Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002959

Physical Location & Seq

Genomic Coordinates Reverse (-)

40940032 .. 40945282

Gene Structure 5251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCAATAAGTGACACCTCAAGAGCTACTACAGTAGCAGCAACAGGAACAACTGAAGCATCAAAAGGCCAGTCAGCTCCAAAACCAAATCATGAAAAGAGGAAGGGAGCTGGTTCTACATCAGAGAACAAACAGCTTGATGCTAAGACATTGAGGCGCTTAGCCCAAAATCGAGAAGCTGCGAGAAAAAGCCGCCTGAGGAAAAAGGCTTATGTGCAACAGCTAGAATCAAGTAGGATCAAGCTCACACAGCTTGAACAAGACCTTCAAAGAGCGCGTGCTCAGGGATTGTTGATGGGTGGGTGTGGAGGTGGTTTTGGCAATATCAGCTCAGCTGCTGCAATATTTGATATGGAATATGCAAGGTGGCTAGAAGAGGACCACCGTCACATGTCGGAGCTGCGAACCGGACTACAAGCACATTTGTCGGACAACGATCTCCGAGTCGTTGTAGATGGATACATTTCTCATTATGATGAGATTTTCCAGCTGAAAGGAGTGGCTGCGAAATCTGATGTGTTCCATCTCATAACTGGGATGTGGGCTTCTCAAGCTGAACGTTGCTTCCTTTGGATGGGCGGCTTTAGACCCTCTGACCTCATCAAGATGTTGACACAACAGTTAGACCCAATAACTGAACAGCAAGTGATGGGGATATGCAGCCTCCAACATTCATCACAACAGGCTGAAGAGGCTCTCACCCAAGGCTTAGACCAGCTTCATCAGTCTCTCATCGACACCATCGCCGGTGGACCCGTCATAGACGGCATGCAACAGATGGCCGTGGCTCTGGGCAAGCTCACTAATCTTGAAGGCTTCGTTCGCCAGGCTGACAATTTGCGACAGCAAACCCTTCACCAGTTGCGTCGGATATTGACAGTTCGCCAAGCAGCGCGGTGCTTTATGGTAATCGGCGAGTACTATGGAAGATTAAGAGCACTTAGTTCTCTTTGGGCATCAAGACCGCGAGAGAGCATGATGAGTGATGATAACTCGTGCCAAACGACGACGGACTTGCAAATGGTTCAGCCTTCTCAAAATCATTTCTCATCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

352

Amino Acids

39.23

Weight (kDa)

