transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08320 AT1G08320 AT1G08320 AT1G08320 AT1G08320 |
| fragaria_vesca | FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 |
| malus_domestica | MD03G1143600.v1.1 MD11G1164300.v1.1 |
| prunus_persica | Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 |
| pyrus_communis | pycom03g09870 pycom11g13570 |
| rosa_chinensis | RchiOBHm_Chr5g0044421 |
| rosa_laevigata | RLG00000034273 |
| rosa_multiflora | Rmu_sc0007129.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00036540 |
| rosa_rugosa | Rorug05G0213900 Rorug05G0214000 |
| rosa_samantha | Rh5AG298400 Rh5BG305700 Rh5CG332700 Rh5DG314900 |
| rosa_wichuraiana | Rw5G027610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1234 |
| AccB1I | GGYRCC | 1 cut(s) | 866 |
| AccII | CGCG | 3 cut(s) | 274, 841, 843 |
| AciI | CCGC | 5 cut(s) | 89, 117, 132, 274, 757 |
| AclI | AACGTT | 1 cut(s) | 1123 |
| AclWI | GGATC | 2 cut(s) | 241, 1226 |
| AcoI | YGGCCR | 1 cut(s) | 371 |
| AcsI | RAATTY | 1 cut(s) | 1101 |
| AcuI | CTGAAG | 1 cut(s) | 989 |
| AfaI | GTAC | 2 cut(s) | 53, 780 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 399, 1138 |
| AflIII | ACRYGT | 1 cut(s) | 23 |
| AgsI | TTSAA | 4 cut(s) | 356, 408, 563, 681 |
| AjnI | CCWGG | 1 cut(s) | 654 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1113, 1145 |
| Alw21I | GWGCWC | 1 cut(s) | 1164 |
| Alw26I | GTCTC | 2 cut(s) | 102, 712 |
| AlwI | GGATC | 2 cut(s) | 241, 1226 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 902 |
| AoxI | GGCC | 2 cut(s) | 338, 371 |
| ApeKI | GCWGC | 5 cut(s) | 344, 533, 743, 902, 1067 |
| ApoI | RAATTY | 1 cut(s) | 1101 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 360 |
| AspLEI | GCGC | 5 cut(s) | 274, 841, 843, 845, 954 |
| AspS9I | GGNCC | 2 cut(s) | 155, 617 |
| AsuHPI | GGTGA | 2 cut(s) | 118, 158 |
| AvaII | GGWCC | 2 cut(s) | 155, 617 |
| BalI | TGGCCA | 1 cut(s) | 373 |
| BanI | GGYRCC | 1 cut(s) | 866 |
| BanII | GRGCYC | 1 cut(s) | 1164 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 502, 534 |
| BbsI | GAAGAC | 1 cut(s) | 945 |
| Bbv12I | GWGCWC | 1 cut(s) | 1164 |
| BbvI | GCAGC | 5 cut(s) | 331, 520, 730, 889, 1054 |
| BccI | CCATC | 2 cut(s) | 924, 1132 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 972, 1006 |
| BciT130I | CCWGG | 1 cut(s) | 656 |
| BclI | TGATCA | 1 cut(s) | 541 |
| BcoDI | GTCTC | 2 cut(s) | 102, 712 |
| BfaI | CTAG | 2 cut(s) | 788, 935 |
| BisI | GCNGC | 8 cut(s) | 90, 275, 345, 534, 744, 757, 903, 1068 |
| BlsI | GCNGC | 8 cut(s) | 91, 276, 346, 535, 745, 758, 904, 1069 |
| Bme1390I | CCNGG | 1 cut(s) | 656 |
| Bme18I | GGWCC | 2 cut(s) | 155, 617 |
