Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012780

Physical Location & Seq

Genomic Coordinates Forward (+)

45901601 .. 45905004

Gene Structure 3404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019069

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGCCCCAGACAGGCAAATCCACCCAAGAACCGGGTTTCGACTCGCTCCCGACTCGCTTCCGTGACTCAGTCACTTGCAATGACGACCACAATAAGAACAAGCCCGATTTCAAAGAGCTCGATCTTGGGGGCTCACCCGTCTCGCCCTTGATGACCAGGACCTCAGTGAACGGCGTTAACAACAATGGAGGTGGCGCCGCCACTACTTCCAGCTCCAGTTCGAGCTCTTCCGGTTCGGTTTCCAGCAAAACCCAGCTGGGGAGAAGATCCGACGGCAGTAGACCCAACAACCACTCCGGCGAGCTAACTGTCTCCTCCGAAATGAGCCCCAGAGCTTCCGAGAGCGTCCGATCCGGTACCACGCCGCGTAATTGGAAGCCGGAGCATCGGAGATCGGTCTCCGCCGGACCGCCGTTGATCTACTCCGGCAAAACGTTCACCGGCGGTAGTAACGGTAGTACCGGGGGTAGTGTTGGTAATGCTTGTGGAAATGTAGCAACCAATAATTCATCTTCAACCTCCACAACTGTGTTCCCCAGCGGCAATATATGCCCTTCCGGGAAAATTACGAAGTCTGGAATTGCGTGTAGAGCCAGCAGTAAGACTGATGTTTTGGGTTCGGGGTGCGGCAACTACGGCCACGGTAGCATAGTTCGAGGGGTTTCGAAATCGGATGCTACTAGTTCGAATGTGGGTGGCAACTTACAGCTTGGTGGGGAGTCCCTGGTGGTTAAGAGGGCAATGGGGAACTCTGATCCAGAGGAGGTGAAGAAGGCTGGGAATGAGATGTACAGGAAAGGCCATTTTGCGGAGGCATTGACAATGTATGATCGCGCTGTGTCTTTGTCTCCGGACAATGCTGCTTACCGGAGTAACAGGGCGGCGGCTCTGACCGCGCTGGGGCGGCTGGCCGAGGCTGTGAGGGAGTGTGAGGAGGCTGTCAGGTTGGACCCTGGTTATGGGAGGGCGCATCAACGGCTTGGTTCGCTTTATCTTCGTTTTGGGCTAGCTGAAAATGCCTCCCGCCATCTCTCATTTCCCGGACAAAGACCAGAACAGTCTGAGTTGCAGAAGTTGAAGTCACTGGAGAAGCATCTGAAACAATGTTCAGATGCCCGTAAGCTTGGTGATTGGAAGAATGTGCTAAGGGAATCGGATGCAGCCATAGAAATGGGAGTGGAGTCCTCCCCTCAGCTTGTGGCATCCAAGGCAGAAGCTCTATTGAAGCTCCATAAACTCGAAGATGCAGAATCCATCCTATCAAACATACCCAAGTTTGAAAATTACCCTTCTTCCTGCTTGCAAACCAAGTTATTTGGCATGCTTGTTGAAGCTTATGTACTCTATGTAAGGGCCCAGGTTGAAATGGCATTCGGAAGGTTTGAGAATGCAGTAGCAGCTGTAGAGAAGGCTGGTGTAATCGATTACAGCAATGTTGAAGTTACAAGGGTATCAAATATTGTGAAAATGGTTGCGAAAGCTCGTTCTCAAGGTAACGATCTTTTTAGCTCTGGAAGGTTCGCTGAAGCCTGCACTGCTTATGGGGAGGGCCTCAAGTATGATGGTTCCAATTCTGTTCTATACTGCAATAGAGCAGTTTGCTGGTCTAAGCTTGGACAATGGGAACATTCTGTTGAAGACTGCAACCAAGCCCTCAAGATTCAGCCTCATTACACCAAAGCCCTTCTAAGAAGGGCTGTGTCGAATGCAAAGTTAGAACGATGGGCAGAGGCAGTGAGAGATTATGAGGTCTTGAGGAGGGAACTCCCCGGAGACAATGAGGTTGTTGAATCTCTTCACCAGGCTCGAGTGGCATTGAGGAAGTTCCGTGGAGAGGAACTTCATCATGTAAAGTCTGGCGGTGAAGTGGAAGAAGTTTCTAATTTAAATAAGTTTAAAGCTGCAATATCATCACCTGGTGTTTCTGTCATTCATTTCAGAGTTGCATCCAATGAGCAATGTGAAGAACTATCCCCATTCATAAATATGCTTTGCGTTAGATATCCATCTGTTAAATTTTTTAAGGTGGATGTGGAGGAGAGCTTAGCCATAGCAAAAGCTGAGAGCATAAGATCTGTTCCAACATTCAAAATTTACAAGAATGGTGAAAAGGTCAAGGAGATGGTCCGCCCAAGCCACCAGTTCTTAGAGGACTCTGTGAGAACCAGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_6 TPR_8 Thioredoxin

