FvH4_3g24830
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
17919321 .. 17926576
7256 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24830.t6

Sequence Viewer

Length: 1548 bp
ATGGCGGCGAGTCACAGAGTTGTTGGAGATACAGGTCTTTCAGACTCGGGTCCTTCTTCTTCGAATCACCATGTTCCTTATGCTACTGTTCTTCATGGAATTAATGCTCCTTCCACAAGTTTCCTAAATCAAGAAGGATCTACTTTTGATTTTGGAGAGCTAGAAGAAGCAATTGCTCGTCAAGTTAGAAATGAAGAAGCTCAAGCACCTTTATTCACAGGAAGACCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATGAGATACCACCAAACCCCAAGAGGGAGTTCAAAGTCAGCAGGAGGGGAGAGCACAGACTCAGGATCACAGGTGAACACCACCACTCTTACAAGCAAAGGAGATCAGACCCAGGTGGAGCCAGAATCCCCCATAAGTAAATTAGCATCTTCTTCAAACCATCATCATCATCAGCACCAGGCTTTGGATCAGAATCATCTACAGTTCCAGCAGCAGCTACAGCAAGACATGGCAATTAGTGACACCACAAGAGCTACTACAGTAGCAACAGGAGCAGCAGAAGCATCAAAAGGCCAGTCAGCTCCAAAACCAAATCATGAAAAGAGGAAGGGAGCTGGTTCTACCTCAGAGAACAGACAGCTTGATGCTAAGACTCTGAGGCGCTTAGCTCAAAATCGAGAAGCTGCGAGAAAGAGCCGCCTGAGGAAAAAGGCTTATGTGCAACAGCTAGAATCAAGTAGGATCAAGCTCACACAGCTTGAACAAGATCTTCAAAGAGCTCGTGCTCAGGGATTGTTGATGGGTGGCTGTGGCGGTGGATTTGGCAATATCAGCTCAGCTGCTGCAATATTTGATATGGAATATGCAAGATGGCTAGAAGACGACCACCGTCACATGTCGGAGTTGCGAACCGGACTGCAGGCACATTTGTCGGACAACGATCTCCGAATCGTTGTGGATGGCTACATTTCTCATTATGATGAGATTTTCCAGCTCAAAGGAGTGGCTGCTAAGTCTGATGTGTTCCATCTCATAACTGGGTTGTGGGCGTCTCAAGCTGAGCGTTGCTTCCTCTGGATGGGTGGCTTTAGACCTTCTGACCTCATCAAGATGTTGACACAACAGTTAGACCCAATAACTGAACAGCAAGTGATGGGGATATGCAGCCTCCAACATTCATCACAACAGGCTGAAGAGGCTCTCACCCAAGGCCTAGACCAGCTTCATCAGTCTCTCATCGACACCATCGCCGGTGGACCAGTCATAGACGGCATGCAACAGATGGCCGTGGCTCTGGGCAAGCTCACTAATCTTGATGGCTTTGTTCGACAGGCTGATAATTTGAGACAGCAAACCCTTCACCAGCTGCGCCGGATATTGACAGTTCGCCAAGCAGCGCGGTGCTTTCTGGTAATCGGCGAGTACTATGGAAGATTGAGAGCACTTAGTTCTCTTTGGGCATCAAGACCACGAGAGAGCATGATGAGTGACGATAACTCGTGCCAAACAACGACGGACTTGCAAATGGTTCATCAGCCTTCTCAAAATCACTTCTCATCCTTCTGA

Protein Analysis

516

Amino Acids

56.88

Weight (kDa)