| BmgT120I | GGNCC | 2 cut(s) | 155, 617 |
| BmiI | GGNNCC | 2 cut(s) | 492, 868 |
| BmrFI | CCNGG | 1 cut(s) | 656 |
| BmsI | GCATC | 3 cut(s) | 559, 694, 1161 |
| BpiI | GAAGAC | 1 cut(s) | 945 |
| BpmI | CTGGAG | 1 cut(s) | 1098 |
| Bpu10I | CCTNAGC | 2 cut(s) | 846, 895 |
| BpuEI | CTTGAG | 3 cut(s) | 282, 379, 839 |
| BsaJI | CCNNGG | 1 cut(s) | 654 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 399, 1138 |
| Bse118I | RCCGGY | 2 cut(s) | 869, 948 |
| Bse1I | ACTGG | 4 cut(s) | 213, 478, 492, 1102 |
| BseBI | CCWGG | 1 cut(s) | 656 |
| BseDI | CCNNGG | 1 cut(s) | 654 |
| BseGI | GGATG | 3 cut(s) | 201, 1143, 1221 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 399, 1138 |
| BseMII | CTCAG | 6 cut(s) | 62, 450, 775, 860, 909, 1149 |
| BseNI | ACTGG | 4 cut(s) | 213, 478, 492, 1102 |
| BsePI | GCGCGC | 2 cut(s) | 839, 841 |
| BseRI | GAGGAG | 1 cut(s) | 336 |
| BseXI | GCAGC | 5 cut(s) | 331, 520, 730, 889, 1054 |
| BsgI | GTGCAG | 1 cut(s) | 729 |
| Bsh1236I | CGCG | 3 cut(s) | 274, 841, 843 |
| BshFI | GGCC | 2 cut(s) | 340, 373 |
| BshNI | GGYRCC | 1 cut(s) | 866 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1164 |
| BsiSI | CCGG | 2 cut(s) | 870, 949 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 399, 1138 |
| BsmAI | GTCTC | 2 cut(s) | 102, 712 |
| BsmBI | CGTCTC | 2 cut(s) | 102, 712 |
| BsnI | GGCC | 2 cut(s) | 340, 373 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1164 |
| Bsp1407I | TGTACA | 1 cut(s) | 778 |
| Bsp143I | GATC | 4 cut(s) | 233, 541, 1000, 1218 |
| BspACI | CCGC | 5 cut(s) | 89, 117, 132, 274, 757 |
| BspANI | GGCC | 2 cut(s) | 340, 373 |
| BspCNI | CTCAG | 6 cut(s) | 63, 449, 774, 859, 908, 1150 |
| BspFNI | CGCG | 3 cut(s) | 274, 841, 843 |
| BspLI | GGNNCC | 2 cut(s) | 492, 868 |
| BspPI | GGATC | 2 cut(s) | 241, 1226 |
| BspT107I | GGYRCC | 1 cut(s) | 866 |
| BsrFI | RCCGGY | 2 cut(s) | 869, 948 |
| BsrGI | TGTACA | 1 cut(s) | 778 |
| BsrI | ACTGG | 4 cut(s) | 213, 478, 492, 1102 |
| BssAI | RCCGGY | 2 cut(s) | 869, 948 |
| BssECI | CCNNGG | 1 cut(s) | 654 |
| BssHII | GCGCGC | 2 cut(s) | 839, 841 |
| BssMI | GATC | 4 cut(s) | 233, 541, 1000, 1218 |
| Bst2UI | CCWGG | 1 cut(s) | 656 |
| Bst4CI | ACNGT | 4 cut(s) | 124, 159, 1185, 1230 |
| Bst6I | CTCTTC | 1 cut(s) | 656 |
| BstAUI | TGTACA | 1 cut(s) | 778 |
| BstC8I | GCNNGC | 5 cut(s) | 334, 338, 342, 841, 843 |
| BstDEI | CTNAG | 8 cut(s) | 71, 436, 708, 761, 846, 895, 1010, 1158 |
| BstF5I | GGATG | 3 cut(s) | 201, 1143, 1221 |
| BstFNI | CGCG | 3 cut(s) | 274, 841, 843 |
| BstHHI | GCGC | 5 cut(s) | 274, 841, 843, 845, 954 |
| BstKTI | GATC | 4 cut(s) | 236, 544, 1003, 1221 |
| BstMAI | GTCTC | 2 cut(s) | 102, 712 |
