transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08320 AT1G08320 AT1G08320 AT1G08320 AT1G08320 |
| fragaria_vesca | FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 |
| malus_domestica | MD03G1143600.v1.1 MD11G1164300.v1.1 |
| prunus_persica | Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 |
| pyrus_communis | pycom03g09870 pycom11g13570 |
| rosa_chinensis | RchiOBHm_Chr5g0044421 |
| rosa_laevigata | RLG00000034273 |
| rosa_multiflora | Rmu_sc0007129.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00036540 |
| rosa_rugosa | Rorug05G0213900 Rorug05G0214000 |
| rosa_samantha | Rh5AG298400 Rh5BG305700 Rh5CG332700 Rh5DG314900 |
| rosa_wichuraiana | Rw5G027610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 319 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 532 |
| AccBSI | CCGCTC | 1 cut(s) | 434 |
| AccII | CGCG | 3 cut(s) | 859, 1477, 1549 |
| AciI | CCGC | 7 cut(s) | 89, 432, 775, 915, 1161, 1477, 1547 |
| AclI | AACGTT | 1 cut(s) | 1141 |
| AclWI | GGATC | 4 cut(s) | 229, 421, 543, 827 |
| AcoI | YGGCCR | 2 cut(s) | 341, 1362 |
| AcuI | CTGAAG | 2 cut(s) | 657, 1290 |
| AfaI | GTAC | 2 cut(s) | 50, 1502 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 371, 532, 1156 |
| AflIII | ACRYGT | 2 cut(s) | 20, 972 |
| AgsI | TTSAA | 7 cut(s) | 147, 198, 381, 504, 839, 851, 1394 |
| AjnI | CCWGG | 3 cut(s) | 321, 525, 1407 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1131, 1163 |
| Alw21I | GWGCWC | 3 cut(s) | 404, 865, 1522 |
| Alw26I | GTCTC | 3 cut(s) | 107, 1314, 1417 |
| AlwI | GGATC | 4 cut(s) | 229, 421, 543, 827 |
| Ama87I | CYCGRG | 1 cut(s) | 130 |
| AoxI | GGCC | 4 cut(s) | 133, 341, 649, 1362 |
| ApaI | GGGCCC | 1 cut(s) | 137 |
| AseI | ATTAAT | 1 cut(s) | 186 |
| AspLEI | GCGC | 3 cut(s) | 741, 859, 1477 |
| AspS9I | GGNCC | 4 cut(s) | 133, 134, 191, 1334 |
| AsuHPI | GGTGA | 4 cut(s) | 143, 433, 1273, 1430 |
| AvaI | CYCGRG | 1 cut(s) | 130 |
| AvaII | GGWCC | 2 cut(s) | 191, 1334 |
| AxyI | CCTNAGG | 1 cut(s) | 779 |
| BaeGI | GKGCMC | 1 cut(s) | 137 |
| BalI | TGGCCA | 1 cut(s) | 343 |
| BanII | GRGCYC | 1 cut(s) | 137 |
| BauI | CACGAG | 1 cut(s) | 1576 |
| BbsI | GAAGAC | 2 cut(s) | 313, 963 |
| Bbv12I | GWGCWC | 3 cut(s) | 404, 865, 1522 |
| BbvCI | CCTCAGC | 1 cut(s) | 71 |
| BccI | CCATC | 7 cut(s) | 871, 1031, 1113, 1150, 1225, 1331, 1354 |
| BceAI | ACGGC | 2 cut(s) | 1349, 1363 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 990, 1024, 1579, 1613 |
