Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002959

Physical Location & Seq

Genomic Coordinates Reverse (-)

8633409 .. 8636838

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGTATGCATGATTTTAAAGTGTTTATTATTGTTGCTGTAGGTGCTGCAATATTTGATATGGAATATGCAAGATGGCTAGAAGACGACCACCGGCACATGTCGGAGCTCCGAACAGGGTTACAAGCACATTTGTCGGACAGCGATCTTCGACTAGTTGTGGACGGCTATGTTTCTCACTACGATGAAATCTTCCAGCTGAAAGGAATGGCTGCAAAATCTGATGTGTTCCACCTCATAACTGGAATGTGGACGACTCCAGCTGAACGTTGCTTCCTCTGGATGGGTGGTTTTAGACCCTCTGAGCTCATCAAGATGTTAATAGCACAGTTAGACCCACTAACAGAACAGCAATTCATGGGGATCGATAATCTGCAACAGTCCTCACAACAAGCTGAAGAGGCTCTTACTCAAGGTCTAGAGCAGCTTCATCAGTCTCTGGTCGACACCATTGCCGGCGGGCCAGTCATCGATGGCATGCAACAGATGGCCGTGGCTTTGGGCAAGCTCACCAATCTTGAAGGCTTCGTTCGCCAGGCTGATAATTTGAGACAACAAACCCTTCATCAGTTACGTCGGATATTGACAGTTCGTCAGGCAGCGAGATGCTTTCTTGTAATCGGAGAGTACTATGGACGATTAAGAGCACTTAGTTCTCTTTGGGCATCTCGACCCCGAGAGACCATGATAAGCGATGATAACTCGTGCCAAACGACGACAGACCTGCAAATGCTACAACCTTCGCAGAATCATTTCGCATCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

256

Amino Acids

28.98

Weight (kDa)

