Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002959

Physical Location & Seq

Genomic Coordinates Forward (+)

21957825 .. 21969215

Gene Structure 11391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0213900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGAAAAAAGGTGATTTGGTCGCTGCTGCGAGTATTTTCACTACTGCAAATTCTGCAATTGAAACTGAAGGTGCTGCTCTTATACATGGACTGAAAATGGCTATTGGCTATTTTGGGAAGGGAAATTGGAGAATCTATCCTTTCCTAAATGAGTTTCATAAACTCAAATCCTCCTTTACAAGCTTGGAATGGGTCTGGGTAACTAGAGAAGCTAACCGCGCTGCTGATGCCGCGGCCAAGCTAGCTAGAAAGACGTCGTGCACTCAAGTTTCGACCGATGGTCCTCCAACCTCTATGATCGATGTTCTGGTGAATGATGGCCTCCCATGCCCACTGGGAGCATTATTTGACATTGCAAGGACTCTAGGCAAGACCGATTGGAATTTCAGTACCGATCCATGTCAGGGAGGAGGTGATGGGTGGCCTGGTATCAAGTGCAACTGTTCCAGTATCTGCTACGTGAGAAGCATAGTTTTGAAGGGGCAGAATTTGACAGGAAAACTACCGCCAGAGTTGATCAGGCTCCCTTATCTCCAAGAAATTGACCTCAGCCGCAACTACCTGAATGGTACAATCCCTCCAGAATGGGGCTCCCTGCCATTAGTTAACATTTCCCTTCTCGGAAACCGGTTAACGGGCTCTCTCCCTATTGCGCTTGCAAACATCACCACACTGCAAACTCTGATTATCAACTTTAATAATTTCTCTGGAGGTCTTCCTGCAGAGCTTGGGAATCTACCAAGCATAGAGAGAATTCGTATTAGTGACAATTCCTTTTCTGGGAAAATACCTGATTTTATCCAGAACTGGACAAGCATTGAGAAATTAATTCAGGCAAGTGGTTTGACAGGGCCAATTCCTTCCGGCGTCTCTCTTCTGACAAGATTAACTGACCTGATGTTGAGGAGTTGCAATATTAGTGGACAACTGCCTCTGTATCTCGGGGACATGAAGATCTTGAAAACTTTAGACCTTAGCTTTAACAAGCTAACAGGACAGATCCCAAACAGCTTTGCTGGTCTGACAAATATTGATTACATGTTCTTAAGTGGAAATATGCTGAATGGATCTGTTCCTAATTGGCTGGAAGGAGATAACATTGATCTTTCATATAACAACTTCACCATTAACTCGAGACACATGAGTTGTGAACCACGAGTCGGCTTGAACTTGTTCGCAAGCTCTTCAGGGGAAAATAGTTCATCTGTTGCATGTTTGAGCACAGAGGATTGTCAAGAAACTTATTCCTCTCTCCATATAAACTGTGGTGGAGGTCGAGTATTAGTGGATGGAGCAACATTTGATGACGATAGAAGTCCACATGGAGCATCATCATCTCACACAAGTACAAATTGGGCATTCAGTAGCACCGGCTACTTCCCTGATGACGACAAGTCTAGGGATTATTTTACTTGGTCCAACACATCTCAGCTTTCTATGGAGGATCCTCAGCTCTACATGACTGCACGGCTTAGTGCCATCTCCCTGACATATTATGGTTTCTGCCTAGTGAATGGGAGCTACAGTGTGAGTCTTCATTTTTCAGAGGTTATATTTTCTGATGACCACACATACAGCAGTTTGGGGAGGCGCATATTTGATGTTTACATCCAGGGTATGCTAGTATTGAAAGATTTTGACATTATGAAGGAAGCAGGTGGGGCCGACTTTGTAGACTCGCACAAACACAAACCAAGAGGTGGAATCTCTGTAGGTGTAGTAGTTGGGATGGTGGTTGGATTCGTGTTAGTTGTCTCACTGATTTTAAGGGTGTTGATCGACCTGCAAACAAGAAAATTCACCTGGAAGCAAATCAGAGATGCCACCAACAACTTTGATATAGCCAACAAAATTGGTGAAGGTGGTTTTGGTGCTGTTTACAAGGGCCTTCTATCAAATGGCACCTCAGTTGCTATTAAGCAGCTTTCTACCCAGTCGAAGCAAGGGAATCGGGAGTTTCTCAACGAAATAGGCATAATTTCTGCTCTGCGACACCGTAATCTTGTTGAGCTTTTTGGCTGCTGTGTTGAGGGCGATCAATTGTTACTAGTGTACGAGTACATGGAAAAGAATAGTCTTGCACGTGCTTTGTTTGGCCCGGAAGAGAGTCGGTTGGATTTGGATTGGCCTACCAGACAGAAGATTTGTCTTGGTATAGCGAGAGGTTTGGCGTACCTCCATGAGGAATCAAGGATGAAGATAATCCACAGAGATATCAAGGCTACAAATGTGCTTCTTGGTGAAGACTTCCTTCCCAAAATATCAGATTTTGGGTTGGCAAAGCTTGATGAAGGAGATAAGACTCACATGTCTACAGAGACCAGTGGAACTTATGGGTATATGGCCCCAGAATATGCACTGCGTGGCCATCTCTCTGACAAAGCTGATGTATATAGTTTCGGGATTGTTGTGCTCGAAATTGTCAGTGGACGGAGCAGGAACAGCAACCCGACAAATGAAGAAGGTGTTTATCTCGTTGATTGGGCACATCGTCTTCGGGAAGAACAGAAATTGTTGGACGTAGTGGATGCGAGGTTGGGGGGAGAATTTGATAATGTTGAGATGATCACCACGATCAAAGTGGCTCTCGTTTGCTCGCACGAGATTGCAGCCAATAGGCCTAGCATGTCTTTAGTAGTGAACATGCTTGTGGGCGACGCACTAGTTCCTGAATTCGTTTCCACTACATCAAATAATGAGGGCAACCCTTGGTTTGAGAGAAGTTTCCAGGCCCTTGTTCCAGGAGACGTGGACAGCTCCATATCGAAAGACAGTAATGAGATCACTATAGAAGATGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

934

Amino Acids

102.5

Weight (kDa)

5.26

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	295 - 354	4e-09	Leucine rich repeat
Malectin	PF11721	417 - 556	7.8e-29	Malectin domain
PK_Tyr_Ser-Thr	PF07714	614 - 838	5.5e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	614 - 818	1.5e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08320 AT1G08320 AT1G08320 AT1G08320 AT1G08320
fragaria_vesca	FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830
malus_domestica	MD03G1143600.v1.1 MD11G1164300.v1.1
prunus_persica	Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1
pyrus_communis	pycom03g09870 pycom11g13570
rosa_chinensis	RchiOBHm_Chr5g0044421
rosa_laevigata	RLG00000034273
rosa_multiflora	Rmu_sc0007129.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036540
rosa_rugosa	Rorug05G0213900 Rorug05G0214000
rosa_samantha	Rh5AG298400 Rh5BG305700 Rh5CG332700 Rh5DG314900
rosa_wichuraiana	Rw5G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1646
AasI	GACNNNNNNGTC	1 cut(s)	2308
AatII	GACGTC	1 cut(s)	257
Acc36I	ACCTGC	2 cut(s)	1646, 1791
AccB1I	GGYRCC	1 cut(s)	1901
AccB7I	CCANNNNNTGG	1 cut(s)	1700
AccI	GTMKAC	2 cut(s)	1674, 2312
AccII	CGCG	2 cut(s)	219, 233
AciI	CCGC	5 cut(s)	217, 231, 233, 506, 553
AclWI	GGATC	5 cut(s)	389, 994, 1075, 1439, 1452
AcoI	YGGCCR	2 cut(s)	234, 2365
AcsI	RAATTY	7 cut(s)	49, 382, 487, 753, 1796, 2546, 2672