| BciT130I | CCWGG | 3 cut(s) | 323, 527, 1409 |
| BciVI | GTATCC | 1 cut(s) | 1034 |
| BcoDI | GTCTC | 3 cut(s) | 107, 1314, 1417 |
| BfaI | CTAG | 3 cut(s) | 245, 806, 953 |
| BfmI | CTRYAG | 3 cut(s) | 548, 572, 612 |
| BfoI | RGCGCY | 1 cut(s) | 742 |
| BfuAI | ACCTGC | 1 cut(s) | 319 |
| BfuI | GTATCC | 1 cut(s) | 1034 |
| BlpI | GCTNAGC | 1 cut(s) | 742 |
| BmcAI | AGTACT | 1 cut(s) | 1502 |
| Bme1390I | CCNGG | 3 cut(s) | 323, 527, 1409 |
| Bme18I | GGWCC | 2 cut(s) | 191, 1334 |
| BmeT110I | CYCGRG | 1 cut(s) | 130 |
| BmgT120I | GGNCC | 4 cut(s) | 133, 134, 191, 1334 |
| BmiI | GGNNCC | 3 cut(s) | 135, 468, 1336 |
| BmrFI | CCNGG | 3 cut(s) | 323, 527, 1409 |
| BmrI | ACTGGG | 1 cut(s) | 1125 |
| BmsI | GCATC | 4 cut(s) | 503, 650, 712, 1547 |
| BmuI | ACTGGG | 1 cut(s) | 1125 |
| BoxI | GACNNNNGTC | 1 cut(s) | 966 |
| BpiI | GAAGAC | 2 cut(s) | 313, 963 |
| BpmI | CTGGAG | 1 cut(s) | 1232 |
| Bpu10I | CCTNAGC | 2 cut(s) | 71, 864 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 742 |
| BpuEI | CTTGAG | 3 cut(s) | 270, 586, 1116 |
| BsaBI | GATNNNNATC | 1 cut(s) | 540 |
| BsaJI | CCNNGG | 3 cut(s) | 321, 1285, 1365 |
| BsaWI | WCCGGW | 1 cut(s) | 989 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 371, 532, 1156 |
| Bse118I | RCCGGY | 1 cut(s) | 1328 |
| Bse1I | ACTGG | 3 cut(s) | 652, 1120, 1441 |
| Bse21I | CCTNAGG | 1 cut(s) | 779 |
| Bse8I | GATNNNNATC | 1 cut(s) | 540 |
| BseBI | CCWGG | 3 cut(s) | 323, 527, 1409 |
| BseDI | CCNNGG | 3 cut(s) | 321, 1285, 1365 |
| BseGI | GGATG | 3 cut(s) | 1125, 1161, 1631 |
| BseJI | GATNNNNATC | 1 cut(s) | 540 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 371, 532, 1156 |
| BseMII | CTCAG | 5 cut(s) | 62, 423, 473, 770, 878 |
| BseNI | ACTGG | 3 cut(s) | 652, 1120, 1441 |
| BseSI | GKGCMC | 1 cut(s) | 137 |
| Bsh1236I | CGCG | 3 cut(s) | 859, 1477, 1549 |
| BshFI | GGCC | 4 cut(s) | 135, 343, 651, 1364 |
| BsiHKAI | GWGCWC | 3 cut(s) | 404, 865, 1522 |
| BsiHKCI | CYCGRG | 1 cut(s) | 130 |
| BsiSI | CCGG | 2 cut(s) | 990, 1329 |
| BslFI | GGGAC | 1 cut(s) | 9 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 371, 532, 1156 |
| BsmAI | GTCTC | 3 cut(s) | 107, 1314, 1417 |
| BsmFI | GGGAC | 1 cut(s) | 9 |
| BsmI | GAATGC | 1 cut(s) | 1252 |
| BsnI | GGCC | 4 cut(s) | 135, 343, 651, 1364 |
| BsoBI | CYCGRG | 1 cut(s) | 130 |
| Bsp120I | GGGCCC | 1 cut(s) | 133 |
| Bsp1286I | GDGCHC | 4 cut(s) | 137, 404, 865, 1522 |
| Bsp143I | GATC | 6 cut(s) | 221, 413, 451, 535, 819, 1018 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 742 |
