Rh5AG298400
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
41660971 .. 41667130
6160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG298400.1

Sequence Viewer

Length: 1554 bp
ATGGCTTTCATTTCTGCTACATGTCCCGATTCCAGCTTCTTCTTGGAGTACAAAGATGAAAATGGTCTGCTGAGGAAGTCTTGCATGGCGGCGAGTCATAGAGTCGTTGGAGAGACAGGTCTTTCAGACTCGGGCCCTTCTTCTTCAAATCACCATGTTCCTTATGCCACTGTTCTTCATGGAATTAATGGTCCTTCAACAAGTTTCCTAAATCAAGAAGGATCTACTTTTGATTTTGGAGAGCTAGAAGAAGCAATTGCTCGTCAAGTTAGAAATGATGAAGCTCAAGCACCTTTGTTCACAGGAAGACCTGCTGCAACCCTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCACCAAACCCCAAGAGGGAGTTCAAAGTCAGCAGGAGGGGAGAGCACAGACTCAGGATCACAGGTGAACACCACCGCTCTTACAAGCAAAGGAGATCAGACTCAGTTGGAGCCAGAATCCCCCATAAGTAAAATAGCATCTTCTTCAAACAATCATCATCATCAGCACCAGGCTTTGGATCAGAATCATCTACAGTTCCAGCAGCAGCAGCATCTACAGCAAGACATGGCAATAAGTGACACCTCAAGAGCTACTACAGTAGCAGCAACAGGAACAACTGAAGCATCAAAAGGCCAGTCAGCTCCAAAACCAAATCATGAAAAGAGGAAGGGAGCTGGTTCTACATCAGAGAACAAACAGCTTGATGCTAAGACATTGAGGCGCTTAGCCCAAAATCGAGAAGCTGCGAGAAAAAGCCGCCTGAGGAAAAAGGCTTATGTGCAACAGCTAGAATCAAGTAGGATCAAGCTCACACAGCTTGAACAAGACCTTCAAAGAGCGCGTGCTCAGGGATTGTTGATGGGTGGGTGTGGAGGTGGTTTTGGCAATATCAGCTCAGCTGCTGCAATATTTGATATGGAATATGCAAGGTGGCTAGAAGACGACCACCGTCACATGTCGGAGATGCGAACCGGACTACAAGCACATTTGTCGGACAACGATCTCCGAGTCGTTGTAGATGGATACATTTCTCATTATGATGAGATTTTCCAGCTGAAAGGAGTGGCTGCGAAATCTGATGTGTTCCATCTCATAACTGGGATGTGGGCTTCTCAAGCTGAACGTTGCTTCCTTTGGATGGGCGGCTTTAGACCCTCTGACCTCATCAAGATGTTGACACAACAGTTAGACCCAATAACTGAACAGCAAGTGATGGGGATATGCAGCCTCCAACATTCATCACAACAGGCTGAAGAGGCTCTCACCCAAGGCTTAGACCAGCTTCATCAGTCTCTCATCGACACCATCGCCGGTGGACCCGTCATAGACGGCATGCAACAGATGGCCGTGGCTCTGGGCAAGCTCACTAATCTTGAAGGCTTCGTTCGCCAGGCTGACAATTTGAGACAGCAAACCCTTCACCAGTTGCGTCGGATATTGACAGTTCGCCAAGCAGCGCGGTGCTTTCTGGTAATCGGCGAGTACTATGGAAGATTAAGAGCACTTAGTTCTCTTTGGGCATCAAGACCGCGAGAGTAA

Protein Analysis

517

Amino Acids

57.07

Weight (kDa)