AcuI	CTGAAG	2 cut(s)	87, 1170
AcvI	CACGTG	1 cut(s)	2084
AcyI	GRCGYC	2 cut(s)	254, 867
AdeI	CACNNNGTG	1 cut(s)	2363
AfaI	GTAC	6 cut(s)	391, 571, 1348, 2054, 2060, 2174
AfiI	CCNNNNNNNGG	7 cut(s)	404, 587, 634, 780, 1160, 1700, 2182
AflII	CTTAAG	1 cut(s)	1045
AflIII	ACRYGT	2 cut(s)	1038, 2307
AgeI	ACCGGT	1 cut(s)	627
AgsI	TTSAA	5 cut(s)	62, 478, 961, 1168, 1630
AhdI	GACNNNNNGTC	2 cut(s)	279, 1393
AhlI	ACTAGT	2 cut(s)	2047, 2662
AjiI	CACGTC	1 cut(s)	2749
AjnI	CCWGG	5 cut(s)	424, 1611, 1802, 2727, 2740
AjuI	GAANNNNNNNTTGG	2 cut(s)	1851, 1883
Alw21I	GWGCWC	3 cut(s)	263, 1223, 2415
Alw26I	GTCTC	5 cut(s)	874, 1129, 1759, 2312, 2739
Alw44I	GTGCAC	1 cut(s)	259
AlwI	GGATC	5 cut(s)	389, 994, 1075, 1439, 1452
AlwNI	CAGNNNCTG	1 cut(s)	453
Ama87I	CYCGRG	2 cut(s)	941, 1132
ApaLI	GTGCAC	1 cut(s)	259
ApeKI	GCWGC	7 cut(s)	23, 26, 74, 221, 1921, 2019, 2609
ApoI	RAATTY	7 cut(s)	49, 382, 487, 753, 1796, 2546, 2672
ArsI	GACNNNNNNTTYG	2 cut(s)	2127, 2159
AseI	ATTAAT	1 cut(s)	827
AsiGI	ACCGGT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	1172
AspLEI	GCGC	3 cut(s)	221, 655, 1593
AspS9I	GGNCC	8 cut(s)	281, 851, 1416, 1662, 1885, 2096, 2344, 2731
AsuC2I	CCSGG	1 cut(s)	2099
AsuHPI	GGTGA	9 cut(s)	23, 322, 425, 658, 1114, 1792, 1868, 2252, 2560
AsuNHI	GCTAGC	1 cut(s)	241
AvaI	CYCGRG	2 cut(s)	941, 1132
AvaII	GGWCC	2 cut(s)	281, 1416
BaeGI	GKGCMC	2 cut(s)	263, 2488
BalI	TGGCCA	1 cut(s)	2367
BamHI	GGATCC	1 cut(s)	1444
BanI	GGYRCC	1 cut(s)	1901
BanII	GRGCYC	2 cut(s)	593, 641
BauI	CACGAG	2 cut(s)	1155, 2600
BbrPI	CACGTG	1 cut(s)	2084
BbsI	GAAGAC	4 cut(s)	707, 1526, 2250, 2486
Bbv12I	GWGCWC	3 cut(s)	263, 1223, 2415
BbvCI	CCTCAGC	2 cut(s)	548, 1449
BbvI	GCAGC	7 cut(s)	10, 13, 61, 208, 1933, 2006, 2621
BccI	CCATC	7 cut(s)	272, 311, 410, 1283, 1487, 1723, 2376
BceAI	ACGGC	1 cut(s)	1484
BcgI	CGANNNNNNTGC	2 cut(s)	1931, 1965
BciT130I	CCWGG	5 cut(s)	426, 1613, 1804, 2729, 2742
BclI	TGATCA	2 cut(s)	516, 2565
BcnI	CCSGG	1 cut(s)	2099
BcoDI	GTCTC	5 cut(s)	874, 1129, 1759, 2312, 2739
BcuI	ACTAGT	2 cut(s)	2047, 2662
BfmI	CTRYAG	5 cut(s)	720, 1522, 1710, 2313, 2787
BfrI	CTTAAG	1 cut(s)	1045
BfuAI	ACCTGC	2 cut(s)	1646, 1791
BglII	AGATCT	1 cut(s)	954
Bme1390I	CCNGG	6 cut(s)	426, 1613, 1804, 2099, 2729, 2742
Bme18I	GGWCC	2 cut(s)	281, 1416