8.78

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	47 - 90	3.5e-06	Basic region leucine zipper
bZIP_1	PF00170	48 - 90	8.5e-08	bZIP transcription factor
DOG1	PF14144	130 - 205	1.6e-30	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08320 AT1G08320 AT1G08320 AT1G08320 AT1G08320
fragaria_vesca	FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830
malus_domestica	MD03G1143600.v1.1 MD11G1164300.v1.1
prunus_persica	Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1
pyrus_communis	pycom03g09870 pycom11g13570
rosa_chinensis	RchiOBHm_Chr5g0044421
rosa_laevigata	RLG00000034273
rosa_multiflora	Rmu_sc0007129.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036540
rosa_rugosa	Rorug05G0213900 Rorug05G0214000
rosa_samantha	Rh5AG298400 Rh5BG305700 Rh5CG332700 Rh5DG314900
rosa_wichuraiana	Rw5G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	277, 895, 967
AciI	CCGC	4 cut(s)	193, 579, 895, 965
AclI	AACGTT	1 cut(s)	559
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	780
AcuI	CTGAAG	2 cut(s)	75, 708
AfaI	GTAC	1 cut(s)	920
AfiI	CCNNNNNNNGG	1 cut(s)	574
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	257, 269, 812
AjnI	CCWGG	1 cut(s)	825
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
Alw21I	GWGCWC	2 cut(s)	283, 940
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	67, 780
ApeKI	GCWGC	8 cut(s)	38, 179, 335, 338, 400, 503, 660, 890
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	3 cut(s)	159, 277, 895
AspS9I	GGNCC	2 cut(s)	379, 752
AsuHPI	GGTGA	2 cut(s)	691, 848
AvaII	GGWCC	2 cut(s)	379, 752
AxyI	CCTNAGG	1 cut(s)	197
BauI	CACGAG	1 cut(s)	994
Bbv12I	GWGCWC	2 cut(s)	283, 940
BbvI	GCAGC	8 cut(s)	50, 166, 322, 325, 387, 490, 672, 902
BccI	CCATC	7 cut(s)	289, 449, 531, 568, 643, 749, 772
BceAI	ACGGC	2 cut(s)	767, 781
BcgI	CGANNNNNNTGC	4 cut(s)	408, 442, 997, 1031
BciT130I	CCWGG	1 cut(s)	827
BciVI	GTATCC	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	2 cut(s)	224, 371
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	452
BlpI	GCTNAGC	2 cut(s)	160, 331
BmcAI	AGTACT	1 cut(s)	920
Bme1390I	CCNGG	1 cut(s)	827
Bme18I	GGWCC	2 cut(s)	379, 752
BmgT120I	GGNCC	2 cut(s)	379, 752
BmiI	GGNNCC	1 cut(s)	754
BmrFI	CCNGG	1 cut(s)	827
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	3 cut(s)	68, 130, 965
BmuI	ACTGGG	1 cut(s)	543
BoxI	GACNNNNGTC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	2 cut(s)	160, 331
BpuEI	CTTGAG	2 cut(s)	4, 534
BsaJI	CCNNGG	2 cut(s)	703, 783
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	3 cut(s)	70, 538, 859
Bse21I	CCTNAGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	827
BseDI	CCNNGG	2 cut(s)	703, 783
BseGI	GGATG	3 cut(s)	543, 579, 1049
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMII	CTCAG	3 cut(s)	188, 296, 345
BseNI	ACTGG	3 cut(s)	70, 538, 859
BseXI	GCAGC	8 cut(s)	50, 166, 322, 325, 387, 490, 672, 902
Bsh1236I	CGCG	3 cut(s)	277, 895, 967
BshFI	GGCC	2 cut(s)	69, 782
BsiHKAI	GWGCWC	2 cut(s)	283, 940
BsiSI	CCGG	2 cut(s)	408, 747
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	69, 782
Bsp1286I	GDGCHC	2 cut(s)	283, 940
Bsp143I	GATC	2 cut(s)	237, 436
Bsp1720I	GCTNAGC	2 cut(s)	160, 331
BspACI	CCGC	4 cut(s)	193, 579, 895, 965
BspANI	GGCC	2 cut(s)	69, 782
BspCNI	CTCAG	3 cut(s)	189, 295, 344
BspFNI	CGCG	3 cut(s)	277, 895, 967
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	754
BspPI	GGATC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	3 cut(s)	70, 538, 859
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	703, 783
BssMI	GATC	2 cut(s)	237, 436
BssSI	CACGAG	1 cut(s)	994
BssT1I	CCWWGG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	994
Bst2UI	CCWGG	1 cut(s)	827
Bst4CI	ACNGT	4 cut(s)	34, 386, 621, 880
Bst6I	CTCTTC	2 cut(s)	369, 684
BstC8I	GCNNGC	3 cut(s)	279, 770, 797
BstDEI	CTNAG	7 cut(s)	144, 160, 197, 282, 331, 709, 941
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	3 cut(s)	543, 579, 1049
BstFNI	CGCG	3 cut(s)	277, 895, 967
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	3 cut(s)	159, 277, 895
BstKTI	GATC	2 cut(s)	240, 439
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	2 cut(s)	237, 436
BstMWI	GCNNNNNNNGC	5 cut(s)	250, 327, 551, 692, 822
BstNI	CCWGG	1 cut(s)	827
BstNSI	RCATGY	2 cut(s)	394, 772
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	825
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	3 cut(s)	277, 895, 967
BstV1I	GCAGC	8 cut(s)	50, 166, 322, 325, 387, 490, 672, 902
Bsu36I	CCTNAGG	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	69, 782
BtgI	CCRYGG	1 cut(s)	783
BtgZI	GCGATG	1 cut(s)	727
BtsCI	GGATG	3 cut(s)	543, 579, 1049
Cac8I	GCNNGC	3 cut(s)	279, 770, 797
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	3 cut(s)	159, 277, 895