6.86

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 240 - 283 5.9e-06 Basic region leucine zipper
bZIP_1 PF00170 241 - 283 1.4e-07 bZIP transcription factor
DOG1 PF14144 323 - 398 1.2e-29 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AccB7I CCANNNNNTGG 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 431
AccII CGCG 3 cut(s) 856, 1474, 1546
AciI CCGC 6 cut(s) 89, 429, 772, 1158, 1474, 1544
AclI AACGTT 1 cut(s) 1138
AclWI GGATC 4 cut(s) 229, 418, 540, 824
AcoI YGGCCR 2 cut(s) 341, 1359
AcuI CTGAAG 2 cut(s) 654, 1287
AfaI GTAC 2 cut(s) 50, 1499
AfiI CCNNNNNNNGG 3 cut(s) 369, 529, 1153
AflIII ACRYGT 2 cut(s) 20, 969
AgsI TTSAA 7 cut(s) 147, 198, 378, 501, 836, 848, 1391
AjnI CCWGG 3 cut(s) 321, 522, 1404
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AloI GAACNNNNNNTCC 2 cut(s) 1128, 1160
Alw21I GWGCWC 3 cut(s) 401, 862, 1519
Alw26I GTCTC 3 cut(s) 107, 1311, 1414
AlwI GGATC 4 cut(s) 229, 418, 540, 824
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 4 cut(s) 133, 341, 646, 1359
ApaI GGGCCC 1 cut(s) 137
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AseI ATTAAT 1 cut(s) 186
AspLEI GCGC 3 cut(s) 738, 856, 1474
AspS9I GGNCC 4 cut(s) 133, 134, 191, 1331
AsuHPI GGTGA 4 cut(s) 143, 430, 1270, 1427
AvaI CYCGRG 1 cut(s) 130
AvaII GGWCC 2 cut(s) 191, 1331
AxyI CCTNAGG 1 cut(s) 776
BaeGI GKGCMC 1 cut(s) 137
BalI TGGCCA 1 cut(s) 343
BanII GRGCYC 1 cut(s) 137
BbsI GAAGAC 2 cut(s) 313, 960
Bbv12I GWGCWC 3 cut(s) 401, 862, 1519
BbvCI CCTCAGC 1 cut(s) 71
BccI CCATC 7 cut(s) 868, 1028, 1110, 1147, 1222, 1328, 1351
BceAI ACGGC 2 cut(s) 1346, 1360
BcgI CGANNNNNNTGC 2 cut(s) 987, 1021
BciT130I CCWGG 3 cut(s) 323, 524, 1406
BciVI GTATCC 1 cut(s) 1031
BcoDI GTCTC 3 cut(s) 107, 1311, 1414
BfaI CTAG 3 cut(s) 245, 803, 950
BfmI CTRYAG 3 cut(s) 545, 569, 609
BfoI RGCGCY 1 cut(s) 739
BfuAI ACCTGC 1 cut(s) 319
BfuI GTATCC 1 cut(s) 1031
BlpI GCTNAGC 2 cut(s) 739, 910
BmcAI AGTACT 1 cut(s) 1499
Bme1390I CCNGG 3 cut(s) 323, 524, 1406
Bme18I GGWCC 2 cut(s) 191, 1331
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 4 cut(s) 133, 134, 191, 1331
BmiI GGNNCC 3 cut(s) 135, 465, 1333
BmrFI CCNGG 3 cut(s) 323, 524, 1406
BmrI ACTGGG 1 cut(s) 1122
BmsI GCATC 6 cut(s) 500, 574, 647, 709, 969, 1544
BmuI ACTGGG 1 cut(s) 1122
BoxI GACNNNNGTC 1 cut(s) 963
BpiI GAAGAC 2 cut(s) 313, 960
Bpu10I CCTNAGC 2 cut(s) 71, 861
Bpu1102I GCTNAGC 2 cut(s) 739, 910
BpuEI CTTGAG 3 cut(s) 270, 583, 1113
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 3 cut(s) 321, 1282, 1362
BsaWI WCCGGW 1 cut(s) 986
Bsc4I CCNNNNNNNGG 3 cut(s) 369, 529, 1153
Bse118I RCCGGY 1 cut(s) 1325
Bse1I ACTGG 3 cut(s) 649, 1117, 1438
Bse21I CCTNAGG 1 cut(s) 776
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 3 cut(s) 323, 524, 1406