Protein Analysis

725

Amino Acids

78.47

Weight (kDa)

8.96

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	259 - 320	1.2e-08	Tetratricopeptide repeat
TPR_11	PF13414	260 - 301	1.2e-06	TPR repeat
TPR_1	PF00515	527 - 558	8.2e-07	Tetratricopeptide repeat
Thioredoxin	PF00085	629 - 712	7.7e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42580 AT3G58620 AT3G58620
malus_domestica	MD09G1238500.v1.1
prunus_persica	Prupe.3G121600_v2.0.a1 Prupe.3G121600_v2.0.a1
pyrus_communis	pycom09g15720
rosa_chinensis	RchiOBHm_Chr2g0129261
rosa_laevigata	RLG00000019069
rosa_multiflora	Rmu_sc0005230.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034740 Rroxscaffold_2G00114720
rosa_rugosa	Rorug02G0285900
rosa_samantha	Rh2AG337700 Rh2BG345500 Rh2CG325100 Rh2DG363000
rosa_wichuraiana	Rw2G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	2 cut(s)	194, 356
AccI	GTMKAC	1 cut(s)	280
AccII	CGCG	3 cut(s)	367, 834, 896
AccIII	TCCGGA	1 cut(s)	850
AclI	AACGTT	1 cut(s)	434
AclWI	GGATC	3 cut(s)	261, 345, 749
AcoI	YGGCCR	2 cut(s)	637, 909
AcsI	RAATTY	2 cut(s)	2015, 2091
AcuI	CTGAAG	1 cut(s)	1545
AcyI	GRCGYC	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	1919
AfaI	GTAC	4 cut(s)	358, 460, 791, 1341
AfiI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1834
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	6 cut(s)	155, 723, 952, 1356, 1800, 1915
AleI	CACNNNNGTG	1 cut(s)	527
Alw21I	GWGCWC	2 cut(s)	120, 227
Alw26I	GTCTC	5 cut(s)	145, 316, 403, 852, 1767
AlwI	GGATC	3 cut(s)	261, 345, 749
Ama87I	CYCGRG	1 cut(s)	1806
Aor13HI	TCCGGA	1 cut(s)	850
AoxI	GGCC	5 cut(s)	637, 799, 909, 1353, 1549
ApaI	GGGCCC	1 cut(s)	1357
ApeKI	GCWGC	4 cut(s)	860, 1160, 1397, 1901
ApoI	RAATTY	2 cut(s)	2015, 2091
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	1 cut(s)	1794
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	4 cut(s)	197, 836, 898, 970
AspS9I	GGNCC	7 cut(s)	159, 407, 949, 1353, 1354, 1549, 2125
AsuC2I	CCSGG	5 cut(s)	33, 463, 559, 1041, 1770
AsuHPI	GGTGA	8 cut(s)	126, 430, 778, 1139, 1790, 1874, 1905, 2117
AsuII	TTCGAA	2 cut(s)	665, 686
AsuNHI	GCTAGC	1 cut(s)	1006
AvaI	CYCGRG	1 cut(s)	1806
AvaII	GGWCC	4 cut(s)	159, 407, 949, 2125
BaeGI	GKGCMC	1 cut(s)	1357
BaeI	ACNNNNGTAYC	4 cut(s)	442, 475, 1434, 1467
BanI	GGYRCC	2 cut(s)	194, 356
BanII	GRGCYC	5 cut(s)	120, 134, 227, 329, 1357
BarI	GAAGNNNNNNTAC	2 cut(s)	1323, 1355
BbsI	GAAGAC	1 cut(s)	1644
Bbv12I	GWGCWC	2 cut(s)	120, 227
BbvCI	CCTCAGC	1 cut(s)	1191
BbvI	GCAGC	4 cut(s)	847, 1172, 1409, 1888
BccI	CCATC	6 cut(s)	1035, 1262, 1556, 1716, 2014, 2116
BceAI	ACGGC	5 cut(s)	187, 289, 397, 652, 992
BciT130I	CCWGG	6 cut(s)	157, 725, 954, 1358, 1802, 1917
BcnI	CCSGG	5 cut(s)	33, 463, 559, 1041, 1770