6.62

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 32 - 107 8.6e-30 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccB7I CCANNNNNTGG 1 cut(s) 445
AccII CGCG 1 cut(s) 1381
AciI CCGC 4 cut(s) 5, 679, 795, 1381
AclWI GGATC 4 cut(s) 145, 334, 456, 731
AcoI YGGCCR 2 cut(s) 257, 1266
AcuI CTGAAG 1 cut(s) 1194
AcyI GRCGYC 1 cut(s) 1031
AfaI GTAC 1 cut(s) 1406
AfiI CCNNNNNNNGG 3 cut(s) 285, 445, 1060
AflIII ACRYGT 1 cut(s) 876
AgsI TTSAA 4 cut(s) 294, 417, 743, 755
AjnI CCWGG 2 cut(s) 372, 438
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
Alw21I GWGCWC 4 cut(s) 317, 763, 769, 1426
Alw26I GTCTC 3 cut(s) 1038, 1218, 1321
AlwI GGATC 4 cut(s) 145, 334, 456, 731
AlwNI CAGNNNCTG 1 cut(s) 824
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 4 cut(s) 257, 553, 1192, 1266
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AseI ATTAAT 1 cut(s) 102
AspLEI GCGC 3 cut(s) 645, 1353, 1381
AspS9I GGNCC 2 cut(s) 50, 1238
AsuHPI GGTGA 4 cut(s) 59, 346, 1177, 1334
AsuII TTCGAA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 46
AvaII GGWCC 2 cut(s) 50, 1238
AxyI CCTNAGG 1 cut(s) 683
BalI TGGCCA 1 cut(s) 259
BanII GRGCYC 1 cut(s) 763
BauI CACGAG 3 cut(s) 762, 1452, 1480
BbsI GAAGAC 2 cut(s) 229, 867
Bbv12I GWGCWC 4 cut(s) 317, 763, 769, 1426
BceAI ACGGC 2 cut(s) 1253, 1267
BcgI CGANNNNNNTGC 4 cut(s) 894, 928, 1483, 1517
BciT130I CCWGG 2 cut(s) 374, 440
BcoDI GTCTC 3 cut(s) 1038, 1218, 1321
BfaI CTAG 4 cut(s) 161, 710, 857, 1196
BfmI CTRYAG 5 cut(s) 228, 461, 479, 519, 899
BfoI RGCGCY 1 cut(s) 646
BfuAI ACCTGC 1 cut(s) 235
BglII AGATCT 1 cut(s) 748
BlpI GCTNAGC 3 cut(s) 646, 817, 1041
BmcAI AGTACT 1 cut(s) 1406
Bme1390I CCNGG 2 cut(s) 374, 440
Bme18I GGWCC 2 cut(s) 50, 1238
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 50, 1238
BmiI GGNNCC 2 cut(s) 51, 381
BmrFI CCNGG 2 cut(s) 374, 440
BmrI ACTGGG 1 cut(s) 1029
BmsI GCATC 4 cut(s) 416, 554, 616, 1451
BmuI ACTGGG 1 cut(s) 1029
BoxI GACNNNNGTC 2 cut(s) 48, 870
BpiI GAAGAC 2 cut(s) 229, 867
Bpu10I CCTNAGC 1 cut(s) 768
Bpu1102I GCTNAGC 3 cut(s) 646, 817, 1041
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 186, 1020
BsaBI GATNNNNATC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 1031
BsaJI CCNNGG 3 cut(s) 372, 1189, 1269
BsaWI WCCGGW 1 cut(s) 893
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 445, 1060
Bse118I RCCGGY 1 cut(s) 1232
Bse1I ACTGG 3 cut(s) 556, 1024, 1241
Bse21I CCTNAGG 1 cut(s) 683
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 2 cut(s) 374, 440
BseDI CCNNGG 3 cut(s) 372, 1189, 1269
BseGI GGATG 3 cut(s) 946, 1065, 1538
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 3 cut(s) 285, 445, 1060
BseMII CTCAG 7 cut(s) 336, 621, 629, 674, 782, 831, 1032
BseNI ACTGG 3 cut(s) 556, 1024, 1241
Bsh1236I CGCG 1 cut(s) 1381
