Rmu_sc0000723.1_g000010

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000723.1
OG0018459
Physical Location & Seq
Reverse (-)
65208 .. 66792
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000723.1_g000010.1.cds

Sequence Viewer

Length: 864 bp
atgcccaaccctactgcaaacatgcctgcaaggaaggaagtccctacgagaggacgtagtgccaccctacacagaggtaggcatggcgccaacgccaatgagagtggcactttggcgttacaagtcatggccccagctaggatgaatgggagacccgtgggtttgaagcatactttggcacactccaatcctttaatcatcgacactcaaaatccgtctcatgagtatcttcctgtgccggaaacgacgggaaccggaaccgagaaccttaggatcggttttcccgtttcaacggcgggcgatggactcaggcgggtcaaggatgacggtgcggggatacagagacgagtattccttcaattgctgattccattcgtcgtcgtagagcttgtggatgatgcagtcgaaggggccttactgggtcaaggccttggcagcatcaacagggaccagatcgatgccgtgttgtccggcgtgggtaatcagcgacggttggatgaaggtctgctctttctttggcaggaaggcgtagagtccattgttattacattgacatataatatcctgctttttaatgctccagagtccgatgtcaaaatatatattcattgtgatattgtactcaatgcagaatctcttgatgtacttgagaattgggttttggaattgtttggtaacatcataaaaggtccccatgtaaatctggaattcaaggcagaaggtccaatttggaaagctggaaaactttacaggctagaggctgttaaagatgttcagtgggagaggagaggcagcagccaatacacccaagcggatattgatcaagtgcgaaataagtgggggaagtttgttgtcaacacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

287

Amino Acids

31.65

Weight (kDa)