BcoDI	GTCTC	5 cut(s)	145, 316, 403, 852, 1767
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	3 cut(s)	681, 1007, 2173
BfmI	CTRYAG	1 cut(s)	1401
BfoI	RGCGCY	1 cut(s)	198
BglII	AGATCT	1 cut(s)	2072
BlpI	GCTNAGC	1 cut(s)	2044
Bme18I	GGWCC	4 cut(s)	159, 407, 949, 2125
BmeT110I	CYCGRG	1 cut(s)	1806
BmgT120I	GGNCC	7 cut(s)	159, 407, 949, 1353, 1354, 1549, 2125
BmiI	GGNNCC	5 cut(s)	196, 358, 951, 1355, 1567
BmsI	GCATC	9 cut(s)	394, 664, 979, 1102, 1102, 1147, 1211, 1234, 1955
BmtI	GCTAGC	1 cut(s)	1010
BpiI	GAAGAC	1 cut(s)	1644
BpmI	CTGGAG	2 cut(s)	199, 1106
Bpu10I	CCTNAGC	2 cut(s)	1145, 1191
Bpu1102I	GCTNAGC	1 cut(s)	2044
Bpu14I	TTCGAA	2 cut(s)	665, 686
BpuEI	CTTGAG	4 cut(s)	1473, 1538, 1640, 1774
BpuMI	CCSGG	5 cut(s)	33, 463, 559, 1041, 1770
Bsa29I	ATCGAT	1 cut(s)	1422
BsaBI	GATNNNNATC	1 cut(s)	2005
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	9 cut(s)	462, 640, 723, 912, 952, 1206, 1356, 1768, 1828
BsaWI	WCCGGW	4 cut(s)	230, 353, 850, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1834
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	3 cut(s)	216, 1089, 2140
Bse3DI	GCAATG	4 cut(s)	85, 747, 1438, 1964
Bse8I	GATNNNNATC	1 cut(s)	2005
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	6 cut(s)	157, 725, 954, 1358, 1802, 1917
BseCI	ATCGAT	1 cut(s)	1422
BseDI	CCNNGG	9 cut(s)	462, 640, 723, 912, 952, 1206, 1356, 1768, 1828
BseGI	GGATG	6 cut(s)	679, 1162, 1202, 1254, 1946, 2035
BseJI	GATNNNNATC	1 cut(s)	2005
BseLI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1834
BseMI	GCAATG	4 cut(s)	85, 747, 1438, 1964
BseMII	CTCAG	5 cut(s)	81, 177, 1053, 1205, 2052
BseNI	ACTGG	3 cut(s)	216, 1089, 2140
BseRI	GAGGAG	5 cut(s)	304, 776, 947, 1771, 2051
BseSI	GKGCMC	1 cut(s)	1357
BseXI	GCAGC	4 cut(s)	847, 1172, 1409, 1888
BseYI	CCCAGC	5 cut(s)	252, 256, 536, 776, 898
BsgI	GTGCAG	1 cut(s)	1516
Bsh1236I	CGCG	3 cut(s)	367, 834, 896
BshFI	GGCC	5 cut(s)	639, 801, 911, 1355, 1551
BshNI	GGYRCC	2 cut(s)	194, 356
BshVI	ATCGAT	1 cut(s)	1422
BsiHKAI	GWGCWC	2 cut(s)	120, 227
BsiHKCI	CYCGRG	1 cut(s)	1806
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1834
BsmAI	GTCTC	5 cut(s)	145, 316, 403, 852, 1767
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	706
BsmI	GAATGC	3 cut(s)	1370, 1393, 1711
BsnI	GGCC	5 cut(s)	639, 801, 911, 1355, 1551
Bso31I	GGTCTC	1 cut(s)	403
BsoBI	CYCGRG	1 cut(s)	1806
Bsp119I	TTCGAA	2 cut(s)	665, 686
Bsp120I	GGGCCC	1 cut(s)	1353
Bsp1286I	GDGCHC	5 cut(s)	120, 134, 227, 329, 1357
Bsp13I	TCCGGA	1 cut(s)	850
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498, 2072
Bsp1720I	GCTNAGC	1 cut(s)	2044
BspANI	GGCC	5 cut(s)	639, 801, 911, 1355, 1551
BspCNI	CTCAG	5 cut(s)	80, 176, 1054, 1204, 2053
BspDI	ATCGAT	1 cut(s)	1422