| BspACI | CCGC | 7 cut(s) | 89, 432, 775, 915, 1161, 1477, 1547 |
| BspANI | GGCC | 4 cut(s) | 135, 343, 651, 1364 |
| BspCNI | CTCAG | 5 cut(s) | 63, 422, 472, 771, 877 |
| BspFNI | CGCG | 3 cut(s) | 859, 1477, 1549 |
| BspHI | TCATGA | 1 cut(s) | 673 |
| BspLI | GGNNCC | 3 cut(s) | 135, 468, 1336 |
| BspMI | ACCTGC | 1 cut(s) | 319 |
| BspPI | GGATC | 4 cut(s) | 229, 421, 543, 827 |
| BsrBI | CCGCTC | 1 cut(s) | 434 |
| BsrFI | RCCGGY | 1 cut(s) | 1328 |
| BsrI | ACTGG | 3 cut(s) | 652, 1120, 1441 |
| BssAI | RCCGGY | 1 cut(s) | 1328 |
| BssECI | CCNNGG | 3 cut(s) | 321, 1285, 1365 |
| BssMI | GATC | 6 cut(s) | 221, 413, 451, 535, 819, 1018 |
| BssSI | CACGAG | 1 cut(s) | 1576 |
| BssT1I | CCWWGG | 1 cut(s) | 1285 |
| Bst2BI | CACGAG | 1 cut(s) | 1576 |
| Bst2UI | CCWGG | 3 cut(s) | 323, 527, 1409 |
| Bst4CI | ACNGT | 6 cut(s) | 172, 552, 616, 968, 1203, 1462 |
| Bst6I | CTCTTC | 1 cut(s) | 1266 |
| BstC8I | GCNNGC | 4 cut(s) | 442, 861, 1352, 1379 |
| BstDEI | CTNAG | 9 cut(s) | 71, 409, 459, 726, 742, 779, 864, 1291, 1523 |
| BstDSI | CCRYGG | 1 cut(s) | 1365 |
| BstF5I | GGATG | 3 cut(s) | 1125, 1161, 1631 |
| BstFNI | CGCG | 3 cut(s) | 859, 1477, 1549 |
| BstH2I | RGCGCY | 1 cut(s) | 742 |
| BstHHI | GCGC | 3 cut(s) | 741, 859, 1477 |
| BstKTI | GATC | 6 cut(s) | 224, 416, 454, 538, 822, 1021 |
| BstMAI | GTCTC | 3 cut(s) | 107, 1314, 1417 |
| BstMBI | GATC | 6 cut(s) | 221, 413, 451, 535, 819, 1018 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 565, 574, 832, 909, 1133, 1274, 1404 |
| BstNI | CCWGG | 3 cut(s) | 323, 527, 1409 |
| BstNSI | RCATGY | 3 cut(s) | 24, 976, 1354 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 966 |
| BstSCI | CCNGG | 3 cut(s) | 321, 525, 1407 |
| BstSFI | CTRYAG | 3 cut(s) | 548, 572, 612 |
| BstSLI | GKGCMC | 1 cut(s) | 137 |
| BstUI | CGCG | 3 cut(s) | 859, 1477, 1549 |
| BstV2I | GAAGAC | 2 cut(s) | 313, 963 |
| BstX2I | RGATCY | 1 cut(s) | 221 |
| BstYI | RGATCY | 1 cut(s) | 221 |
| Bsu36I | CCTNAGG | 1 cut(s) | 779 |
| BsuI | GTATCC | 1 cut(s) | 1034 |
| BsuRI | GGCC | 4 cut(s) | 135, 343, 651, 1364 |
| BtgI | CCRYGG | 1 cut(s) | 1365 |
| BtgZI | GCGATG | 1 cut(s) | 1309 |
| BtsCI | GGATG | 3 cut(s) | 1125, 1161, 1631 |
| BtsIMutI | CAGTG | 1 cut(s) | 168 |
| BveI | ACCTGC | 1 cut(s) | 319 |
| Cac8I | GCNNGC | 4 cut(s) | 442, 861, 1352, 1379 |
| CciI | TCATGA | 1 cut(s) | 673 |
| CfoI | GCGC | 3 cut(s) | 741, 859, 1477 |
| Cfr10I | RCCGGY | 1 cut(s) | 1328 |
