Rmu_sc0000159.1_g000019

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000159.1
OG0018459
Physical Location & Seq
Reverse (-)
51037 .. 56082
5046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000159.1_g000019.1.cds

Sequence Viewer

Length: 1074 bp
atgcctagaactacctcaacaattaaggggcaaaatgttccttgccaaaaaccgaaccctcgacgccggtttggtggccggagacggccggaaacggaagatatcggcgttgaccacttctgctacagtgaaacttcaaggacccgatgcgtcattttccggccaagtcgccgtgagttaccgccgtggggaggtcgggtaggggtagaggagtcgaccggtgctgcttgttctctcccaagtggccggaagagggagatggccttaccgccgtggggaggttgggtaggggtagaggagtcgaccgagtccgatgtcaaaatatatattcattgtgatattgtactcaatgcagaatctcttgatgtacttgagaattgggttttggaattgtttggtaacatcataaaaggtccccatgtaaatctggaattcaaggcagaaggtccaatttggaaagctggaaaactttataggctagaggctgttaaagatgttcagtgggagaggagaggcagcagccaatacacccaagcggatattgatcaagtgcaaaataagtgggggaacttaaaactggcactgttgtctgaagacagcgcctcaactgctgcgcagctgcgcttcacatctgccgagctatcacacaacagttataacacaaacctgttgtttgtatgtttatcacacaactgtgttccaccgttgtctgatgaaaaatccagacaacggctcactttacaacagtgggactccaaatcccacatcgagtttgcaaaaacatggccaactacaaactttgggttcttcaaatctacccttctattccaagacttcaacttaattcctctccaagtggggaagggaagtggattaccttcttcacttccactcgatgcagaatctcttgatgtacttgagaattgggttttggaattgtttggtaacatcataaaaggtccccatgtaaatatggaattcaaggcagaaggtccaatttggaaagctggaaaactttataggctagaggttgttaaagatgttcagtgggagaggagaggcagcaaccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

357

Amino Acids

40.45

Weight (kDa)