BspEI	TCCGGA	1 cut(s)	850
BspFNI	CGCG	3 cut(s)	367, 834, 896
BspLI	GGNNCC	5 cut(s)	196, 358, 951, 1355, 1567
BspOI	GCTAGC	1 cut(s)	1010
BspPI	GGATC	3 cut(s)	261, 345, 749
BspQI	GCTCTTC	1 cut(s)	232
BspT104I	TTCGAA	2 cut(s)	665, 686
BspT107I	GGYRCC	2 cut(s)	194, 356
BspTNI	GGTCTC	1 cut(s)	403
BsrDI	GCAATG	4 cut(s)	85, 747, 1438, 1964
BsrFI	RCCGGY	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	3 cut(s)	216, 1089, 2140
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	9 cut(s)	462, 640, 723, 912, 952, 1206, 1356, 1768, 1828
BssMI	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498, 2072
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	1206
Bst2UI	CCWGG	6 cut(s)	157, 725, 954, 1358, 1802, 1917
Bst4CI	ACNGT	5 cut(s)	310, 455, 529, 644, 1059
Bst6I	CTCTTC	2 cut(s)	232, 1800
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	549
BstAUI	TGTACA	1 cut(s)	789
BstBI	TTCGAA	2 cut(s)	665, 686
BstC8I	GCNNGC	7 cut(s)	302, 595, 909, 1008, 1301, 1322, 1531
BstDSI	CCRYGG	2 cut(s)	640, 1828
BstF5I	GGATG	6 cut(s)	679, 1162, 1202, 1254, 1946, 2035
BstFNI	CGCG	3 cut(s)	367, 834, 896
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	4 cut(s)	197, 836, 898, 970
BstKTI	GATC	9 cut(s)	124, 269, 353, 395, 420, 757, 832, 1501, 2075
BstMAI	GTCTC	5 cut(s)	145, 316, 403, 852, 1767
BstMBI	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498, 2072
BstNI	CCWGG	6 cut(s)	157, 725, 954, 1358, 1802, 1917
BstNSI	RCATGY	1 cut(s)	1324
BstSFI	CTRYAG	1 cut(s)	1401
BstSLI	GKGCMC	1 cut(s)	1357
BstUI	CGCG	3 cut(s)	367, 834, 896
BstV1I	GCAGC	4 cut(s)	847, 1172, 1409, 1888
BstV2I	GAAGAC	1 cut(s)	1644
BstX2I	RGATCY	2 cut(s)	266, 2072
BstXI	CCANNNNNNTGG	1 cut(s)	1171
BstYI	RGATCY	2 cut(s)	266, 2072
Bsu15I	ATCGAT	1 cut(s)	1422
BsuRI	GGCC	5 cut(s)	639, 801, 911, 1355, 1551
BsuTUI	ATCGAT	1 cut(s)	1422
BtgI	CCRYGG	2 cut(s)	640, 1828
BtsCI	GGATG	6 cut(s)	679, 1162, 1202, 1254, 1946, 2035
BtsI	GCAGTG	2 cut(s)	1533, 1740
BtsIMutI	CAGTG	4 cut(s)	171, 1082, 1533, 1740
Cac8I	GCNNGC	7 cut(s)	302, 595, 909, 1008, 1301, 1322, 1531
CfoI	GCGC	4 cut(s)	197, 836, 898, 970
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	7 cut(s)	159, 407, 949, 1353, 1354, 1549, 2125
ClaI	ATCGAT	1 cut(s)	1422
CpoI	CGGWCCG	1 cut(s)	407
CseI	GACGC	1 cut(s)	334
CsiI	ACCWGGT	1 cut(s)	1915
Csp6I	GTAC	4 cut(s)	357, 459, 790, 1340
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CspI	CGGWCCG	1 cut(s)	407
CviAII	CATG	2 cut(s)	1321, 1847
CviQI	GTAC	4 cut(s)	357, 459, 790, 1340
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	9 cut(s)	123, 268, 352, 394, 419, 756, 831, 1500, 2074
DpnII	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498, 2072
DraI	TTTAAA	2 cut(s)	1887, 1897