BseDI CCNNGG 3 cut(s) 321, 1282, 1362
BseGI GGATG 2 cut(s) 1122, 1158
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 369, 529, 1153
BseMII CTCAG 6 cut(s) 62, 420, 470, 767, 875, 924
BseNI ACTGG 3 cut(s) 649, 1117, 1438
BseSI GKGCMC 1 cut(s) 137
Bsh1236I CGCG 3 cut(s) 856, 1474, 1546
BshFI GGCC 4 cut(s) 135, 343, 648, 1361
BsiHKAI GWGCWC 3 cut(s) 401, 862, 1519
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 2 cut(s) 987, 1326
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 3 cut(s) 369, 529, 1153
BsmAI GTCTC 3 cut(s) 107, 1311, 1414
BsmFI GGGAC 1 cut(s) 9
BsnI GGCC 4 cut(s) 135, 343, 648, 1361
BsoBI CYCGRG 1 cut(s) 130
Bsp120I GGGCCC 1 cut(s) 133
Bsp1286I GDGCHC 4 cut(s) 137, 401, 862, 1519
Bsp143I GATC 6 cut(s) 221, 410, 448, 532, 816, 1015
Bsp1720I GCTNAGC 2 cut(s) 739, 910
BspACI CCGC 6 cut(s) 89, 429, 772, 1158, 1474, 1544
BspANI GGCC 4 cut(s) 135, 343, 648, 1361
BspCNI CTCAG 6 cut(s) 63, 419, 469, 768, 874, 923
BspFNI CGCG 3 cut(s) 856, 1474, 1546
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 3 cut(s) 135, 465, 1333
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 4 cut(s) 229, 418, 540, 824
BsrBI CCGCTC 1 cut(s) 431
BsrFI RCCGGY 1 cut(s) 1325
BsrI ACTGG 3 cut(s) 649, 1117, 1438
BssAI RCCGGY 1 cut(s) 1325
BssECI CCNNGG 3 cut(s) 321, 1282, 1362
BssMI GATC 6 cut(s) 221, 410, 448, 532, 816, 1015
BssT1I CCWWGG 1 cut(s) 1282
Bst2UI CCWGG 3 cut(s) 323, 524, 1406
Bst4CI ACNGT 6 cut(s) 172, 549, 613, 965, 1200, 1459
Bst6I CTCTTC 1 cut(s) 1263
BstC8I GCNNGC 3 cut(s) 858, 1349, 1376
BstDSI CCRYGG 1 cut(s) 1362
BstF5I GGATG 2 cut(s) 1122, 1158
BstFNI CGCG 3 cut(s) 856, 1474, 1546
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 3 cut(s) 738, 856, 1474
BstKTI GATC 6 cut(s) 224, 413, 451, 535, 819, 1018
BstMAI GTCTC 3 cut(s) 107, 1311, 1414
BstMBI GATC 6 cut(s) 221, 410, 448, 532, 816, 1015
BstMWI GCNNNNNNNGC 7 cut(s) 562, 571, 829, 906, 1130, 1271, 1401
BstNI CCWGG 3 cut(s) 323, 524, 1406
BstNSI RCATGY 3 cut(s) 24, 973, 1351
BstPAI GACNNNNGTC 1 cut(s) 963
BstSCI CCNGG 3 cut(s) 321, 522, 1404
BstSFI CTRYAG 3 cut(s) 545, 569, 609
BstSLI GKGCMC 1 cut(s) 137
BstUI CGCG 3 cut(s) 856, 1474, 1546
BstV2I GAAGAC 2 cut(s) 313, 960
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
Bsu36I CCTNAGG 1 cut(s) 776
BsuI GTATCC 1 cut(s) 1031
BsuRI GGCC 4 cut(s) 135, 343, 648, 1361
BtgI CCRYGG 1 cut(s) 1362
BtgZI GCGATG 1 cut(s) 1306
BtsCI GGATG 2 cut(s) 1122, 1158
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 3 cut(s) 858, 1349, 1376
CaiI CAGNNNCTG 1 cut(s) 917
CciI TCATGA 1 cut(s) 670
CfoI GCGC 3 cut(s) 738, 856, 1474
Cfr10I RCCGGY 1 cut(s) 1325
Cfr13I GGNCC 4 cut(s) 133, 134, 191, 1331
CseI GACGC 1 cut(s) 1433