BmeRI	GACNNNNNGTC	2 cut(s)	279, 1393
BmeT110I	CYCGRG	2 cut(s)	941, 1132
BmgBI	CACGTC	1 cut(s)	2749
BmgT120I	GGNCC	8 cut(s)	281, 851, 1416, 1662, 1885, 2096, 2344, 2731
BmiI	GGNNCC	6 cut(s)	524, 592, 1446, 1663, 1903, 2346
BmrFI	CCNGG	6 cut(s)	426, 1613, 1804, 2099, 2729, 2742
BmrI	ACTGGG	2 cut(s)	344, 1927
BmsI	GCATC	4 cut(s)	217, 1337, 1810, 2518
BmtI	GCTAGC	1 cut(s)	245
BmuI	ACTGGG	2 cut(s)	344, 1927
BpiI	GAAGAC	4 cut(s)	707, 1526, 2250, 2486
BpmI	CTGGAG	2 cut(s)	564, 729
Bpu10I	CCTNAGC	3 cut(s)	548, 974, 1449
BpuEI	CTTGAG	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	2099
Bsa29I	ATCGAT	1 cut(s)	300
BsaAI	YACGTR	2 cut(s)	460, 2084
BsaHI	GRCGYC	2 cut(s)	254, 867
BsaI	GGTCTC	1 cut(s)	2312
BsaJI	CCNNGG	3 cut(s)	231, 1612, 2708
BsaWI	WCCGGW	1 cut(s)	627
BsaXI	ACNNNNNCTCC	6 cut(s)	562, 592, 1263, 1293, 1510, 1540
Bsc4I	CCNNNNNNNGG	7 cut(s)	404, 587, 634, 780, 1160, 1700, 2182
Bse118I	RCCGGY	2 cut(s)	627, 1370
Bse1I	ACTGG	5 cut(s)	339, 447, 812, 1933, 2322
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	5 cut(s)	426, 1613, 1804, 2729, 2742
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	231, 1612, 2708
BseGI	GGATG	5 cut(s)	1294, 1608, 1734, 2199, 2533
BseLI	CCNNNNNNNGG	7 cut(s)	404, 587, 634, 780, 1160, 1700, 2182
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	4 cut(s)	562, 1442, 1463, 1920
BseNI	ACTGG	5 cut(s)	339, 447, 812, 1933, 2322
BseRI	GAGGAG	2 cut(s)	423, 919
BseSI	GKGCMC	2 cut(s)	263, 2488
BseXI	GCAGC	7 cut(s)	10, 13, 61, 208, 1933, 2006, 2621
BsgI	GTGCAG	1 cut(s)	1449
Bsh1236I	CGCG	2 cut(s)	219, 233
Bsh1285I	CGRYCG	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	1901
BshTI	ACCGGT	1 cut(s)	627
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	3 cut(s)	263, 1223, 2415
BsiHKCI	CYCGRG	2 cut(s)	941, 1132
BsiSI	CCGG	4 cut(s)	628, 864, 1371, 2099
BslFI	GGGAC	1 cut(s)	959
BslI	CCNNNNNNNGG	7 cut(s)	404, 587, 634, 780, 1160, 1700, 2182
BsmAI	GTCTC	5 cut(s)	874, 1129, 1759, 2312, 2739
BsmBI	CGTCTC	2 cut(s)	874, 2739
BsmFI	GGGAC	1 cut(s)	959
BsmI	GAATGC	1 cut(s)	1358
Bso31I	GGTCTC	1 cut(s)	2312
BsoBI	CYCGRG	2 cut(s)	941, 1132
Bsp1286I	GDGCHC	6 cut(s)	263, 593, 641, 1223, 2415, 2488
BspACI	CCGC	5 cut(s)	217, 231, 233, 506, 553
BspCNI	CTCAG	4 cut(s)	561, 1441, 1462, 1919