BshFI GGCC 4 cut(s) 259, 555, 1194, 1268
BsiHKAI GWGCWC 4 cut(s) 317, 763, 769, 1426
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 3 cut(s) 894, 1233, 1354
BslI CCNNNNNNNGG 3 cut(s) 285, 445, 1060
BsmAI GTCTC 3 cut(s) 1038, 1218, 1321
BsmBI CGTCTC 1 cut(s) 1038
BsnI GGCC 4 cut(s) 259, 555, 1194, 1268
BsoBI CYCGRG 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 4 cut(s) 317, 763, 769, 1426
Bsp143I GATC 7 cut(s) 137, 326, 364, 448, 723, 748, 922
Bsp1720I GCTNAGC 3 cut(s) 646, 817, 1041
BspACI CCGC 4 cut(s) 5, 679, 795, 1381
BspANI GGCC 4 cut(s) 259, 555, 1194, 1268
BspCNI CTCAG 7 cut(s) 335, 620, 630, 675, 781, 830, 1033
BspFNI CGCG 1 cut(s) 1381
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 51, 381
BspMAI CTGCAG 2 cut(s) 232, 903
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 4 cut(s) 145, 334, 456, 731
BspT104I TTCGAA 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 1232
BsrI ACTGG 3 cut(s) 556, 1024, 1241
BssAI RCCGGY 1 cut(s) 1232
BssECI CCNNGG 3 cut(s) 372, 1189, 1269
BssMI GATC 7 cut(s) 137, 326, 364, 448, 723, 748, 922
BssNI GRCGYC 1 cut(s) 1031
BssSI CACGAG 3 cut(s) 762, 1452, 1480
BssT1I CCWWGG 1 cut(s) 1189
Bst2BI CACGAG 3 cut(s) 762, 1452, 1480
Bst2UI CCWGG 2 cut(s) 374, 440
Bst4CI ACNGT 6 cut(s) 88, 465, 523, 872, 1107, 1366
Bst6I CTCTTC 1 cut(s) 1170
BstACI GRCGYC 1 cut(s) 1031
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 903, 1256, 1283
BstDSI CCRYGG 1 cut(s) 1269
BstF5I GGATG 3 cut(s) 946, 1065, 1538
BstFNI CGCG 1 cut(s) 1381
BstH2I RGCGCY 1 cut(s) 646
BstHHI GCGC 3 cut(s) 645, 1353, 1381
BstKTI GATC 7 cut(s) 140, 329, 367, 451, 726, 751, 925
BstMAI GTCTC 3 cut(s) 1038, 1218, 1321
BstMBI GATC 7 cut(s) 137, 326, 364, 448, 723, 748, 922
BstMWI GCNNNNNNNGC 7 cut(s) 481, 533, 542, 736, 813, 1037, 1178
BstNI CCWGG 2 cut(s) 374, 440
BstNSI RCATGY 2 cut(s) 880, 1258
BstPAI GACNNNNGTC 2 cut(s) 48, 870
BstSCI CCNGG 2 cut(s) 372, 438
BstSFI CTRYAG 5 cut(s) 228, 461, 479, 519, 899
BstUI CGCG 1 cut(s) 1381
BstV2I GAAGAC 2 cut(s) 229, 867
BstX2I RGATCY 2 cut(s) 137, 748
BstYI RGATCY 2 cut(s) 137, 748
Bsu36I CCTNAGG 1 cut(s) 683
BsuRI GGCC 4 cut(s) 259, 555, 1194, 1268
BtgI CCRYGG 1 cut(s) 1269
BtgZI GCGATG 1 cut(s) 1213
BtsCI GGATG 3 cut(s) 946, 1065, 1538
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 3 cut(s) 903, 1256, 1283
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 1 cut(s) 577
CfoI GCGC 3 cut(s) 645, 1353, 1381
Cfr10I RCCGGY 1 cut(s) 1232
Cfr13I GGNCC 2 cut(s) 50, 1238
CseI GACGC 1 cut(s) 1020
Csp6I GTAC 1 cut(s) 1405
CviAII CATG 7 cut(s) 71, 95, 490, 578, 877, 1255, 1462
CviQI GTAC 1 cut(s) 1405
DpnI GATC 7 cut(s) 139, 328, 366, 450, 725, 750, 924
DpnII GATC 7 cut(s) 137, 326, 364, 448, 723, 748, 922
EaeI YGGCCR 2 cut(s) 257, 1266