5.42

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08320 AT1G08320 AT1G08320 AT1G08320 AT1G08320
fragaria_vesca	FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830
malus_domestica	MD03G1143600.v1.1 MD11G1164300.v1.1
prunus_persica	Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1
pyrus_communis	pycom03g09870 pycom11g13570
rosa_chinensis	RchiOBHm_Chr5g0044421
rosa_laevigata	RLG00000034273
rosa_multiflora	Rmu_sc0007129.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036540
rosa_rugosa	Rorug05G0213900 Rorug05G0214000
rosa_samantha	Rh5AG298400 Rh5BG305700 Rh5CG332700 Rh5DG314900
rosa_wichuraiana	Rw5G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	459
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	521
AhdI	GACNNNNNGTC	1 cut(s)	591
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	534
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	7 cut(s)	109, 199, 263, 307, 395, 427, 508
AluI	AGCT	7 cut(s)	109, 199, 263, 307, 395, 427, 508
Alw21I	GWGCWC	3 cut(s)	111, 309, 649
Alw26I	GTCTC	3 cut(s)	441, 544, 674
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	675
AoxI	GGCC	2 cut(s)	461, 489
ApeKI	GCWGC	4 cut(s)	47, 212, 424, 599
Asp700I	GAANNNNTTC	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	675
BanII	GRGCYC	2 cut(s)	111, 309
BauI	CACGAG	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	3 cut(s)	111, 309, 649
BbvI	GCAGC	4 cut(s)	34, 199, 436, 611
BccI	CCATC	4 cut(s)	69, 277, 467, 481
BceAI	ACGGC	2 cut(s)	181, 476
BcgI	CGANNNNNNTGC	6 cut(s)	117, 151, 434, 468, 706, 740
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	3 cut(s)	441, 544, 674
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	3 cut(s)	80, 155, 419
BfmI	CTRYAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	732
BisI	GCNGC	4 cut(s)	48, 213, 425, 600
BlsI	GCNGC	4 cut(s)	49, 214, 426, 601
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	536
BmeRI	GACNNNNNGTC	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	2 cut(s)	596, 674
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	396
Bsa29I	ATCGAT	2 cut(s)	366, 471
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	2 cut(s)	93, 455
Bse1I	ACTGG	2 cut(s)	247, 464
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	536
BseCI	ATCGAT	2 cut(s)	366, 471
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	288, 758
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	247, 464
BseXI	GCAGC	4 cut(s)	34, 199, 436, 611
BshFI	GGCC	2 cut(s)	463, 491
BshVI	ATCGAT	2 cut(s)	366, 471
BsiHKAI	GWGCWC	3 cut(s)	111, 309, 649
BsiHKCI	CYCGRG	1 cut(s)	675
BsiSI	CCGG	2 cut(s)	94, 456
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	3 cut(s)	441, 544, 674
BsnI	GGCC	2 cut(s)	463, 491
Bso31I	GGTCTC	1 cut(s)	674
BsoBI	CYCGRG	1 cut(s)	675
Bsp1286I	GDGCHC	3 cut(s)	111, 309, 649
Bsp143I	GATC	2 cut(s)	145, 363
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	2 cut(s)	463, 491
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	2 cut(s)	366, 471
BspMI	ACCTGC	1 cut(s)	732
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	2 cut(s)	93, 455
BsrI	ACTGG	2 cut(s)	247, 464
BssAI	RCCGGY	2 cut(s)	93, 455
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	145, 363
BssSI	CACGAG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	330, 381, 589
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	457, 461, 479, 506
BstDEI	CTNAG	2 cut(s)	303, 650
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	288, 758
BstKTI	GATC	2 cut(s)	148, 366
BstMAI	GTCTC	3 cut(s)	441, 544, 674
BstMBI	GATC	2 cut(s)	145, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 401, 531
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	103, 481
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	34, 199, 436, 611
BstV2I	GAAGAC	1 cut(s)	90
Bsu15I	ATCGAT	2 cut(s)	366, 471
BsuRI	GGCC	2 cut(s)	463, 491
BsuTUI	ATCGAT	2 cut(s)	366, 471
BtgI	CCRYGG	1 cut(s)	492
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	288, 758
BveI	ACCTGC	1 cut(s)	732
Cac8I	GCNNGC	4 cut(s)	457, 461, 479, 506
CaiI	CAGNNNCTG	1 cut(s)	439
Cfr10I	RCCGGY	2 cut(s)	93, 455
Cfr13I	GGNCC	1 cut(s)	461
ClaI	ATCGAT	2 cut(s)	366, 471
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	5 cut(s)	11, 100, 358, 478, 685
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	2 cut(s)	303, 650
DpnI	GATC	2 cut(s)	147, 365
DpnII	GATC	2 cut(s)	145, 363
DraI	TTTAAA	1 cut(s)	19
DriI	GACNNNNNGTC	1 cut(s)	591