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	379, 752
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	1 cut(s)	919
CviAII	CATG	4 cut(s)	92, 391, 769, 976
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	7 cut(s)	144, 160, 197, 282, 331, 709, 941
DpnI	GATC	2 cut(s)	239, 438
DpnII	GATC	2 cut(s)	237, 436
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	2 cut(s)	369, 684
EarI	CTCTTC	2 cut(s)	369, 684
Eco130I	CCWWGG	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	379, 752
Eco57I	CTGAAG	2 cut(s)	75, 708
Eco81I	CCTNAGG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	825
EcoT14I	CCWWGG	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	703
FaeI	CATG	4 cut(s)	95, 394, 772, 979
FatI	CATG	4 cut(s)	91, 390, 768, 975
FokI	GGATG	3 cut(s)	550, 586, 1036
FspBI	CTAG	2 cut(s)	224, 371
GlaI	GCGC	3 cut(s)	158, 276, 894
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	69, 782
HapII	CCGG	2 cut(s)	408, 747
HgaI	GACGC	1 cut(s)	854
HhaI	GCGC	3 cut(s)	159, 277, 895
Hin1II	CATG	4 cut(s)	95, 394, 772, 979
Hin6I	GCGC	3 cut(s)	157, 275, 893
HinP1I	GCGC	3 cut(s)	157, 275, 893
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	2 cut(s)	227, 444
HpaII	CCGG	2 cut(s)	408, 747
HphI	GGTGA	2 cut(s)	691, 848
Hpy166II	GTNNAC	2 cut(s)	612, 752
Hpy188I	TCNGA	8 cut(s)	124, 397, 430, 443, 514, 595, 870, 1058
Hpy188III	TCNNGA	6 cut(s)	21, 92, 173, 604, 809, 960
Hpy8I	GTNNAC	2 cut(s)	612, 752
Hpy99I	CGWCG	3 cut(s)	870, 1009, 1012
HpyAV	CCTTC	5 cut(s)	97, 275, 806, 863, 1041
HpyCH4III	ACNGT	4 cut(s)	34, 386, 621, 880
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	6 cut(s)	217, 341, 362, 660, 772, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	250, 327, 551, 692, 822
HpyF3I	CTNAG	7 cut(s)	144, 160, 197, 282, 331, 709, 941
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	4 cut(s)	95, 394, 772, 979
HspAI	GCGC	3 cut(s)	157, 275, 893
Kzo9I	GATC	2 cut(s)	237, 436
LmnI	GCTCC	3 cut(s)	82, 107, 397
Lsp1109I	GCAGC	8 cut(s)	50, 166, 322, 325, 387, 490, 672, 902
LweI	GCATC	3 cut(s)	68, 130, 965
MaeI	CTAG	2 cut(s)	224, 371
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	2 cut(s)	11, 386
MalI	GATC	2 cut(s)	239, 438
MboI	GATC	2 cut(s)	237, 436
MboII	GAAGA	3 cut(s)	386, 701, 939
MhlI	GDGCHC	2 cut(s)	283, 940
MluCI	AATT	1 cut(s)	835
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	4 cut(s)	375, 408, 691, 848
MseI	TTAA	1 cut(s)	932
MslI	CAYNNNNRTG	2 cut(s)	474, 605
MspA1I	CMGCKG	2 cut(s)	335, 490
MspI	CCGG	2 cut(s)	408, 747
MspR9I	CCNGG	1 cut(s)	827
MvaI	CCWGG	1 cut(s)	827
MvnI	CGCG	3 cut(s)	277, 895, 967
MwoI	GCNNNNNNNGC	5 cut(s)	250, 327, 551, 692, 822
NdeII	GATC	2 cut(s)	237, 436
NlaIII	CATG	4 cut(s)	95, 394, 772, 979
NlaIV	GGNNCC	1 cut(s)	754
NmuCI	GTSAC	2 cut(s)	11, 386
NspI	RCATGY	2 cut(s)	394, 772
PaeI	GCATGC	1 cut(s)	772
PagI	TCATGA	1 cut(s)	91
PciI	ACATGT	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	1001
PfeI	GAWTC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PscI	ACATGT	1 cut(s)	390
PshAI	GACNNNNGTC	1 cut(s)	384
Psp1406I	AACGTT	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	825
PspGI	CCWGG	1 cut(s)	825
PspN4I	GGNNCC	1 cut(s)	754
PspPI	GGNCC	2 cut(s)	379, 752
PstNI	CAGNNNCTG	1 cut(s)	338
PvuII	CAGCTG	2 cut(s)	335, 490
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
RseI	CAYNNNNRTG	2 cut(s)	474, 605
SaqAI	TTAA	1 cut(s)	932
Sau3AI	GATC	2 cut(s)	237, 436
Sau96I	GGNCC	2 cut(s)	379, 752
ScaI	AGTACT	1 cut(s)	920
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	827
SduI	GDGCHC	2 cut(s)	283, 940
SfaNI	GCATC	3 cut(s)	68, 130, 965
SfcI	CTRYAG	1 cut(s)	30
SgrAI	CRCCGGYG	1 cut(s)	746
SinI	GGWCC	2 cut(s)	379, 752
SmiMI	CAYNNNNRTG	2 cut(s)	474, 605
SmlI	CTYRAG	2 cut(s)	19, 549
SmoI	CTYRAG	2 cut(s)	19, 549
SphI	GCATGC	1 cut(s)	772
Sse9I	AATT	1 cut(s)	835
SsiI	CCGC	4 cut(s)	193, 579, 895, 965
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	2 cut(s)	224, 371
StyD4I	CCNGG	1 cut(s)	825
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	4 cut(s)	34, 386, 621, 880
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	2 cut(s)	172, 735
TasI	AATT	1 cut(s)	835
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	2 cut(s)	195, 582
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	932
Tru9I	TTAA	1 cut(s)	932
TseFI	GTSAC	2 cut(s)	11, 386
TseI	GCWGC	8 cut(s)	38, 179, 335, 338, 400, 503, 660, 890
Tsp45I	GTSAC	2 cut(s)	11, 386
TspDTI	ATGAA	3 cut(s)	108, 663, 710
TspGWI	ACGGA	1 cut(s)	1025
VpaK11BI	GGWCC	2 cut(s)	379, 752
XceI	RCATGY	2 cut(s)	394, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XspI	CTAG	2 cut(s)	224, 371
ZrmI	AGTACT	1 cut(s)	920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.