Csp6I GTAC 2 cut(s) 49, 1498
CviAII CATG 8 cut(s) 21, 85, 155, 179, 580, 671, 970, 1348
CviQI GTAC 2 cut(s) 49, 1498
DpnI GATC 6 cut(s) 223, 412, 450, 534, 818, 1017
DpnII GATC 6 cut(s) 221, 410, 448, 532, 816, 1015
EaeI YGGCCR 2 cut(s) 341, 1359
Eam1104I CTCTTC 1 cut(s) 1263
EarI CTCTTC 1 cut(s) 1263
Eco130I CCWWGG 1 cut(s) 1282
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 191, 1331
Eco57I CTGAAG 2 cut(s) 654, 1287
Eco81I CCTNAGG 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 3 cut(s) 321, 522, 1404
EcoT14I CCWWGG 1 cut(s) 1282
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 1282
FaeI CATG 8 cut(s) 24, 88, 158, 182, 583, 674, 973, 1351
FaqI GGGAC 1 cut(s) 9
FatI CATG 8 cut(s) 20, 84, 154, 178, 579, 670, 969, 1347
FokI GGATG 2 cut(s) 1129, 1165
FriOI GRGCYC 1 cut(s) 137
FspBI CTAG 3 cut(s) 245, 803, 950
GlaI GCGC 3 cut(s) 737, 855, 1473
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 4 cut(s) 135, 343, 648, 1361
HapII CCGG 2 cut(s) 987, 1326
HgaI GACGC 1 cut(s) 1433
HhaI GCGC 3 cut(s) 738, 856, 1474
Hin1II CATG 8 cut(s) 24, 88, 158, 182, 583, 674, 973, 1351
Hin6I GCGC 3 cut(s) 736, 854, 1472
HinP1I GCGC 3 cut(s) 736, 854, 1472
HincII GTYRAC 1 cut(s) 1191
HindII GTYRAC 1 cut(s) 1191
HpaII CCGG 2 cut(s) 987, 1326
HphI GGTGA 4 cut(s) 143, 430, 1270, 1427
Hpy166II GTNNAC 4 cut(s) 300, 421, 1191, 1331
Hpy188III TCNNGA 9 cut(s) 26, 215, 408, 600, 671, 752, 1183, 1388, 1539
Hpy8I GTNNAC 4 cut(s) 300, 421, 1191, 1331
Hpy99I CGWCG 1 cut(s) 1449
HpyAV CCTTC 8 cut(s) 147, 204, 212, 345, 676, 854, 1385, 1442
HpyCH4III ACNGT 6 cut(s) 172, 549, 613, 965, 1200, 1459
HpyCH4IV ACGT 1 cut(s) 1138
HpyCH4V TGCA 7 cut(s) 84, 317, 796, 920, 941, 1239, 1351
HpyF10VI GCNNNNNNNGC 7 cut(s) 562, 571, 829, 906, 1130, 1271, 1401
HpySE526I ACGT 1 cut(s) 1138
Hsp92II CATG 8 cut(s) 24, 88, 158, 182, 583, 674, 973, 1351
HspAI GCGC 3 cut(s) 736, 854, 1472
Kzo9I GATC 6 cut(s) 221, 410, 448, 532, 816, 1015
LmnI GCTCC 3 cut(s) 463, 661, 686
LweI GCATC 6 cut(s) 500, 574, 647, 709, 969, 1544
MaeI CTAG 3 cut(s) 245, 803, 950
MaeII ACGT 1 cut(s) 1138
MaeIII GTNAC 2 cut(s) 590, 965
MalI GATC 6 cut(s) 223, 412, 450, 534, 818, 1017
MbiI CCGCTC 1 cut(s) 431
MboI GATC 6 cut(s) 221, 410, 448, 532, 816, 1015
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 4 cut(s) 137, 401, 862, 1519
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 3 cut(s) 183, 255, 1414
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 6 cut(s) 103, 111, 122, 398, 448, 1032
MmeI TCCRAC 6 cut(s) 88, 441, 954, 987, 1270, 1427
Mox20I TGGCCA 1 cut(s) 343
MscI TGGCCA 1 cut(s) 343
MseI TTAA 2 cut(s) 186, 1511
MslI CAYNNNNRTG 2 cut(s) 1053, 1184
Msp20I TGGCCA 1 cut(s) 343
MspA1I CMGCKG 2 cut(s) 914, 1069
MspI CCGG 2 cut(s) 987, 1326