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	393
Eam1105I	GACNNNNNGTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	2 cut(s)	109, 307
Eco24I	GRGCYC	2 cut(s)	111, 309
Eco31I	GGTCTC	1 cut(s)	674
Eco53kI	GAGCTC	2 cut(s)	109, 307
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	675
EcoICRI	GAGCTC	2 cut(s)	109, 307
EcoRII	CCWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	12
EcoT38I	GRGCYC	2 cut(s)	111, 309
FaeI	CATG	5 cut(s)	14, 103, 361, 481, 688
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	5 cut(s)	10, 99, 357, 477, 684
FauI	CCCGC	1 cut(s)	452
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	48, 213, 425, 600
FokI	GGATG	2 cut(s)	295, 745
FriOI	GRGCYC	2 cut(s)	111, 309
Fsp4HI	GCNGC	4 cut(s)	48, 213, 425, 600
FspBI	CTAG	3 cut(s)	80, 155, 419
GluI	GCNGC	4 cut(s)	48, 213, 425, 600
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	463, 491
HapII	CCGG	2 cut(s)	94, 456
Hin1II	CATG	5 cut(s)	14, 103, 361, 481, 688
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	2 cut(s)	256, 748
HpaII	CCGG	2 cut(s)	94, 456
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	3 cut(s)	163, 252, 445
Hpy188I	TCNGA	7 cut(s)	106, 113, 139, 223, 304, 579, 623
Hpy188III	TCNNGA	5 cut(s)	280, 313, 419, 518, 669
Hpy8I	GTNNAC	3 cut(s)	163, 252, 445
Hpy99I	CGWCG	2 cut(s)	579, 718
HpyAV	CCTTC	3 cut(s)	515, 572, 750
HpyCH4III	ACNGT	3 cut(s)	330, 381, 589
HpyCH4IV	ACGT	2 cut(s)	268, 574
HpyCH4V	TGCA	7 cut(s)	10, 50, 71, 215, 376, 481, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 401, 531
HpyF3I	CTNAG	2 cut(s)	303, 650
HpySE526I	ACGT	2 cut(s)	268, 574
Hsp92II	CATG	5 cut(s)	14, 103, 361, 481, 688
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	145, 363
LmnI	GCTCC	2 cut(s)	106, 114
Lsp1109I	GCAGC	4 cut(s)	34, 199, 436, 611
LweI	GCATC	2 cut(s)	596, 674
MaeI	CTAG	3 cut(s)	80, 155, 419
MaeII	ACGT	2 cut(s)	268, 574
MaeIII	GTNAC	2 cut(s)	120, 570
MalI	GATC	2 cut(s)	147, 365
MboI	GATC	2 cut(s)	145, 363
MboII	GAAGA	4 cut(s)	95, 140, 184, 410
MhlI	GDGCHC	3 cut(s)	111, 309, 649
MluCI	AATT	2 cut(s)	353, 544
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	3 cut(s)	84, 117, 557
MnlI	CCTC	5 cut(s)	245, 287, 310, 394, 394
Mph1103I	ATGCAT	1 cut(s)	12
MroNI	GCCGGC	1 cut(s)	455
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	3 cut(s)	18, 320, 641
MslI	CAYNNNNRTG	2 cut(s)	183, 314
MspA1I	CMGCKG	2 cut(s)	199, 263
MspI	CCGG	2 cut(s)	94, 456
MspR9I	CCNGG	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	44, 401, 531
NaeI	GCCGGC	1 cut(s)	457
NdeII	GATC	2 cut(s)	145, 363
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	5 cut(s)	14, 103, 361, 481, 688
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	2 cut(s)	103, 481
PaeI	GCATGC	1 cut(s)	481
PciI	ACATGT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	710
PdiI	GCCGGC	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	1 cut(s)	748
PkrI	GCNGC	4 cut(s)	49, 214, 426, 601
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	99
Psp124BI	GAGCTC	2 cut(s)	111, 309
Psp1406I	AACGTT	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	199, 263
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	2 cut(s)	183, 314
SacI	GAGCTC	2 cut(s)	111, 309
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	18, 320, 641
SatI	GCNGC	4 cut(s)	48, 213, 425, 600
Sau3AI	GATC	2 cut(s)	145, 363
Sau96I	GGNCC	1 cut(s)	461
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	3 cut(s)	111, 309, 649
SfaNI	GCATC	2 cut(s)	596, 674
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	183, 314
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
SpeI	ACTAGT	1 cut(s)	154
SphI	GCATGC	1 cut(s)	481
Sse9I	AATT	2 cut(s)	353, 544
SsiI	CCGC	1 cut(s)	459
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	3 cut(s)	80, 155, 419
SstI	GAGCTC	2 cut(s)	111, 309
StyD4I	CCNGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	330, 381, 589
TaiI	ACGT	2 cut(s)	271, 577
TaqI	TCGA	5 cut(s)	151, 366, 444, 471, 670
TasI	AATT	2 cut(s)	353, 544
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	3 cut(s)	18, 320, 641
Tru9I	TTAA	3 cut(s)	18, 320, 641
TseI	GCWGC	4 cut(s)	47, 212, 424, 599
TspDTI	ATGAA	4 cut(s)	201, 346, 419, 554
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	2 cut(s)	103, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	3 cut(s)	80, 155, 419
ZrmI	AGTACT	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.