Eam1104I CTCTTC 1 cut(s) 1170
EarI CTCTTC 1 cut(s) 1170
Ecl136II GAGCTC 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 1189
Eco147I AGGCCT 1 cut(s) 1194
Eco24I GRGCYC 1 cut(s) 763
Eco47I GGWCC 2 cut(s) 50, 1238
Eco53kI GAGCTC 1 cut(s) 761
Eco57I CTGAAG 1 cut(s) 1194
Eco81I CCTNAGG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 761
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 2 cut(s) 372, 438
EcoT14I CCWWGG 1 cut(s) 1189
EcoT38I GRGCYC 1 cut(s) 763
ErhI CCWWGG 1 cut(s) 1189
Esp3I CGTCTC 1 cut(s) 1038
FaeI CATG 7 cut(s) 74, 98, 493, 581, 880, 1258, 1465
FatI CATG 7 cut(s) 70, 94, 489, 577, 876, 1254, 1461
FokI GGATG 3 cut(s) 953, 1072, 1525
FriOI GRGCYC 1 cut(s) 763
FspBI CTAG 4 cut(s) 161, 710, 857, 1196
GlaI GCGC 3 cut(s) 644, 1352, 1380
HaeII RGCGCY 1 cut(s) 646
HaeIII GGCC 4 cut(s) 259, 555, 1194, 1268
HapII CCGG 3 cut(s) 894, 1233, 1354
HgaI GACGC 1 cut(s) 1020
HhaI GCGC 3 cut(s) 645, 1353, 1381
Hin1I GRCGYC 1 cut(s) 1031
Hin1II CATG 7 cut(s) 74, 98, 493, 581, 880, 1258, 1465
Hin6I GCGC 3 cut(s) 643, 1351, 1379
HinP1I GCGC 3 cut(s) 643, 1351, 1379
HincII GTYRAC 1 cut(s) 1098
HindII GTYRAC 1 cut(s) 1098
HinfI GANTC 9 cut(s) 10, 44, 64, 320, 386, 454, 634, 713, 930
HpaII CCGG 3 cut(s) 894, 1233, 1354
HphI GGTGA 4 cut(s) 59, 346, 1177, 1334
Hpy166II GTNNAC 3 cut(s) 337, 1098, 1238
Hpy188III TCNNGA 9 cut(s) 131, 239, 324, 578, 659, 1057, 1090, 1295, 1446
Hpy8I GTNNAC 3 cut(s) 337, 1098, 1238
Hpy99I CGWCG 1 cut(s) 1498
HpyAV CCTTC 8 cut(s) 63, 120, 128, 261, 583, 1086, 1349, 1530
HpyCH4III ACNGT 6 cut(s) 88, 465, 523, 872, 1107, 1366
HpyCH4V TGCA 8 cut(s) 230, 703, 827, 848, 901, 1146, 1258, 1504
HpyF10VI GCNNNNNNNGC 7 cut(s) 481, 533, 542, 736, 813, 1037, 1178
Hsp92I GRCGYC 1 cut(s) 1031
Hsp92II CATG 7 cut(s) 74, 98, 493, 581, 880, 1258, 1465
HspAI GCGC 3 cut(s) 643, 1351, 1379
Kzo9I GATC 7 cut(s) 137, 326, 364, 448, 723, 748, 922
LmnI GCTCC 5 cut(s) 112, 379, 533, 568, 593
LweI GCATC 4 cut(s) 416, 554, 616, 1451
MaeI CTAG 4 cut(s) 161, 710, 857, 1196
MaeIII GTNAC 4 cut(s) 11, 500, 872, 1469
MalI GATC 7 cut(s) 139, 328, 366, 450, 725, 750, 924
MboI GATC 7 cut(s) 137, 326, 364, 448, 723, 748, 922
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 2 cut(s) 137, 748
MhlI GDGCHC 4 cut(s) 317, 763, 769, 1426
MlsI TGGCCA 1 cut(s) 259
MluCI AATT 5 cut(s) 99, 171, 401, 495, 1321
MluNI TGGCCA 1 cut(s) 259
MlyI GAGTC 4 cut(s) 19, 38, 314, 628
MmeI TCCRAC 4 cut(s) 4, 861, 894, 1177
Mox20I TGGCCA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 259
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 2 cut(s) 960, 1091
Msp20I TGGCCA 1 cut(s) 259
MspA1I CMGCKG 2 cut(s) 821, 1348
MspI CCGG 3 cut(s) 894, 1233, 1354
MspR9I CCNGG 2 cut(s) 374, 440
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 2 cut(s) 374, 440