| BstMBI | GATC | 4 cut(s) | 233, 541, 1000, 1218 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 814, 891 |
| BstNI | CCWGG | 1 cut(s) | 656 |
| BstNSI | RCATGY | 2 cut(s) | 27, 958 |
| BstSCI | CCNGG | 1 cut(s) | 654 |
| BstUI | CGCG | 3 cut(s) | 274, 841, 843 |
| BstV1I | GCAGC | 5 cut(s) | 331, 520, 730, 889, 1054 |
| BstV2I | GAAGAC | 1 cut(s) | 945 |
| BstX2I | RGATCY | 1 cut(s) | 233 |
| BstYI | RGATCY | 1 cut(s) | 233 |
| BsuRI | GGCC | 2 cut(s) | 340, 373 |
| BtsCI | GGATG | 3 cut(s) | 201, 1143, 1221 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 5 cut(s) | 334, 338, 342, 841, 843 |
| CaiI | CAGNNNCTG | 1 cut(s) | 902 |
| CfoI | GCGC | 5 cut(s) | 274, 841, 843, 845, 954 |
| Cfr10I | RCCGGY | 2 cut(s) | 869, 948 |
| Cfr13I | GGNCC | 2 cut(s) | 155, 617 |
| CseI | GACGC | 1 cut(s) | 119 |
| Csp6I | GTAC | 2 cut(s) | 52, 779 |
| CviAII | CATG | 7 cut(s) | 24, 85, 191, 505, 916, 955, 1213 |
| CviQI | GTAC | 2 cut(s) | 52, 779 |
| DdeI | CTNAG | 8 cut(s) | 71, 436, 708, 761, 846, 895, 1010, 1158 |
| DpnI | GATC | 4 cut(s) | 235, 543, 1002, 1220 |
| DpnII | GATC | 4 cut(s) | 233, 541, 1000, 1218 |
| EaeI | YGGCCR | 1 cut(s) | 371 |
| Eam1104I | CTCTTC | 1 cut(s) | 656 |
| EarI | CTCTTC | 1 cut(s) | 656 |
| Ecl136II | GAGCTC | 1 cut(s) | 1162 |
| Eco147I | AGGCCT | 1 cut(s) | 340 |
| Eco24I | GRGCYC | 1 cut(s) | 1164 |
| Eco47I | GGWCC | 2 cut(s) | 155, 617 |
| Eco53kI | GAGCTC | 1 cut(s) | 1162 |
| Eco57I | CTGAAG | 1 cut(s) | 989 |
| EcoICRI | GAGCTC | 1 cut(s) | 1162 |
| EcoO109I | RGGNCCY | 1 cut(s) | 617 |
| EcoRII | CCWGG | 1 cut(s) | 654 |
| EcoT38I | GRGCYC | 1 cut(s) | 1164 |
| Esp3I | CGTCTC | 2 cut(s) | 102, 712 |
| FaeI | CATG | 7 cut(s) | 27, 88, 194, 508, 919, 958, 1216 |
| FatI | CATG | 7 cut(s) | 23, 84, 190, 504, 915, 954, 1212 |
| FbaI | TGATCA | 1 cut(s) | 541 |
| Fnu4HI | GCNGC | 8 cut(s) | 90, 275, 345, 534, 744, 757, 903, 1068 |
| FokI | GGATG | 3 cut(s) | 208, 1150, 1208 |
| FriOI | GRGCYC | 1 cut(s) | 1164 |
| Fsp4HI | GCNGC | 8 cut(s) | 90, 275, 345, 534, 744, 757, 903, 1068 |
| FspBI | CTAG | 2 cut(s) | 788, 935 |
| GlaI | GCGC | 5 cut(s) | 273, 840, 842, 844, 953 |
| GluI | GCNGC | 8 cut(s) | 90, 275, 345, 534, 744, 757, 903, 1068 |
| GsuI | CTGGAG | 1 cut(s) | 1098 |
| HaeIII | GGCC | 2 cut(s) | 340, 373 |
| HapII | CCGG | 2 cut(s) | 870, 949 |
| HgaI | GACGC | 1 cut(s) | 119 |
| HhaI | GCGC | 5 cut(s) | 274, 841, 843, 845, 954 |
| Hin1II | CATG | 7 cut(s) | 27, 88, 194, 508, 919, 958, 1216 |
| Hin6I | GCGC | 5 cut(s) | 272, 839, 841, 843, 952 |
| HinP1I | GCGC | 5 cut(s) | 272, 839, 841, 843, 952 |
| HindIII | AAGCTT | 1 cut(s) | 806 |
| HinfI | GANTC | 8 cut(s) | 32, 94, 149, 381, 434, 440, 497, 791 |