6.18

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018459)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23070
rosa_chinensis RchiOBHm_Chr2g0132461 RchiOBHm_Chr5g0044431 RchiOBHm_Chr6g0278561
rosa_laevigata RLG00000018508
rosa_multiflora Rmu_sc0000159.1_g000019 Rmu_sc0000723.1_g000010 Rmu_sc0004935.1_g000033
rosa_rugosa Rorug05G0214000
rosa_wichuraiana Rw1G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 4 cut(s) 296, 313, 332, 812
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 707
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 621, 645
AfiI CCNNNNNNNGG 2 cut(s) 50, 138
AgsI TTSAA 4 cut(s) 166, 291, 359, 712
AjuI GAANNNNNNNTTGG 4 cut(s) 158, 190, 644, 676
AluBI AGCT 3 cut(s) 137, 388, 737
AluI AGCT 3 cut(s) 137, 388, 737
Alw26I GTCTC 3 cut(s) 145, 222, 337
AlwI GGATC 1 cut(s) 281
AoxI GGCC 3 cut(s) 129, 411, 427
ApeKI GCWGC 3 cut(s) 435, 792, 795
ApoI RAATTY 1 cut(s) 707
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 5 cut(s) 130, 411, 448, 689, 722
AvaII GGWCC 3 cut(s) 448, 689, 722
AxyI CCTNAGG 1 cut(s) 269
BanI GGYRCC 1 cut(s) 86
BarI GAAGNNNNNNTAC 2 cut(s) 399, 431
BbvI GCAGC 3 cut(s) 447, 804, 807
BccI CCATC 1 cut(s) 296
BceAI ACGGC 2 cut(s) 309, 446
BciVI GTATCC 1 cut(s) 330
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 3 cut(s) 145, 222, 337
BfaI CTAG 2 cut(s) 138, 755
BfoI RGCGCY 1 cut(s) 90
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 3 cut(s) 436, 793, 796
BlsI GCNGC 3 cut(s) 437, 794, 797
Bme18I GGWCC 3 cut(s) 448, 689, 722
BmgT120I GGNCC 5 cut(s) 130, 411, 448, 689, 722
BmiI GGNNCC 7 cut(s) 88, 132, 253, 259, 412, 449, 691
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 3 cut(s) 388, 447, 448
BmuI ACTGGG 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 668
Bsa29I ATCGAT 1 cut(s) 456
BsaBI GATNNNNATC 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 156, 430
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 138
Bse1I ACTGG 1 cut(s) 423
Bse21I CCTNAGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 819
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 156, 430
BseGI GGATG 4 cut(s) 147, 328, 400, 502
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 2 cut(s) 50, 138
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 799
BseXI GCAGC 3 cut(s) 447, 804, 807
BseYI CCCAGC 1 cut(s) 133
BshFI GGCC 3 cut(s) 131, 413, 429
BshNI GGYRCC 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 3 cut(s) 239, 255, 471
BslFI GGGAC 3 cut(s) 26, 461, 675
BslI CCNNNNNNNGG 2 cut(s) 50, 138
BsmAI GTCTC 3 cut(s) 145, 222, 337
BsmBI CGTCTC 2 cut(s) 222, 337
BsmFI GGGAC 3 cut(s) 26, 461, 675
BsnI GGCC 3 cut(s) 131, 413, 429
Bso31I GGTCTC 1 cut(s) 145
Bsp143I GATC 3 cut(s) 273, 453, 820
BspACI CCGC 4 cut(s) 296, 313, 332, 812
BspANI GGCC 3 cut(s) 131, 413, 429
BspCNI CTCAG 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 456
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 7 cut(s) 88, 132, 253, 259, 412, 449, 691
BspPI GGATC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 156, 430
BssMI GATC 3 cut(s) 273, 453, 820
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 329, 492
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 27, 298
BstDEI CTNAG 2 cut(s) 269, 308
BstDSI CCRYGG 1 cut(s) 156
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 4 cut(s) 147, 328, 400, 502
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 3 cut(s) 276, 456, 823
BstMAI GTCTC 3 cut(s) 145, 222, 337
BstMBI GATC 3 cut(s) 273, 453, 820
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 447, 804, 807
Bsu15I ATCGAT 1 cut(s) 456
Bsu36I CCTNAGG 1 cut(s) 269
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 3 cut(s) 131, 413, 429
BsuTUI ATCGAT 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 4 cut(s) 147, 328, 400, 502
BtsIMutI CAGTG 1 cut(s) 782
Cac8I GCNNGC 2 cut(s) 27, 298
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 5 cut(s) 130, 411, 448, 689, 722
ClaI ATCGAT 1 cut(s) 456
Csp6I GTAC 2 cut(s) 620, 644
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 6 cut(s) 22, 83, 127, 221, 695, 861
CviJI RGCY 9 cut(s) 131, 137, 388, 413, 429, 737, 754, 761, 798
CviKI_1 RGCY 9 cut(s) 131, 137, 388, 413, 429, 737, 754, 761, 798
CviQI GTAC 2 cut(s) 620, 644
DdeI CTNAG 2 cut(s) 269, 308
DinI GGCGCC 1 cut(s) 88
DpnI GATC 3 cut(s) 275, 455, 822
DpnII GATC 3 cut(s) 273, 453, 820