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	2 cut(s)	219, 233
BspLI	GGNNCC	6 cut(s)	524, 592, 1446, 1663, 1903, 2346
BspMAI	CTGCAG	1 cut(s)	724
BspMI	ACCTGC	2 cut(s)	1646, 1791
BspOI	GCTAGC	1 cut(s)	245
BspPI	GGATC	5 cut(s)	389, 994, 1075, 1439, 1452
BspQI	GCTCTTC	1 cut(s)	1189
BspT107I	GGYRCC	1 cut(s)	1901
BspTI	CTTAAG	1 cut(s)	1045
BspTNI	GGTCTC	1 cut(s)	2312
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	2 cut(s)	627, 1370
BsrI	ACTGG	5 cut(s)	339, 447, 812, 1933, 2322
BssAI	RCCGGY	2 cut(s)	627, 1370
BssECI	CCNNGG	3 cut(s)	231, 1612, 2708
BssNI	GRCGYC	2 cut(s)	254, 867
BssSI	CACGAG	2 cut(s)	1155, 2600
BssT1I	CCWWGG	1 cut(s)	2708
Bst2BI	CACGAG	2 cut(s)	1155, 2600
Bst2UI	CCWGG	5 cut(s)	426, 1613, 1804, 2729, 2742
Bst4CI	ACNGT	5 cut(s)	443, 1265, 1526, 1997, 2774
Bst6I	CTCTTC	3 cut(s)	879, 1189, 2097
BstACI	GRCGYC	2 cut(s)	254, 867
BstAFI	CTTAAG	1 cut(s)	1045
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstBAI	YACGTR	2 cut(s)	460, 2084
BstC8I	GCNNGC	4 cut(s)	243, 657, 1180, 2597
BstDEI	CTNAG	6 cut(s)	548, 974, 1428, 1449, 1472, 1906
BstDSI	CCRYGG	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	2180
BstF5I	GGATG	5 cut(s)	1294, 1608, 1734, 2199, 2533
BstFNI	CGCG	2 cut(s)	219, 233
BstHHI	GCGC	3 cut(s)	221, 655, 1593
BstMAI	GTCTC	5 cut(s)	874, 1129, 1759, 2312, 2739
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 218, 227, 230, 242, 327, 1661, 2442
BstNI	CCWGG	5 cut(s)	426, 1613, 1804, 2729, 2742
BstNSI	RCATGY	5 cut(s)	1042, 1215, 2311, 2629, 2647
BstSCI	CCNGG	6 cut(s)	424, 1611, 1802, 2097, 2727, 2740
BstSFI	CTRYAG	5 cut(s)	720, 1522, 1710, 2313, 2787
BstSLI	GKGCMC	2 cut(s)	263, 2488
BstUI	CGCG	2 cut(s)	219, 233
BstV1I	GCAGC	7 cut(s)	10, 13, 61, 208, 1933, 2006, 2621
BstV2I	GAAGAC	4 cut(s)	707, 1526, 2250, 2486
BstX2I	RGATCY	4 cut(s)	954, 999, 1067, 1444
BstYI	RGATCY	4 cut(s)	954, 999, 1067, 1444
Bsu15I	ATCGAT	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	2749
BtsCI	GGATG	5 cut(s)	1294, 1608, 1734, 2199, 2533
BtsI	GCAGTG	2 cut(s)	671, 2357
BtsIMutI	CAGTG	7 cut(s)	332, 671, 1531, 1757, 2329, 2357, 2431
BveI	ACCTGC	2 cut(s)	1646, 1791
Cac8I	GCNNGC	4 cut(s)	243, 657, 1180, 2597
CaiI	CAGNNNCTG	1 cut(s)	453
CfoI	GCGC	3 cut(s)	221, 655, 1593
Cfr10I	RCCGGY	2 cut(s)	627, 1370