MspR9I CCNGG 3 cut(s) 323, 524, 1406
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 3 cut(s) 323, 524, 1406
MvnI CGCG 3 cut(s) 856, 1474, 1546
MwoI GCNNNNNNNGC 7 cut(s) 562, 571, 829, 906, 1130, 1271, 1401
NdeII GATC 6 cut(s) 221, 410, 448, 532, 816, 1015
NlaIII CATG 8 cut(s) 24, 88, 158, 182, 583, 674, 973, 1351
NlaIV GGNNCC 3 cut(s) 135, 465, 1333
NmuCI GTSAC 2 cut(s) 590, 965
NspI RCATGY 3 cut(s) 24, 973, 1351
PaeI GCATGC 1 cut(s) 1351
PagI TCATGA 1 cut(s) 670
PciI ACATGT 2 cut(s) 20, 969
PfeI GAWTC 5 cut(s) 29, 351, 470, 538, 806
PflMI CCANNNNNTGG 1 cut(s) 529
PleI GAGTC 6 cut(s) 102, 110, 122, 398, 448, 1031
PpsI GAGTC 6 cut(s) 102, 110, 122, 398, 448, 1031
PscI ACATGT 2 cut(s) 20, 969
PshAI GACNNNNGTC 1 cut(s) 963
PshBI ATTAAT 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 1138
Psp6I CCWGG 3 cut(s) 321, 522, 1404
PspGI CCWGG 3 cut(s) 321, 522, 1404
PspN4I GGNNCC 3 cut(s) 135, 465, 1333
PspOMI GGGCCC 1 cut(s) 133
PspPI GGNCC 4 cut(s) 133, 134, 191, 1331
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 221
PvuII CAGCTG 2 cut(s) 914, 1069
RsaI GTAC 2 cut(s) 50, 1499
RsaNI GTAC 2 cut(s) 49, 1498
RseI CAYNNNNRTG 2 cut(s) 1053, 1184
SaqAI TTAA 2 cut(s) 186, 1511
Sau3AI GATC 6 cut(s) 221, 410, 448, 532, 816, 1015
Sau96I GGNCC 4 cut(s) 133, 134, 191, 1331
ScaI AGTACT 1 cut(s) 1499
SchI GAGTC 6 cut(s) 103, 111, 122, 398, 448, 1032
ScrFI CCNGG 3 cut(s) 323, 524, 1406
SduI GDGCHC 4 cut(s) 137, 401, 862, 1519
SfaNI GCATC 6 cut(s) 500, 574, 647, 709, 969, 1544
SfcI CTRYAG 3 cut(s) 545, 569, 609
SgrAI CRCCGGYG 1 cut(s) 1325
SinI GGWCC 2 cut(s) 191, 1331
SmiMI CAYNNNNRTG 2 cut(s) 1053, 1184
SmlI CTYRAG 3 cut(s) 285, 598, 1128
SmoI CTYRAG 3 cut(s) 285, 598, 1128
SphI GCATGC 1 cut(s) 1351
Sse9I AATT 3 cut(s) 183, 255, 1414
SsiI CCGC 6 cut(s) 89, 429, 772, 1158, 1474, 1544
SspI AATATT 1 cut(s) 924
SspMI CTAG 3 cut(s) 245, 803, 950
StyD4I CCNGG 3 cut(s) 321, 522, 1404
StyI CCWWGG 1 cut(s) 1282
TaaI ACNGT 6 cut(s) 172, 549, 613, 965, 1200, 1459
TaiI ACGT 1 cut(s) 1141
TaqI TCGA 2 cut(s) 751, 1314
TasI AATT 3 cut(s) 183, 255, 1414
TatI WGTACW 2 cut(s) 48, 1497
TauI GCSGC 3 cut(s) 92, 774, 1161
TfiI GAWTC 5 cut(s) 29, 351, 470, 538, 806
Tru1I TTAA 2 cut(s) 186, 1511
Tru9I TTAA 2 cut(s) 186, 1511
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 590, 965
Tsp45I GTSAC 2 cut(s) 590, 965
TspDTI ATGAA 6 cut(s) 72, 167, 294, 687, 1242, 1289
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 529
VpaK11BI GGWCC 2 cut(s) 191, 1331
VspI ATTAAT 1 cut(s) 186
XceI RCATGY 3 cut(s) 24, 973, 1351
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 1109
XspI CTAG 3 cut(s) 245, 803, 950
ZrmI AGTACT 1 cut(s) 1499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.