| Cfr13I | GGNCC | 4 cut(s) | 133, 134, 191, 1334 |
| CseI | GACGC | 1 cut(s) | 1436 |
| Csp6I | GTAC | 2 cut(s) | 49, 1501 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 418, 453 |
| CviAII | CATG | 9 cut(s) | 21, 85, 155, 179, 583, 674, 973, 1351, 1558 |
| CviQI | GTAC | 2 cut(s) | 49, 1501 |
| DdeI | CTNAG | 9 cut(s) | 71, 409, 459, 726, 742, 779, 864, 1291, 1523 |
| DpnI | GATC | 6 cut(s) | 223, 415, 453, 537, 821, 1020 |
| DpnII | GATC | 6 cut(s) | 221, 413, 451, 535, 819, 1018 |
| EaeI | YGGCCR | 2 cut(s) | 341, 1362 |
| Eam1104I | CTCTTC | 1 cut(s) | 1266 |
| EarI | CTCTTC | 1 cut(s) | 1266 |
| Eco130I | CCWWGG | 1 cut(s) | 1285 |
| Eco24I | GRGCYC | 1 cut(s) | 137 |
| Eco47I | GGWCC | 2 cut(s) | 191, 1334 |
| Eco57I | CTGAAG | 2 cut(s) | 657, 1290 |
| Eco81I | CCTNAGG | 1 cut(s) | 779 |
| Eco88I | CYCGRG | 1 cut(s) | 130 |
| EcoO109I | RGGNCCY | 1 cut(s) | 134 |
| EcoRII | CCWGG | 3 cut(s) | 321, 525, 1407 |
| EcoT14I | CCWWGG | 1 cut(s) | 1285 |
| EcoT38I | GRGCYC | 1 cut(s) | 137 |
| ErhI | CCWWGG | 1 cut(s) | 1285 |
| FaeI | CATG | 9 cut(s) | 24, 88, 158, 182, 586, 677, 976, 1354, 1561 |
| FaqI | GGGAC | 1 cut(s) | 9 |
| FatI | CATG | 9 cut(s) | 20, 84, 154, 178, 582, 673, 972, 1350, 1557 |
| FokI | GGATG | 3 cut(s) | 1132, 1168, 1618 |
| FriOI | GRGCYC | 1 cut(s) | 137 |
| FspBI | CTAG | 3 cut(s) | 245, 806, 953 |
| GlaI | GCGC | 3 cut(s) | 740, 858, 1476 |
| GsuI | CTGGAG | 1 cut(s) | 1232 |
| HaeII | RGCGCY | 1 cut(s) | 742 |
| HaeIII | GGCC | 4 cut(s) | 135, 343, 651, 1364 |
| HapII | CCGG | 2 cut(s) | 990, 1329 |
| HgaI | GACGC | 1 cut(s) | 1436 |
| HhaI | GCGC | 3 cut(s) | 741, 859, 1477 |
| Hin1II | CATG | 9 cut(s) | 24, 88, 158, 182, 586, 677, 976, 1354, 1561 |
| Hin6I | GCGC | 3 cut(s) | 739, 857, 1475 |
| HinP1I | GCGC | 3 cut(s) | 739, 857, 1475 |
| HincII | GTYRAC | 1 cut(s) | 1194 |
| HindII | GTYRAC | 1 cut(s) | 1194 |
| HpaII | CCGG | 2 cut(s) | 990, 1329 |
| HphI | GGTGA | 4 cut(s) | 143, 433, 1273, 1430 |
| Hpy166II | GTNNAC | 4 cut(s) | 300, 424, 1194, 1334 |
| Hpy188III | TCNNGA | 9 cut(s) | 26, 215, 411, 603, 674, 755, 1186, 1391, 1542 |
| Hpy8I | GTNNAC | 4 cut(s) | 300, 424, 1194, 1334 |
| Hpy99I | CGWCG | 3 cut(s) | 1452, 1591, 1594 |
| HpyAV | CCTTC | 8 cut(s) | 147, 204, 212, 345, 857, 1388, 1445, 1623 |
| HpyCH4III | ACNGT | 6 cut(s) | 172, 552, 616, 968, 1203, 1462 |
| HpyCH4IV | ACGT | 1 cut(s) | 1141 |
| HpyCH4V | TGCA | 9 cut(s) | 84, 317, 440, 799, 923, 944, 1242, 1354, 1600 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 565, 574, 832, 909, 1133, 1274, 1404 |