Cfr13I	GGNCC	8 cut(s)	281, 851, 1416, 1662, 1885, 2096, 2344, 2731
Cfr42I	CCGCGG	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	2 cut(s)	856, 2666
Csp6I	GTAC	6 cut(s)	390, 570, 1347, 2053, 2059, 2173
CspAI	ACCGGT	1 cut(s)	627
CspCI	CAANNNNNGTGG	2 cut(s)	901, 936
CviQI	GTAC	6 cut(s)	390, 570, 1347, 2053, 2059, 2173
DdeI	CTNAG	6 cut(s)	548, 974, 1428, 1449, 1472, 1906
DraIII	CACNNNGTG	1 cut(s)	2363
DrdI	GACNNNNNNGTC	1 cut(s)	2308
DriI	GACNNNNNGTC	2 cut(s)	279, 1393
DseDI	GACNNNNNNGTC	1 cut(s)	2308
EaeI	YGGCCR	2 cut(s)	234, 2365
Eam1104I	CTCTTC	3 cut(s)	879, 1189, 2097
Eam1105I	GACNNNNNGTC	2 cut(s)	279, 1393
EarI	CTCTTC	3 cut(s)	879, 1189, 2097
Eco130I	CCWWGG	1 cut(s)	2708
Eco147I	AGGCCT	1 cut(s)	2620
Eco24I	GRGCYC	2 cut(s)	593, 641
Eco31I	GGTCTC	1 cut(s)	2312
Eco32I	GATATC	1 cut(s)	2215
Eco47I	GGWCC	2 cut(s)	281, 1416
Eco57I	CTGAAG	2 cut(s)	87, 1170
Eco72I	CACGTG	1 cut(s)	2084
Eco88I	CYCGRG	2 cut(s)	941, 1132
EcoNI	CCTNNNNNAGG	1 cut(s)	2180
EcoO109I	RGGNCCY	2 cut(s)	1885, 2731
EcoRI	GAATTC	2 cut(s)	753, 2672
EcoRII	CCWGG	5 cut(s)	424, 1611, 1802, 2727, 2740
EcoRV	GATATC	1 cut(s)	2215
EcoT14I	CCWWGG	1 cut(s)	2708
EcoT38I	GRGCYC	2 cut(s)	593, 641
ErhI	CCWWGG	1 cut(s)	2708
Esp3I	CGTCTC	2 cut(s)	874, 2739
FalI	AAGNNNNNCTT	2 cut(s)	2235, 2267
FaqI	GGGAC	1 cut(s)	959
FbaI	TGATCA	2 cut(s)	516, 2565
FblI	GTMKAC	2 cut(s)	1674, 2312
FokI	GGATG	5 cut(s)	1301, 1595, 1741, 2206, 2540
FriOI	GRGCYC	2 cut(s)	593, 641
GlaI	GCGC	3 cut(s)	220, 654, 1592
GsuI	CTGGAG	2 cut(s)	564, 729
HapII	CCGG	4 cut(s)	628, 864, 1371, 2099
HgaI	GACGC	2 cut(s)	856, 2666
HhaI	GCGC	3 cut(s)	221, 655, 1593
Hin1I	GRCGYC	2 cut(s)	254, 867
Hin6I	GCGC	3 cut(s)	219, 653, 1591
HinP1I	GCGC	3 cut(s)	219, 653, 1591
HincII	GTYRAC	2 cut(s)	607, 633
HindII	GTYRAC	2 cut(s)	607, 633
HindIII	AAGCTT	2 cut(s)	181, 2282
HpaI	GTTAAC	2 cut(s)	607, 633
HpaII	CCGG	4 cut(s)	628, 864, 1371, 2099
HphI	GGTGA	9 cut(s)	23, 322, 425, 658, 1114, 1792, 1868, 2252, 2560
Hpy188I	TCNGA	9 cut(s)	623, 684, 879, 1023, 1546, 1561, 1817, 2266, 2377
Hpy99I	CGWCG	2 cut(s)	259, 2660
HpyCH4III	ACNGT	5 cut(s)	443, 1265, 1526, 1997, 2774
HpyCH4IV	ACGT	5 cut(s)	254, 459, 2083, 2520, 2748
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 218, 227, 230, 242, 327, 1661, 2442
