
MnlI CCTC 3 cut(s) 21, 48, 60
MspI CCGG 2 cut(s) 19, 45
MspR9I CCNGG 2 cut(s) 19, 312
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 171
NciI CCSGG 1 cut(s) 19
NdeII GATC 2 cut(s) 189, 314
NlaIV GGNNCC 3 cut(s) 148, 149, 185
PceI AGGCCT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 2 cut(s) 103, 357
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 2 cut(s) 173, 295
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 148, 149, 185
PspOMI GGGCCC 1 cut(s) 147
PspPI GGNCC 3 cut(s) 147, 148, 184
RsaI GTAC 2 cut(s) 87, 354
RsaNI GTAC 2 cut(s) 86, 353
SatI GCNGC 2 cut(s) 172, 294
Sau3AI GATC 2 cut(s) 189, 314
Sau96I GGNCC 3 cut(s) 147, 148, 184
ScaI AGTACT 1 cut(s) 87
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 19, 312
SduI GDGCHC 1 cut(s) 151
SetI ASST 5 cut(s) 126, 213, 339, 349, 369
SfaNI GCATC 2 cut(s) 124, 183
SinI GGWCC 1 cut(s) 184
Sse9I AATT 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 2 cut(s) 31, 171
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 17, 310
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 213
TaqI TCGA 6 cut(s) 5, 53, 141, 177, 192, 360
TasI AATT 1 cut(s) 95
TatI WGTACW 1 cut(s) 85
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 103, 357
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 184
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.