DraIII	CACNNNGTG	1 cut(s)	1919
EaeI	YGGCCR	2 cut(s)	637, 909
Eam1104I	CTCTTC	2 cut(s)	232, 1800
EarI	CTCTTC	2 cut(s)	232, 1800
EciI	GGCGGA	2 cut(s)	391, 2117
Ecl136II	GAGCTC	2 cut(s)	118, 225
Eco130I	CCWWGG	1 cut(s)	1206
Eco24I	GRGCYC	5 cut(s)	120, 134, 227, 329, 1357
Eco31I	GGTCTC	1 cut(s)	403
Eco32I	GATATC	1 cut(s)	2003
Eco47I	GGWCC	4 cut(s)	159, 407, 949, 2125
Eco53kI	GAGCTC	2 cut(s)	118, 225
Eco57I	CTGAAG	1 cut(s)	1545
Eco88I	CYCGRG	1 cut(s)	1806
EcoICRI	GAGCTC	2 cut(s)	118, 225
EcoO109I	RGGNCCY	3 cut(s)	159, 1353, 1549
EcoRII	CCWGG	6 cut(s)	155, 723, 952, 1356, 1800, 1915
EcoRV	GATATC	1 cut(s)	2003
EcoT14I	CCWWGG	1 cut(s)	1206
EcoT38I	GRGCYC	5 cut(s)	120, 134, 227, 329, 1357
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	1206
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	2 cut(s)	1324, 1850
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	2 cut(s)	1320, 1846
FauI	CCCGC	1 cut(s)	1031
FblI	GTMKAC	1 cut(s)	280
FokI	GGATG	6 cut(s)	686, 1169, 1189, 1241, 1933, 2042
FriOI	GRGCYC	5 cut(s)	120, 134, 227, 329, 1357
FspBI	CTAG	3 cut(s)	681, 1007, 2173
GlaI	GCGC	4 cut(s)	196, 835, 897, 969
GsaI	CCCAGC	5 cut(s)	256, 260, 540, 780, 902
GsuI	CTGGAG	2 cut(s)	199, 1106
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	639, 801, 911, 1355, 1551
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	4 cut(s)	197, 836, 898, 970
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	1324, 1850
Hin6I	GCGC	4 cut(s)	195, 834, 896, 968
HinP1I	GCGC	4 cut(s)	195, 834, 896, 968
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	3 cut(s)	1121, 1332, 1610
HpaI	GTTAAC	1 cut(s)	178
HphI	GGTGA	8 cut(s)	126, 430, 778, 1139, 1790, 1874, 1905, 2117
Hpy166II	GTNNAC	4 cut(s)	169, 178, 281, 438
Hpy188III	TCNNGA	7 cut(s)	49, 576, 758, 851, 1512, 1657, 1753
Hpy8I	GTNNAC	4 cut(s)	169, 178, 281, 438
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	8 cut(s)	564, 766, 1299, 1371, 1402, 1509, 1686, 1694
HpyCH4III	ACNGT	5 cut(s)	310, 455, 529, 644, 1059
HpyCH4IV	ACGT	1 cut(s)	434
HpySE526I	ACGT	1 cut(s)	434
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	1324, 1850
HspAI	GCGC	4 cut(s)	195, 834, 896, 968
KasI	GGCGCC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	850
KpnI	GGTACC	1 cut(s)	360
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498, 2072
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	4 cut(s)	51, 218, 382, 1233
Lsp1109I	GCAGC	4 cut(s)	847, 1172, 1409, 1888
LweI	GCATC	9 cut(s)	394, 664, 979, 1102, 1102, 1147, 1211, 1234, 1955
MabI	ACCWGGT	1 cut(s)	1915
MaeI	CTAG	3 cut(s)	681, 1007, 2173
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	7 cut(s)	62, 70, 449, 872, 1080, 1441, 1493
MalI	GATC	9 cut(s)	123, 268, 352, 394, 419, 756, 831, 1500, 2074