HpyF3I	CTNAG	6 cut(s)	548, 974, 1428, 1449, 1472, 1906
HpySE526I	ACGT	5 cut(s)	254, 459, 2083, 2520, 2748
Hsp92I	GRCGYC	2 cut(s)	254, 867
HspAI	GCGC	3 cut(s)	219, 653, 1591
Ksp22I	TGATCA	2 cut(s)	516, 2565
KspAI	GTTAAC	2 cut(s)	607, 633
KspI	CCGCGG	1 cut(s)	234
LguI	GCTCTTC	1 cut(s)	1189
LmnI	GCTCC	8 cut(s)	338, 528, 596, 1292, 1325, 1518, 2433, 2762
Lsp1109I	GCAGC	7 cut(s)	10, 13, 61, 208, 1933, 2006, 2621
LweI	GCATC	4 cut(s)	217, 1337, 1810, 2518
MaeII	ACGT	5 cut(s)	254, 459, 2083, 2520, 2748
MaeIII	GTNAC	3 cut(s)	199, 764, 2043
MfeI	CAATTG	2 cut(s)	57, 2039
MflI	RGATCY	4 cut(s)	954, 999, 1067, 1444
MhlI	GDGCHC	6 cut(s)	263, 593, 641, 1223, 2415, 2488
MlsI	TGGCCA	1 cut(s)	2367
MluNI	TGGCCA	1 cut(s)	2367
MlyI	GAGTC	6 cut(s)	355, 1167, 1540, 1670, 2116, 2296
MmeI	TCCRAC	5 cut(s)	311, 1443, 1717, 2094, 2496
Mox20I	TGGCCA	1 cut(s)	2367
MroXI	GAANNNNTTC	1 cut(s)	1172
MscI	TGGCCA	1 cut(s)	2367
MslI	CAYNNNNRTG	1 cut(s)	2648
Msp20I	TGGCCA	1 cut(s)	2367
MspA1I	CMGCKG	1 cut(s)	233
MspCI	CTTAAG	1 cut(s)	1045
MspI	CCGG	4 cut(s)	628, 864, 1371, 2099
MspR9I	CCNGG	6 cut(s)	426, 1613, 1804, 2099, 2729, 2742
MunI	CAATTG	2 cut(s)	57, 2039
Mva1269I	GAATGC	1 cut(s)	1358
MvaI	CCWGG	5 cut(s)	426, 1613, 1804, 2729, 2742
MvnI	CGCG	2 cut(s)	219, 233
MwoI	GCNNNNNNNGC	8 cut(s)	53, 218, 227, 230, 242, 327, 1661, 2442
NciI	CCSGG	1 cut(s)	2099
NheI	GCTAGC	1 cut(s)	241
NlaIV	GGNNCC	6 cut(s)	524, 592, 1446, 1663, 1903, 2346
NmuCI	GTSAC	1 cut(s)	764
NspI	RCATGY	5 cut(s)	1042, 1215, 2311, 2629, 2647
PaeR7I	CTCGAG	1 cut(s)	1132
PaqCI	CACCTGC	1 cut(s)	1646
PceI	AGGCCT	1 cut(s)	2620
PciI	ACATGT	2 cut(s)	1038, 2307
PciSI	GCTCTTC	1 cut(s)	1189
PctI	GAATGC	1 cut(s)	1358
PdmI	GAANNNNTTC	1 cut(s)	1172
PfeI	GAWTC	6 cut(s)	132, 733, 1704, 1740, 1948, 2186
PflMI	CCANNNNNTGG	1 cut(s)	1700
PfoI	TCCNGGA	1 cut(s)	2740
PinAI	ACCGGT	1 cut(s)	627
PleI	GAGTC	6 cut(s)	355, 1166, 1539, 1670, 2115, 2296
PmaCI	CACGTG	1 cut(s)	2084
PmlI	CACGTG	1 cut(s)	2084
PpsI	GAGTC	6 cut(s)	355, 1166, 1539, 1670, 2115, 2296
Ppu21I	YACGTR	2 cut(s)	460, 2084
PscI	ACATGT	2 cut(s)	1038, 2307
PshBI	ATTAAT	1 cut(s)	827
Psp6I	CCWGG	5 cut(s)	424, 1611, 1802, 2727, 2740
PspCI	CACGTG	1 cut(s)	2084
PspGI	CCWGG	5 cut(s)	424, 1611, 1802, 2727, 2740
PspN4I	GGNNCC	6 cut(s)	524, 592, 1446, 1663, 1903, 2346