8.1

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018459)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23070
rosa_chinensis RchiOBHm_Chr2g0132461 RchiOBHm_Chr5g0044431 RchiOBHm_Chr6g0278561
rosa_laevigata RLG00000018508
rosa_multiflora Rmu_sc0000159.1_g000019 Rmu_sc0000723.1_g000010 Rmu_sc0004935.1_g000033
rosa_rugosa Rorug05G0214000
rosa_wichuraiana Rw1G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 657
Acc16I TGCGCA 1 cut(s) 615
AccI GTMKAC 2 cut(s) 215, 302
AciI CCGC 3 cut(s) 182, 269, 536
AcoI YGGCCR 5 cut(s) 76, 86, 161, 244, 785
AcsI RAATTY 2 cut(s) 431, 977
AcuI CTGAAG 1 cut(s) 612
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 3 cut(s) 345, 369, 915
AfiI CCNNNNNNNGG 6 cut(s) 188, 191, 253, 275, 278, 729
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 5 cut(s) 138, 436, 811, 838, 982
AjuI GAANNNNNNNTTGG 4 cut(s) 368, 400, 914, 946
AleI CACNNNNGTG 1 cut(s) 693
AluBI AGCT 4 cut(s) 461, 619, 640, 1007
AluI AGCT 4 cut(s) 461, 619, 640, 1007
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 6 cut(s) 76, 86, 161, 244, 261, 785
ApeKI GCWGC 7 cut(s) 224, 516, 519, 611, 616, 619, 1062
ApoI RAATTY 2 cut(s) 431, 977
AsiGI ACCGGT 1 cut(s) 218
AspLEI GCGC 3 cut(s) 602, 616, 624
AspS9I GGNCC 5 cut(s) 141, 413, 446, 959, 992
AvaII GGWCC 5 cut(s) 141, 413, 446, 959, 992
BalI TGGCCA 1 cut(s) 787
BbsI GAAGAC 1 cut(s) 600
BbvI GCAGC 6 cut(s) 211, 528, 531, 598, 606, 628
BccI CCATC 1 cut(s) 253
BceAI ACGGC 5 cut(s) 101, 156, 169, 256, 746
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 3 cut(s) 6, 479, 1025
BfmI CTRYAG 1 cut(s) 124
BfoI RGCGCY 1 cut(s) 603
BisI GCNGC 7 cut(s) 225, 517, 520, 612, 617, 620, 1063
BlsI GCNGC 7 cut(s) 226, 518, 521, 613, 618, 621, 1064
Bme18I GGWCC 5 cut(s) 141, 413, 446, 959, 992
BmgT120I GGNCC 5 cut(s) 141, 413, 446, 959, 992
BmiI GGNNCC 3 cut(s) 143, 415, 961
BmsI GCATC 2 cut(s) 137, 886
BpiI GAAGAC 1 cut(s) 600
BpuEI CTTGAG 2 cut(s) 392, 938
BsaBI GATNNNNATC 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 185, 272
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 270, 300
Bsc4I CCNNNNNNNGG 6 cut(s) 188, 191, 253, 275, 278, 729
Bse118I RCCGGY 2 cut(s) 66, 218
Bse1I ACTGG 1 cut(s) 582
Bse8I GATNNNNATC 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 185, 272
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 6 cut(s) 188, 191, 253, 275, 278, 729
BseNI ACTGG 1 cut(s) 582
BseRI GAGGAG 4 cut(s) 224, 311, 523, 1069
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 6 cut(s) 211, 528, 531, 598, 606, 628
Bsh1285I CGRYCG 3 cut(s) 89, 219, 306
BshFI GGCC 6 cut(s) 78, 88, 163, 246, 263, 787
BshTI ACCGGT 1 cut(s) 218
BsiEI CGRYCG 3 cut(s) 89, 219, 306
BsiSI CCGG 6 cut(s) 67, 79, 89, 160, 219, 247
BslFI GGGAC 3 cut(s) 399, 764, 945
BslI CCNNNNNNNGG 6 cut(s) 188, 191, 253, 275, 278, 729
BsmAI GTCTC 1 cut(s) 76
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 3 cut(s) 399, 764, 945
BsnI GGCC 6 cut(s) 78, 88, 163, 246, 263, 787
Bsp143I GATC 1 cut(s) 544
BspACI CCGC 3 cut(s) 182, 269, 536
BspANI GGCC 6 cut(s) 78, 88, 163, 246, 263, 787
BspLI GGNNCC 3 cut(s) 143, 415, 961
BsrFI RCCGGY 2 cut(s) 66, 218
BsrI ACTGG 1 cut(s) 582
BssAI RCCGGY 2 cut(s) 66, 218
BssECI CCNNGG 2 cut(s) 185, 272
BssMI GATC 1 cut(s) 544
BssNI GRCGYC 1 cut(s) 64
Bst4CI ACNGT 6 cut(s) 128, 585, 653, 695, 705, 747
Bst6I CTCTTC 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 64
BstDSI CCRYGG 2 cut(s) 185, 272
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 3 cut(s) 602, 616, 624
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 544
BstMCI CGRYCG 3 cut(s) 89, 219, 306
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 6 cut(s) 211, 528, 531, 598, 606, 628
BstV2I GAAGAC 1 cut(s) 600
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 6 cut(s) 78, 88, 163, 246, 263, 787
BtgI CCRYGG 2 cut(s) 185, 272
BtsIMutI CAGTG 5 cut(s) 133, 506, 581, 752, 1052
CfoI GCGC 3 cut(s) 602, 616, 624
Cfr10I RCCGGY 2 cut(s) 66, 218
Cfr13I GGNCC 5 cut(s) 141, 413, 446, 959, 992
CseI GACGC 2 cut(s) 72, 139
Csp6I GTAC 3 cut(s) 344, 368, 914
CspAI ACCGGT 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 542, 577
CviAII CATG 3 cut(s) 419, 783, 965
CviQI GTAC 3 cut(s) 344, 368, 914
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
EaeI YGGCCR 5 cut(s) 76, 86, 161, 244, 785
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
EclXI CGGCCG 1 cut(s) 86