MvnI CGCG 1 cut(s) 1381
MwoI GCNNNNNNNGC 7 cut(s) 481, 533, 542, 736, 813, 1037, 1178
NdeII GATC 7 cut(s) 137, 326, 364, 448, 723, 748, 922
NlaIII CATG 7 cut(s) 74, 98, 493, 581, 880, 1258, 1465
NlaIV GGNNCC 2 cut(s) 51, 381
NmuCI GTSAC 4 cut(s) 11, 500, 872, 1469
NspI RCATGY 2 cut(s) 880, 1258
NspV TTCGAA 1 cut(s) 62
PaeI GCATGC 1 cut(s) 1258
PagI TCATGA 1 cut(s) 577
PceI AGGCCT 1 cut(s) 1194
PciI ACATGT 1 cut(s) 876
PfeI GAWTC 5 cut(s) 64, 386, 454, 713, 930
PflMI CCANNNNNTGG 1 cut(s) 445
PleI GAGTC 4 cut(s) 18, 38, 314, 628
PpsI GAGTC 4 cut(s) 18, 38, 314, 628
PpuMI RGGWCCY 1 cut(s) 50
PscI ACATGT 1 cut(s) 876
PshAI GACNNNNGTC 2 cut(s) 48, 870
PshBI ATTAAT 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 763
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 372, 438
PspGI CCWGG 2 cut(s) 372, 438
PspN4I GGNNCC 2 cut(s) 51, 381
PspPI GGNCC 2 cut(s) 50, 1238
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 2 cut(s) 232, 903
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 2 cut(s) 137, 748
PvuII CAGCTG 2 cut(s) 821, 1348
RsaI GTAC 1 cut(s) 1406
RsaNI GTAC 1 cut(s) 1405
RseI CAYNNNNRTG 2 cut(s) 960, 1091
SacI GAGCTC 1 cut(s) 763
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 7 cut(s) 137, 326, 364, 448, 723, 748, 922
Sau96I GGNCC 2 cut(s) 50, 1238
ScaI AGTACT 1 cut(s) 1406
SchI GAGTC 4 cut(s) 19, 38, 314, 628
ScrFI CCNGG 2 cut(s) 374, 440
SduI GDGCHC 4 cut(s) 317, 763, 769, 1426
SfaNI GCATC 4 cut(s) 416, 554, 616, 1451
SfcI CTRYAG 5 cut(s) 228, 461, 479, 519, 899
SfuI TTCGAA 1 cut(s) 62
SgrAI CRCCGGYG 1 cut(s) 1232
SinI GGWCC 2 cut(s) 50, 1238
SmiMI CAYNNNNRTG 2 cut(s) 960, 1091
SmlI CTYRAG 2 cut(s) 201, 1035
SmoI CTYRAG 2 cut(s) 201, 1035
SphI GCATGC 1 cut(s) 1258
Sse9I AATT 5 cut(s) 99, 171, 401, 495, 1321
SseBI AGGCCT 1 cut(s) 1194
SsiI CCGC 4 cut(s) 5, 679, 795, 1381
SspI AATATT 1 cut(s) 831
SspMI CTAG 4 cut(s) 161, 710, 857, 1196
SstI GAGCTC 1 cut(s) 763
StuI AGGCCT 1 cut(s) 1194
StyD4I CCNGG 2 cut(s) 372, 438
StyI CCWWGG 1 cut(s) 1189
TaaI ACNGT 6 cut(s) 88, 465, 523, 872, 1107, 1366
TaqI TCGA 4 cut(s) 62, 658, 1221, 1309
TasI AATT 5 cut(s) 99, 171, 401, 495, 1321
TatI WGTACW 1 cut(s) 1404
TauI GCSGC 2 cut(s) 8, 681
TfiI GAWTC 5 cut(s) 64, 386, 454, 713, 930
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 4 cut(s) 11, 500, 872, 1469
Tsp45I GTSAC 4 cut(s) 11, 500, 872, 1469
TspDTI ATGAA 6 cut(s) 83, 207, 594, 1149, 1196, 1502
TspGWI ACGGA 1 cut(s) 1511
Van91I CCANNNNNTGG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 50, 1238
VspI ATTAAT 1 cut(s) 102
XceI RCATGY 2 cut(s) 880, 1258
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
XspI CTAG 4 cut(s) 161, 710, 857, 1196
ZrmI AGTACT 1 cut(s) 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.