Rmu_sc0004935.1_g000033

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004935.1
OG0018459
Physical Location & Seq
Reverse (-)
156183 .. 156745
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004935.1_g000033.1.cds

Sequence Viewer

Length: 336 bp
atgaagccgaaaataatttcactaggacttttggatgaggcctttgggtcgttagaaatcacagtgggaattccaaataggcaacgtgctggagagatctgggaatctcttgatgtacttgagaattgggttttggaattgtttggtaacatcataaaaggtccccatgtaaatctggaattcaaggcagaaggtccaatttggaaagctggaaaactttacaggctagaggctgttaaagatgttcagtgggagaggagaggcagcaaccaatacacccaagcggatattgatcaagtgcgaaataagtgggggaagtttgttgtcaacacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

111

Amino Acids

12.72

Weight (kDa)

6.59

Isoelectric Point (pI)

9.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018459)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23070
rosa_chinensis RchiOBHm_Chr2g0132461 RchiOBHm_Chr5g0044431 RchiOBHm_Chr6g0278561
rosa_laevigata RLG00000018508
rosa_multiflora Rmu_sc0000159.1_g000019 Rmu_sc0000723.1_g000010 Rmu_sc0004935.1_g000033
rosa_rugosa Rorug05G0214000
rosa_wichuraiana Rw1G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 284
AcsI RAATTY 2 cut(s) 69, 179
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 2 cut(s) 69, 179
AspS9I GGNCC 2 cut(s) 161, 194
AvaII GGWCC 2 cut(s) 161, 194
BbvI GCAGC 1 cut(s) 276
BclI TGATCA 1 cut(s) 292
BfaI CTAG 2 cut(s) 23, 227
BglII AGATCT 1 cut(s) 96
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme18I GGWCC 2 cut(s) 161, 194
BmgT120I GGNCC 2 cut(s) 161, 194
BmiI GGNNCC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 276
BshFI GGCC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 96, 292
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 163
BssMI GATC 2 cut(s) 96, 292
Bst4CI ACNGT 1 cut(s) 64
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 2 cut(s) 99, 295
BstMBI GATC 2 cut(s) 96, 292
BstV1I GCAGC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 2 cut(s) 69, 254
Cfr13I GGNCC 2 cut(s) 161, 194
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 167, 333
CviJI RGCY 5 cut(s) 7, 41, 209, 226, 233
CviKI_1 RGCY 5 cut(s) 7, 41, 209, 226, 233
CviQI GTAC 1 cut(s) 116
DpnI GATC 2 cut(s) 98, 294
DpnII GATC 2 cut(s) 96, 292
Eco147I AGGCCT 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 161, 194
EcoO109I RGGNCCY 1 cut(s) 161
EcoRI GAATTC 2 cut(s) 69, 179
FaeI CATG 2 cut(s) 170, 336
FaiI YATR 3 cut(s) 155, 168, 334
FaqI GGGAC 1 cut(s) 147
FatI CATG 2 cut(s) 166, 332
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 2 cut(s) 23, 227
GluI GCNGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 41
Hin1II CATG 2 cut(s) 170, 336
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 328
Hpy188III TCNNGA 2 cut(s) 110, 176
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 170, 336
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 96, 292
LpnPI CCDG 5 cut(s) 75, 85, 161, 195, 208
Lsp1109I GCAGC 1 cut(s) 276
MaeI CTAG 2 cut(s) 23, 227
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 98, 294
MboI GATC 2 cut(s) 96, 292
MflI RGATCY 1 cut(s) 96
MluCI AATT 6 cut(s) 15, 69, 124, 137, 179, 198
MnlI CCTC 4 cut(s) 31, 223, 249, 254
MseI TTAA 1 cut(s) 237
NdeII GATC 2 cut(s) 96, 292
NlaIII CATG 2 cut(s) 170, 336
NlaIV GGNNCC 1 cut(s) 163
PceI AGGCCT 1 cut(s) 41
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 161, 194
PspPPI RGGWCCY 1 cut(s) 161
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 2 cut(s) 96, 292
Sau96I GGNCC 2 cut(s) 161, 194
SetI ASST 4 cut(s) 88, 163, 196, 211
SinI GGWCC 2 cut(s) 161, 194
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 6 cut(s) 15, 69, 124, 137, 179, 198
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 1 cut(s) 284
SspMI CTAG 2 cut(s) 23, 227
StuI AGGCCT 1 cut(s) 41
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 88
TasI AATT 6 cut(s) 15, 69, 124, 137, 179, 198
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 69, 254
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 69, 254
VpaK11BI GGWCC 2 cut(s) 161, 194
XapI RAATTY 2 cut(s) 69, 179
XspI CTAG 2 cut(s) 23, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.