Eco130I CCWWGG 1 cut(s) 430
Eco147I AGGCCT 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 145
Eco47I GGWCC 3 cut(s) 448, 689, 722
Eco81I CCTNAGG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoO109I RGGNCCY 2 cut(s) 411, 689
EcoRI GAATTC 1 cut(s) 707
EcoT14I CCWWGG 1 cut(s) 430
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 2 cut(s) 222, 337
FaeI CATG 6 cut(s) 25, 86, 130, 224, 698, 864
FaqI GGGAC 3 cut(s) 26, 461, 675
FatI CATG 6 cut(s) 21, 82, 126, 220, 694, 860
FauI CCCGC 3 cut(s) 289, 306, 325
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 3 cut(s) 436, 793, 796
FokI GGATG 4 cut(s) 154, 335, 407, 509
Fsp4HI GCNGC 3 cut(s) 436, 793, 796
FspBI CTAG 2 cut(s) 138, 755
GlaI GCGC 1 cut(s) 88
GluI GCNGC 3 cut(s) 436, 793, 796
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 3 cut(s) 131, 413, 429
HapII CCGG 3 cut(s) 239, 255, 471
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 6 cut(s) 25, 86, 130, 224, 698, 864
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 5 cut(s) 306, 367, 533, 584, 632
HpaII CCGG 3 cut(s) 239, 255, 471
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 1 cut(s) 589
Hpy188III TCNNGA 4 cut(s) 221, 581, 638, 704
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 4 cut(s) 250, 380, 383, 492
HpyAV CCTTC 6 cut(s) 28, 365, 401, 494, 518, 713
HpyCH4III ACNGT 2 cut(s) 329, 492
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 17, 29, 401, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 2 cut(s) 269, 308
HpySE526I ACGT 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 6 cut(s) 25, 86, 130, 224, 698, 864
HspAI GCGC 1 cut(s) 87
KasI GGCGCC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 3 cut(s) 273, 453, 820
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 3 cut(s) 447, 804, 807
LweI GCATC 3 cut(s) 388, 447, 448
MaeI CTAG 2 cut(s) 138, 755
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 117, 674
MalI GATC 3 cut(s) 275, 455, 822
MboI GATC 3 cut(s) 273, 453, 820
MboII GAAGA 1 cut(s) 221
MfeI CAATTG 1 cut(s) 359
MluCI AATT 5 cut(s) 359, 652, 665, 707, 726
Mly113I GGCGCC 1 cut(s) 87
MlyI GAGTC 3 cut(s) 300, 542, 593
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 5 cut(s) 44, 68, 751, 777, 782
MseI TTAA 3 cut(s) 194, 573, 765
MspI CCGG 3 cut(s) 239, 255, 471
MunI CAATTG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 435
NarI GGCGCC 1 cut(s) 87
NdeII GATC 3 cut(s) 273, 453, 820
NlaIII CATG 6 cut(s) 25, 86, 130, 224, 698, 864
NlaIV GGNNCC 7 cut(s) 88, 132, 253, 259, 412, 449, 691
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 220
PceI AGGCCT 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 2 cut(s) 367, 632
PkrI GCNGC 3 cut(s) 437, 794, 797
PleI GAGTC 3 cut(s) 300, 541, 592
PluTI GGCGCC 1 cut(s) 90
PpsI GAGTC 3 cut(s) 300, 541, 592
PpuMI RGGWCCY 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 689
PspFI CCCAGC 1 cut(s) 133
PspN4I GGNNCC 7 cut(s) 88, 132, 253, 259, 412, 449, 691
PspPI GGNCC 5 cut(s) 130, 411, 448, 689, 722
PspPPI RGGWCCY 1 cut(s) 689
RsaI GTAC 2 cut(s) 621, 645
RsaNI GTAC 2 cut(s) 620, 644
SaqAI TTAA 3 cut(s) 194, 573, 765
SatI GCNGC 3 cut(s) 436, 793, 796
Sau3AI GATC 3 cut(s) 273, 453, 820
Sau96I GGNCC 5 cut(s) 130, 411, 448, 689, 722
SchI GAGTC 3 cut(s) 300, 542, 593
SetI ASST 9 cut(s) 58, 79, 139, 270, 390, 505, 691, 724, 739
SfaNI GCATC 3 cut(s) 388, 447, 448
SfoI GGCGCC 1 cut(s) 88
SinI GGWCC 3 cut(s) 448, 689, 722
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 5 cut(s) 359, 652, 665, 707, 726
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 4 cut(s) 296, 313, 332, 812
SspDI GGCGCC 1 cut(s) 86
SspMI CTAG 2 cut(s) 138, 755
StuI AGGCCT 1 cut(s) 429
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 329, 492
TaiI ACGT 1 cut(s) 58
TaqI TCGA 3 cut(s) 201, 405, 456
TasI AATT 5 cut(s) 359, 652, 665, 707, 726
TatI WGTACW 2 cut(s) 619, 643
TfiI GAWTC 2 cut(s) 367, 632
Tru1I TTAA 3 cut(s) 194, 573, 765
Tru9I TTAA 3 cut(s) 194, 573, 765
TscAI CASTG 1 cut(s) 782
TseI GCWGC 3 cut(s) 435, 792, 795
TspDTI ATGAA 3 cut(s) 158, 513, 596
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 782
VpaK11BI GGWCC 3 cut(s) 448, 689, 722
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 1 cut(s) 707
XceI RCATGY 1 cut(s) 25
XspI CTAG 2 cut(s) 138, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.