Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002959

Physical Location & Seq

Genomic Coordinates Reverse (-)

21969784 .. 21985254

Gene Structure 15471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0214000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACATAATCTCTCAATTACAGGAACAAACCAATAAAATTGCTGCTCTTACCTTCAATACCTTTGGAACGTTGCAAAGGGATTCTCCTGCAGTCAAACTTTCTCCAAATTATCCAGAACCACCTGCTAACCCTACAGAGGATGCGGCAACTTTTGCTGAACAACCCAAGCTCATGAGTGCAGCTCTGGTTCAAGCTGCGAAGCAGTTTGATGCATTAGTTGCAGCACTACCATTAGCCGACGGAGGTGAAGAAGCACAGCTCAAAAGGATTGCAGAACTGCAGGCTGAAAATGATACTGTTGGCCAAGAACTCCAGAGACAACTGGAAGCAGCAGAGGAGGAACTAAAGCAGGTCCGCGAGTTGTTCAGCCAAGCTGCAGATAATTGTTTGAATTTGAAGAAACCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

137

Amino Acids

14.93

Weight (kDa)

4.44

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	1 - 127	2.6e-26	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08320 AT1G08320 AT1G08320 AT1G08320 AT1G08320
fragaria_vesca	FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830
malus_domestica	MD03G1143600.v1.1 MD11G1164300.v1.1
prunus_persica	Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1
pyrus_communis	pycom03g09870 pycom11g13570
rosa_chinensis	RchiOBHm_Chr5g0044421
rosa_laevigata	RLG00000034273
rosa_multiflora	Rmu_sc0007129.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036540
rosa_rugosa	Rorug05G0213900 Rorug05G0214000
rosa_samantha	Rh5AG298400 Rh5BG305700 Rh5CG332700 Rh5DG314900
rosa_wichuraiana	Rw5G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
Acc36I	ACCTGC	2 cut(s)	133, 343
AccII	CGCG	1 cut(s)	360
AciI	CCGC	2 cut(s)	146, 358
AclI	AACGTT	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	58, 194, 394, 400
AluBI	AGCT	5 cut(s)	172, 185, 197, 262, 377
AluI	AGCT	5 cut(s)	172, 185, 197, 262, 377
Alw26I	GTCTC	1 cut(s)	313
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	6 cut(s)	44, 182, 197, 224, 332, 377
ApoI	RAATTY	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	306
BbvI	GCAGC	6 cut(s)	31, 184, 194, 236, 344, 364
BcoDI	GTCTC	1 cut(s)	313
BfmI	CTRYAG	4 cut(s)	90, 135, 281, 378
BfuAI	ACCTGC	2 cut(s)	133, 343
BisI	GCNGC	7 cut(s)	45, 147, 183, 198, 225, 333, 378
BlsI	GCNGC	7 cut(s)	46, 148, 184, 199, 226, 334, 379
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmsI	GCATC	2 cut(s)	133, 202
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
BpmI	CTGGAG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	6 cut(s)	31, 184, 194, 236, 344, 364
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	146, 358
BspANI	GGCC	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	174
BspMAI	CTGCAG	3 cut(s)	94, 285, 382
BspMI	ACCTGC	2 cut(s)	133, 343
BsrI	ACTGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	301
BstAPI	GCANNNNNTGC	2 cut(s)	155, 221
BstC8I	GCNNGC	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 221
BstSFI	CTRYAG	4 cut(s)	90, 135, 281, 378
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	6 cut(s)	31, 184, 194, 236, 344, 364
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	148
BveI	ACCTGC	2 cut(s)	133, 343
Cac8I	GCNNGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	355
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	9 cut(s)	172, 185, 197, 239, 262, 287, 306, 372, 377
CviKI_1	RGCY	9 cut(s)	172, 185, 197, 239, 262, 287, 306, 372, 377
EaeI	YGGCCR	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	8, 176
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	7 cut(s)	45, 147, 183, 198, 225, 333, 378
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	7 cut(s)	45, 147, 183, 198, 225, 333, 378
GluI	GCNGC	7 cut(s)	45, 147, 183, 198, 225, 333, 378
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	260
Hpy188III	TCNNGA	3 cut(s)	116, 175, 316
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	8 cut(s)	76, 92, 182, 215, 224, 275, 283, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 221
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	178
LpnPI	CCDG	9 cut(s)	8, 102, 129, 138, 173, 269, 311, 329, 338
Lsp1109I	GCAGC	6 cut(s)	31, 184, 194, 236, 344, 364
LweI	GCATC	2 cut(s)	133, 202
MaeII	ACGT	1 cut(s)	71
MboII	GAAGA	2 cut(s)	263, 412
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	5 cut(s)	17, 39, 109, 385, 394
MluNI	TGGCCA	1 cut(s)	306
MnlI	CCTC	4 cut(s)	133, 239, 331, 334
Mox20I	TGGCCA	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	1 cut(s)	412
Msp20I	TGGCCA	1 cut(s)	306
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	155, 221
NlaIII	CATG	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	217
PagI	TCATGA	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	46, 148, 184, 199, 226, 334, 379
Psp1406I	AACGTT	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	3 cut(s)	94, 285, 382
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	7 cut(s)	45, 147, 183, 198, 225, 333, 378
Sau96I	GGNCC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	133, 202
SfcI	CTRYAG	4 cut(s)	90, 135, 281, 378
SinI	GGWCC	1 cut(s)	355
Sse9I	AATT	5 cut(s)	17, 39, 109, 385, 394
SsiI	CCGC	2 cut(s)	146, 358
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	74
TasI	AATT	5 cut(s)	17, 39, 109, 385, 394
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TseI	GCWGC	6 cut(s)	44, 182, 197, 224, 332, 377
TspGWI	ACGGA	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.