| HpaII | CCGG | 2 cut(s) | 870, 949 |
| HphI | GGTGA | 2 cut(s) | 118, 158 |
| Hpy166II | GTNNAC | 2 cut(s) | 451, 1018 |
| Hpy188III | TCNNGA | 9 cut(s) | 29, 153, 227, 353, 396, 414, 612, 1135, 1168 |
| Hpy8I | GTNNAC | 2 cut(s) | 451, 1018 |
| HpyAV | CCTTC | 5 cut(s) | 216, 224, 320, 528, 661 |
| HpyCH4III | ACNGT | 4 cut(s) | 124, 159, 1185, 1230 |
| HpyCH4IV | ACGT | 2 cut(s) | 721, 1123 |
| HpyCH4V | TGCA | 5 cut(s) | 84, 347, 746, 905, 926 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 814, 891 |
| HpyF3I | CTNAG | 8 cut(s) | 71, 436, 708, 761, 846, 895, 1010, 1158 |
| HpySE526I | ACGT | 2 cut(s) | 721, 1123 |
| Hsp92II | CATG | 7 cut(s) | 27, 88, 194, 508, 919, 958, 1216 |
| HspAI | GCGC | 5 cut(s) | 272, 839, 841, 843, 952 |
| Ksp22I | TGATCA | 1 cut(s) | 541 |
| Kzo9I | GATC | 4 cut(s) | 233, 541, 1000, 1218 |
| LmnI | GCTCC | 4 cut(s) | 253, 329, 646, 671 |
| Lsp1109I | GCAGC | 5 cut(s) | 331, 520, 730, 889, 1054 |
| LweI | GCATC | 3 cut(s) | 559, 694, 1161 |
| MaeI | CTAG | 2 cut(s) | 788, 935 |
| MaeII | ACGT | 2 cut(s) | 721, 1123 |
| MaeIII | GTNAC | 3 cut(s) | 124, 602, 975 |
| MalI | GATC | 4 cut(s) | 235, 543, 1002, 1220 |
| MboI | GATC | 4 cut(s) | 233, 541, 1000, 1218 |
| MboII | GAAGA | 9 cut(s) | 6, 34, 179, 272, 434, 513, 673, 950, 995 |
| MfeI | CAATTG | 1 cut(s) | 267 |
| MflI | RGATCY | 1 cut(s) | 233 |
| MhlI | GDGCHC | 1 cut(s) | 1164 |
| MlsI | TGGCCA | 1 cut(s) | 373 |
| MluCI | AATT | 6 cut(s) | 267, 578, 597, 622, 1101, 1208 |
| MluNI | TGGCCA | 1 cut(s) | 373 |
| MlyI | GAGTC | 3 cut(s) | 103, 428, 800 |
| MmeI | TCCRAC | 3 cut(s) | 85, 462, 939 |
| Mox20I | TGGCCA | 1 cut(s) | 373 |
| MroXI | GAANNNNTTC | 1 cut(s) | 360 |
| MscI | TGGCCA | 1 cut(s) | 373 |
| MseI | TTAA | 1 cut(s) | 222 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1038, 1169 |
| Msp20I | TGGCCA | 1 cut(s) | 373 |
| MspA1I | CMGCKG | 3 cut(s) | 134, 1054, 1118 |
| MspI | CCGG | 2 cut(s) | 870, 949 |
| MspR9I | CCNGG | 1 cut(s) | 656 |
| MunI | CAATTG | 1 cut(s) | 267 |
| MvaI | CCWGG | 1 cut(s) | 656 |
| MvnI | CGCG | 3 cut(s) | 274, 841, 843 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 814, 891 |
| NdeII | GATC | 4 cut(s) | 233, 541, 1000, 1218 |
| NlaIII | CATG | 7 cut(s) | 27, 88, 194, 508, 919, 958, 1216 |
| NlaIV | GGNNCC | 2 cut(s) | 492, 868 |
| NmuCI | GTSAC | 2 cut(s) | 124, 602 |
| NspI | RCATGY | 2 cut(s) | 27, 958 |
| PauI | GCGCGC | 2 cut(s) | 839, 841 |
| PceI | AGGCCT | 1 cut(s) | 340 |
| PciI | ACATGT | 1 cut(s) | 23 |
| PdmI | GAANNNNTTC | 1 cut(s) | 360 |
| PfeI | GAWTC | 5 cut(s) | 32, 149, 381, 440, 497 |
| PkrI | GCNGC | 8 cut(s) | 91, 276, 346, 535, 745, 758, 904, 1069 |