PspPI	GGNCC	8 cut(s)	281, 851, 1416, 1662, 1885, 2096, 2344, 2731
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	453
PsuI	RGATCY	4 cut(s)	954, 999, 1067, 1444
RsaI	GTAC	6 cut(s)	391, 571, 1348, 2054, 2060, 2174
RsaNI	GTAC	6 cut(s)	390, 570, 1347, 2053, 2059, 2173
RseI	CAYNNNNRTG	1 cut(s)	2648
SacII	CCGCGG	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	1189
Sau96I	GGNCC	8 cut(s)	281, 851, 1416, 1662, 1885, 2096, 2344, 2731
SchI	GAGTC	6 cut(s)	355, 1167, 1540, 1670, 2116, 2296
ScrFI	CCNGG	6 cut(s)	426, 1613, 1804, 2099, 2729, 2742
SduI	GDGCHC	6 cut(s)	263, 593, 641, 1223, 2415, 2488
SfaNI	GCATC	4 cut(s)	217, 1337, 1810, 2518
SfcI	CTRYAG	5 cut(s)	720, 1522, 1710, 2313, 2787
Sfr274I	CTCGAG	1 cut(s)	1132
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	281, 1416
SlaI	CTCGAG	1 cut(s)	1132
SmiMI	CAYNNNNRTG	1 cut(s)	2648
SmlI	CTYRAG	3 cut(s)	264, 1045, 1132
SmoI	CTYRAG	3 cut(s)	264, 1045, 1132
SpeI	ACTAGT	2 cut(s)	2047, 2662
SseBI	AGGCCT	1 cut(s)	2620
SsiI	CCGC	5 cut(s)	217, 231, 233, 506, 553
SspI	AATATT	2 cut(s)	916, 1030
StuI	AGGCCT	1 cut(s)	2620
StyD4I	CCNGG	6 cut(s)	424, 1611, 1802, 2097, 2727, 2740
StyI	CCWWGG	1 cut(s)	2708
TaaI	ACNGT	5 cut(s)	443, 1265, 1526, 1997, 2774
TaiI	ACGT	5 cut(s)	257, 462, 2086, 2523, 2751
TaqI	TCGA	8 cut(s)	272, 300, 1133, 1276, 1779, 1937, 2415, 2765
TaqII	GACCGA	2 cut(s)	290, 389
TatI	WGTACW	2 cut(s)	1346, 2058
TauI	GCSGC	3 cut(s)	233, 236, 555
TfiI	GAWTC	6 cut(s)	132, 733, 1704, 1740, 1948, 2186
TscAI	CASTG	7 cut(s)	339, 678, 1531, 1764, 2329, 2364, 2431
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	7 cut(s)	23, 26, 74, 221, 1921, 2019, 2609
Tsp45I	GTSAC	1 cut(s)	764
TspGWI	ACGGA	1 cut(s)	2446
TspRI	CASTG	7 cut(s)	339, 678, 1531, 1764, 2329, 2364, 2431
Van91I	CCANNNNNTGG	1 cut(s)	1700
Vha464I	CTTAAG	1 cut(s)	1045
VneI	GTGCAC	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	281, 1416
VspI	ATTAAT	1 cut(s)	827
XagI	CCTNNNNNAGG	1 cut(s)	2180
XapI	RAATTY	7 cut(s)	49, 382, 487, 753, 1796, 2546, 2672
XceI	RCATGY	5 cut(s)	1042, 1215, 2311, 2629, 2647
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1262, 2578
XhoI	CTCGAG	1 cut(s)	1132
XmiI	GTMKAC	2 cut(s)	1674, 2312
XmnI	GAANNNNTTC	1 cut(s)	1172
ZraI	GACGTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.