| HpyF3I | CTNAG | 9 cut(s) | 71, 409, 459, 726, 742, 779, 864, 1291, 1523 |
| HpySE526I | ACGT | 1 cut(s) | 1141 |
| Hsp92II | CATG | 9 cut(s) | 24, 88, 158, 182, 586, 677, 976, 1354, 1561 |
| HspAI | GCGC | 3 cut(s) | 739, 857, 1475 |
| Kzo9I | GATC | 6 cut(s) | 221, 413, 451, 535, 819, 1018 |
| LmnI | GCTCC | 5 cut(s) | 466, 664, 689, 917, 979 |
| LweI | GCATC | 4 cut(s) | 503, 650, 712, 1547 |
| MaeI | CTAG | 3 cut(s) | 245, 806, 953 |
| MaeII | ACGT | 1 cut(s) | 1141 |
| MaeIII | GTNAC | 2 cut(s) | 593, 968 |
| MalI | GATC | 6 cut(s) | 223, 415, 453, 537, 821, 1020 |
| MbiI | CCGCTC | 1 cut(s) | 434 |
| MboI | GATC | 6 cut(s) | 221, 413, 451, 535, 819, 1018 |
| MfeI | CAATTG | 1 cut(s) | 255 |
| MflI | RGATCY | 1 cut(s) | 221 |
| MhlI | GDGCHC | 4 cut(s) | 137, 404, 865, 1522 |
| MlsI | TGGCCA | 1 cut(s) | 343 |
| MluCI | AATT | 3 cut(s) | 183, 255, 1417 |
| MluNI | TGGCCA | 1 cut(s) | 343 |
| MlyI | GAGTC | 6 cut(s) | 103, 111, 122, 401, 451, 1035 |
| MmeI | TCCRAC | 5 cut(s) | 88, 444, 957, 990, 1430 |
| Mox20I | TGGCCA | 1 cut(s) | 343 |
| MscI | TGGCCA | 1 cut(s) | 343 |
| MseI | TTAA | 2 cut(s) | 186, 1514 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1056, 1187 |
| Msp20I | TGGCCA | 1 cut(s) | 343 |
| MspA1I | CMGCKG | 2 cut(s) | 917, 1072 |
| MspI | CCGG | 2 cut(s) | 990, 1329 |
| MspR9I | CCNGG | 3 cut(s) | 323, 527, 1409 |
| MunI | CAATTG | 1 cut(s) | 255 |
| Mva1269I | GAATGC | 1 cut(s) | 1252 |
| MvaI | CCWGG | 3 cut(s) | 323, 527, 1409 |
| MvnI | CGCG | 3 cut(s) | 859, 1477, 1549 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 565, 574, 832, 909, 1133, 1274, 1404 |
| NdeII | GATC | 6 cut(s) | 221, 413, 451, 535, 819, 1018 |
| NlaIII | CATG | 9 cut(s) | 24, 88, 158, 182, 586, 677, 976, 1354, 1561 |
| NlaIV | GGNNCC | 3 cut(s) | 135, 468, 1336 |
| NmuCI | GTSAC | 2 cut(s) | 593, 968 |
| NspI | RCATGY | 3 cut(s) | 24, 976, 1354 |
| PaeI | GCATGC | 1 cut(s) | 1354 |
| PagI | TCATGA | 1 cut(s) | 673 |
| PciI | ACATGT | 2 cut(s) | 20, 972 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1583 |
| PctI | GAATGC | 1 cut(s) | 1252 |
| PfeI | GAWTC | 5 cut(s) | 29, 351, 473, 541, 809 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 532 |
| PleI | GAGTC | 6 cut(s) | 102, 110, 122, 401, 451, 1034 |
| PpsI | GAGTC | 6 cut(s) | 102, 110, 122, 401, 451, 1034 |
| PscI | ACATGT | 2 cut(s) | 20, 972 |
| PshAI | GACNNNNGTC | 1 cut(s) | 966 |