| PleI | GAGTC | 3 cut(s) | 102, 428, 799 |
| PpsI | GAGTC | 3 cut(s) | 102, 428, 799 |
| PpuMI | RGGWCCY | 1 cut(s) | 617 |
| PscI | ACATGT | 1 cut(s) | 23 |
| PsiI | TTATAA | 1 cut(s) | 1234 |
| Psp124BI | GAGCTC | 1 cut(s) | 1164 |
| Psp1406I | AACGTT | 1 cut(s) | 1123 |
| Psp5II | RGGWCCY | 1 cut(s) | 617 |
| Psp6I | CCWGG | 1 cut(s) | 654 |
| PspGI | CCWGG | 1 cut(s) | 654 |
| PspN4I | GGNNCC | 2 cut(s) | 492, 868 |
| PspPI | GGNCC | 2 cut(s) | 155, 617 |
| PspPPI | RGGWCCY | 1 cut(s) | 617 |
| PstNI | CAGNNNCTG | 1 cut(s) | 902 |
| PsuI | RGATCY | 1 cut(s) | 233 |
| PteI | GCGCGC | 2 cut(s) | 839, 841 |
| PvuII | CAGCTG | 2 cut(s) | 1054, 1118 |
| RsaI | GTAC | 2 cut(s) | 53, 780 |
| RsaNI | GTAC | 2 cut(s) | 52, 779 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1038, 1169 |
| SacI | GAGCTC | 1 cut(s) | 1164 |
| SaqAI | TTAA | 1 cut(s) | 222 |
| SatI | GCNGC | 8 cut(s) | 90, 275, 345, 534, 744, 757, 903, 1068 |
| Sau3AI | GATC | 4 cut(s) | 233, 541, 1000, 1218 |
| Sau96I | GGNCC | 2 cut(s) | 155, 617 |
| SchI | GAGTC | 3 cut(s) | 103, 428, 800 |
| ScrFI | CCNGG | 1 cut(s) | 656 |
| SduI | GDGCHC | 1 cut(s) | 1164 |
| SfaNI | GCATC | 3 cut(s) | 559, 694, 1161 |
| SgrAI | CRCCGGYG | 1 cut(s) | 948 |
| SinI | GGWCC | 2 cut(s) | 155, 617 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1038, 1169 |
| SmlI | CTYRAG | 3 cut(s) | 297, 394, 818 |
| SmoI | CTYRAG | 3 cut(s) | 297, 394, 818 |
| Sse9I | AATT | 6 cut(s) | 267, 578, 597, 622, 1101, 1208 |
| SseBI | AGGCCT | 1 cut(s) | 340 |
| SsiI | CCGC | 5 cut(s) | 89, 117, 132, 274, 757 |
| SspI | AATATT | 1 cut(s) | 909 |
| SspMI | CTAG | 2 cut(s) | 788, 935 |
| SstI | GAGCTC | 1 cut(s) | 1164 |
| StuI | AGGCCT | 1 cut(s) | 340 |
| StyD4I | CCNGG | 1 cut(s) | 654 |
| TaaI | ACNGT | 4 cut(s) | 124, 159, 1185, 1230 |
| TaiI | ACGT | 2 cut(s) | 724, 1126 |
| TasI | AATT | 6 cut(s) | 267, 578, 597, 622, 1101, 1208 |
| TatI | WGTACW | 2 cut(s) | 51, 778 |
| TauI | GCSGC | 3 cut(s) | 92, 277, 759 |
| TfiI | GAWTC | 5 cut(s) | 32, 149, 381, 440, 497 |
| Tru1I | TTAA | 1 cut(s) | 222 |
| Tru9I | TTAA | 1 cut(s) | 222 |
| TscAI | CASTG | 1 cut(s) | 127 |
| TseFI | GTSAC | 2 cut(s) | 124, 602 |
| TseI | GCWGC | 5 cut(s) | 344, 533, 743, 902, 1067 |
| Tsp45I | GTSAC | 2 cut(s) | 124, 602 |
| TspDTI | ATGAA | 7 cut(s) | 75, 179, 212, 306, 821, 1056, 1201 |
| TspGWI | ACGGA | 1 cut(s) | 1035 |
| TspRI | CASTG | 1 cut(s) | 127 |
| VpaK11BI | GGWCC | 2 cut(s) | 155, 617 |
| XapI | RAATTY | 1 cut(s) | 1101 |
| XceI | RCATGY | 2 cut(s) | 27, 958 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 43, 1094 |
| XmnI | GAANNNNTTC | 1 cut(s) | 360 |
| XspI | CTAG | 2 cut(s) | 788, 935 |