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 5 cut(s) 141, 413, 446, 959, 992
Eco52I CGGCCG 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 612
EcoO109I RGGNCCY 3 cut(s) 141, 413, 959
EcoRI GAATTC 2 cut(s) 431, 977
EcoRV GATATC 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 3 cut(s) 422, 786, 968
FaqI GGGAC 3 cut(s) 399, 764, 945
FatI CATG 3 cut(s) 418, 782, 964
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 2 cut(s) 215, 302
Fnu4HI GCNGC 7 cut(s) 225, 517, 520, 612, 617, 620, 1063
Fsp4HI GCNGC 7 cut(s) 225, 517, 520, 612, 617, 620, 1063
FspBI CTAG 3 cut(s) 6, 479, 1025
FspI TGCGCA 1 cut(s) 615
GlaI GCGC 3 cut(s) 601, 615, 623
GluI GCNGC 7 cut(s) 225, 517, 520, 612, 617, 620, 1063
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 6 cut(s) 78, 88, 163, 246, 263, 787
HapII CCGG 6 cut(s) 67, 79, 89, 160, 219, 247
HgaI GACGC 2 cut(s) 72, 139
HhaI GCGC 3 cut(s) 602, 616, 624
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 3 cut(s) 422, 786, 968
Hin6I GCGC 3 cut(s) 600, 614, 622
HinP1I GCGC 3 cut(s) 600, 614, 622
HincII GTYRAC 3 cut(s) 112, 216, 303
HindII GTYRAC 3 cut(s) 112, 216, 303
HinfI GANTC 6 cut(s) 212, 299, 308, 356, 752, 902
HpaII CCGG 6 cut(s) 67, 79, 89, 160, 219, 247
Hpy166II GTNNAC 3 cut(s) 112, 216, 303
Hpy188I TCNGA 3 cut(s) 313, 592, 712
Hpy188III TCNNGA 4 cut(s) 362, 428, 723, 908
Hpy8I GTNNAC 3 cut(s) 112, 216, 303
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 5 cut(s) 437, 830, 856, 888, 983
HpyCH4III ACNGT 6 cut(s) 128, 585, 653, 695, 705, 747
HpyCH4V TGCA 4 cut(s) 353, 553, 776, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 3 cut(s) 422, 786, 968
HspAI GCGC 3 cut(s) 600, 614, 622
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 1 cut(s) 544
Lsp1109I GCAGC 6 cut(s) 211, 528, 531, 598, 606, 628
LweI GCATC 2 cut(s) 137, 886
MaeI CTAG 3 cut(s) 6, 479, 1025
MaeIII GTNAC 3 cut(s) 177, 398, 944
MalI GATC 1 cut(s) 546
MboI GATC 1 cut(s) 544
MboII GAAGA 5 cut(s) 110, 262, 605, 799, 873
MlsI TGGCCA 1 cut(s) 787
MluNI TGGCCA 1 cut(s) 787
MlyI GAGTC 4 cut(s) 221, 308, 317, 746
Mox20I TGGCCA 1 cut(s) 787
MscI TGGCCA 1 cut(s) 787
MseI TTAA 5 cut(s) 24, 489, 572, 842, 1035
MslI CAYNNNNRTG 1 cut(s) 693
Msp20I TGGCCA 1 cut(s) 787
MspA1I CMGCKG 1 cut(s) 619
MspI CCGG 6 cut(s) 67, 79, 89, 160, 219, 247
MwoI GCNNNNNNNGC 1 cut(s) 608
NdeII GATC 1 cut(s) 544
NlaIII CATG 3 cut(s) 422, 786, 968
NlaIV GGNNCC 3 cut(s) 143, 415, 961
NmeAIII GCCGAG 1 cut(s) 661
NsbI TGCGCA 1 cut(s) 615
OliI CACNNNNGTG 1 cut(s) 693
PfeI GAWTC 2 cut(s) 356, 902
PflFI GACNNNGTC 1 cut(s) 307
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 7 cut(s) 226, 518, 521, 613, 618, 621, 1064
PleI GAGTC 4 cut(s) 220, 307, 316, 746
PpsI GAGTC 4 cut(s) 220, 307, 316, 746
PpuMI RGGWCCY 3 cut(s) 141, 413, 959
PsiI TTATAA 1 cut(s) 657
Psp5II RGGWCCY 3 cut(s) 141, 413, 959
PspN4I GGNNCC 3 cut(s) 143, 415, 961
PspPI GGNCC 5 cut(s) 141, 413, 446, 959, 992
PspPPI RGGWCCY 3 cut(s) 141, 413, 959
PsyI GACNNNGTC 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 619
RsaI GTAC 3 cut(s) 345, 369, 915
RsaNI GTAC 3 cut(s) 344, 368, 914
RseI CAYNNNNRTG 1 cut(s) 693
SalI GTCGAC 2 cut(s) 214, 301
SaqAI TTAA 5 cut(s) 24, 489, 572, 842, 1035
SatI GCNGC 7 cut(s) 225, 517, 520, 612, 617, 620, 1063
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 5 cut(s) 141, 413, 446, 959, 992
SchI GAGTC 4 cut(s) 221, 308, 317, 746
SfaNI GCATC 2 cut(s) 137, 886
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 5 cut(s) 141, 413, 446, 959, 992
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 371, 917
SmoI CTYRAG 2 cut(s) 371, 917
SsiI CCGC 3 cut(s) 182, 269, 536
SspMI CTAG 3 cut(s) 6, 479, 1025
TaaI ACNGT 6 cut(s) 128, 585, 653, 695, 705, 747
TaqI TCGA 5 cut(s) 61, 215, 302, 768, 894
TaqII GACCGA 1 cut(s) 320
TatI WGTACW 3 cut(s) 343, 367, 913
TfiI GAWTC 2 cut(s) 356, 902
Tru1I TTAA 5 cut(s) 24, 489, 572, 842, 1035
Tru9I TTAA 5 cut(s) 24, 489, 572, 842, 1035
TscAI CASTG 5 cut(s) 133, 506, 588, 752, 1052
TseI GCWGC 7 cut(s) 224, 516, 519, 611, 616, 619, 1062
TspDTI ATGAA 2 cut(s) 320, 729
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 5 cut(s) 133, 506, 588, 752, 1052
Tth111I GACNNNGTC 1 cut(s) 307
VpaK11BI GGWCC 5 cut(s) 141, 413, 446, 959, 992
XapI RAATTY 2 cut(s) 431, 977
XmiI GTMKAC 2 cut(s) 215, 302
XspI CTAG 3 cut(s) 6, 479, 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.