| PshBI | ATTAAT | 1 cut(s) | 186 |
| Psp1406I | AACGTT | 1 cut(s) | 1141 |
| Psp6I | CCWGG | 3 cut(s) | 321, 525, 1407 |
| PspGI | CCWGG | 3 cut(s) | 321, 525, 1407 |
| PspN4I | GGNNCC | 3 cut(s) | 135, 468, 1336 |
| PspOMI | GGGCCC | 1 cut(s) | 133 |
| PspPI | GGNCC | 4 cut(s) | 133, 134, 191, 1334 |
| PsuI | RGATCY | 1 cut(s) | 221 |
| PvuII | CAGCTG | 1 cut(s) | 1072 |
| RsaI | GTAC | 2 cut(s) | 50, 1502 |
| RsaNI | GTAC | 2 cut(s) | 49, 1501 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1056, 1187 |
| SaqAI | TTAA | 2 cut(s) | 186, 1514 |
| Sau3AI | GATC | 6 cut(s) | 221, 413, 451, 535, 819, 1018 |
| Sau96I | GGNCC | 4 cut(s) | 133, 134, 191, 1334 |
| ScaI | AGTACT | 1 cut(s) | 1502 |
| SchI | GAGTC | 6 cut(s) | 103, 111, 122, 401, 451, 1035 |
| ScrFI | CCNGG | 3 cut(s) | 323, 527, 1409 |
| SduI | GDGCHC | 4 cut(s) | 137, 404, 865, 1522 |
| SfaNI | GCATC | 4 cut(s) | 503, 650, 712, 1547 |
| SfcI | CTRYAG | 3 cut(s) | 548, 572, 612 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1328 |
| SinI | GGWCC | 2 cut(s) | 191, 1334 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1056, 1187 |
| SmlI | CTYRAG | 3 cut(s) | 285, 601, 1131 |
| SmoI | CTYRAG | 3 cut(s) | 285, 601, 1131 |
| SphI | GCATGC | 1 cut(s) | 1354 |
| Sse9I | AATT | 3 cut(s) | 183, 255, 1417 |
| SsiI | CCGC | 7 cut(s) | 89, 432, 775, 915, 1161, 1477, 1547 |
| SspI | AATATT | 1 cut(s) | 927 |
| SspMI | CTAG | 3 cut(s) | 245, 806, 953 |
| StyD4I | CCNGG | 3 cut(s) | 321, 525, 1407 |
| StyI | CCWWGG | 1 cut(s) | 1285 |
| TaaI | ACNGT | 6 cut(s) | 172, 552, 616, 968, 1203, 1462 |
| TaiI | ACGT | 1 cut(s) | 1144 |
| TaqI | TCGA | 2 cut(s) | 754, 1317 |
| TasI | AATT | 3 cut(s) | 183, 255, 1417 |
| TatI | WGTACW | 2 cut(s) | 48, 1500 |
| TauI | GCSGC | 3 cut(s) | 92, 777, 1164 |
| TfiI | GAWTC | 5 cut(s) | 29, 351, 473, 541, 809 |
| Tru1I | TTAA | 2 cut(s) | 186, 1514 |
| Tru9I | TTAA | 2 cut(s) | 186, 1514 |
| TscAI | CASTG | 1 cut(s) | 175 |
| TseFI | GTSAC | 2 cut(s) | 593, 968 |
| Tsp45I | GTSAC | 2 cut(s) | 593, 968 |
| TspDTI | ATGAA | 6 cut(s) | 72, 167, 294, 690, 1245, 1292 |
| TspGWI | ACGGA | 1 cut(s) | 1607 |
| TspRI | CASTG | 1 cut(s) | 175 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 532 |
| VpaK11BI | GGWCC | 2 cut(s) | 191, 1334 |
| VspI | ATTAAT | 1 cut(s) | 186 |
| XceI | RCATGY | 3 cut(s) | 24, 976, 1354 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 40, 1112 |
| XspI | CTAG | 3 cut(s) | 245, 806, 953 |
| ZrmI | AGTACT | 1 cut(s) | 1502 |