MboI	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498, 2072
MflI	RGATCY	2 cut(s)	266, 2072
MhlI	GDGCHC	5 cut(s)	120, 134, 227, 329, 1357
MluCI	AATT	9 cut(s)	370, 505, 564, 579, 1282, 1570, 1882, 2015, 2091
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	6 cut(s)	35, 46, 59, 728, 1190, 2147
MmeI	TCCRAC	3 cut(s)	294, 927, 2105
MroI	TCCGGA	1 cut(s)	850
MroXI	GAANNNNTTC	1 cut(s)	1794
MseI	TTAA	6 cut(s)	177, 732, 1886, 1896, 2013, 2022
MslI	CAYNNNNRTG	3 cut(s)	527, 1169, 1985
MspA1I	CMGCKG	3 cut(s)	256, 540, 1400
Mva1269I	GAATGC	3 cut(s)	1370, 1393, 1711
MvaI	CCWGG	6 cut(s)	157, 725, 954, 1358, 1802, 1917
MvnI	CGCG	3 cut(s)	367, 834, 896
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	5 cut(s)	33, 463, 559, 1041, 1770
NdeII	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498, 2072
NheI	GCTAGC	1 cut(s)	1006
NlaIII	CATG	2 cut(s)	1324, 1850
NlaIV	GGNNCC	5 cut(s)	196, 358, 951, 1355, 1567
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	3 cut(s)	62, 70, 1080
NspI	RCATGY	1 cut(s)	1324
NspV	TTCGAA	2 cut(s)	665, 686
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	1324
PaeR7I	CTCGAG	1 cut(s)	1806
PciSI	GCTCTTC	1 cut(s)	232
PctI	GAATGC	3 cut(s)	1370, 1393, 1711
PdmI	GAANNNNTTC	1 cut(s)	1794
PfeI	GAWTC	4 cut(s)	1151, 1250, 1660, 1790
PflFI	GACNNNGTC	1 cut(s)	68
PfoI	TCCNGGA	2 cut(s)	557, 1039
PleI	GAGTC	6 cut(s)	35, 46, 59, 727, 1189, 2147
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	6 cut(s)	35, 46, 59, 727, 1189, 2147
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	2 cut(s)	120, 227
Psp1406I	AACGTT	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	6 cut(s)	155, 723, 952, 1356, 1800, 1915
PspFI	CCCAGC	5 cut(s)	252, 256, 536, 776, 898
PspGI	CCWGG	6 cut(s)	155, 723, 952, 1356, 1800, 1915
PspN4I	GGNNCC	5 cut(s)	196, 358, 951, 1355, 1567
PspOMI	GGGCCC	1 cut(s)	1353
PspPI	GGNCC	7 cut(s)	159, 407, 949, 1353, 1354, 1549, 2125
PspPPI	RGGWCCY	1 cut(s)	159
PspXI	VCTCGAGB	1 cut(s)	1806
PsuI	RGATCY	2 cut(s)	266, 2072
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	2 cut(s)	256, 1400
RsaI	GTAC	4 cut(s)	358, 460, 791, 1341
RsaNI	GTAC	4 cut(s)	357, 459, 790, 1340
RseI	CAYNNNNRTG	3 cut(s)	527, 1169, 1985
Rsr2I	CGGWCCG	1 cut(s)	407
RsrII	CGGWCCG	1 cut(s)	407
SacI	GAGCTC	2 cut(s)	120, 227
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	6 cut(s)	177, 732, 1886, 1896, 2013, 2022
Sau3AI	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498, 2072
Sau96I	GGNCC	7 cut(s)	159, 407, 949, 1353, 1354, 1549, 2125
SchI	GAGTC	6 cut(s)	35, 46, 59, 728, 1190, 2147
SduI	GDGCHC	5 cut(s)	120, 134, 227, 329, 1357
SexAI	ACCWGGT	1 cut(s)	1915
SfaNI	GCATC	9 cut(s)	394, 664, 979, 1102, 1102, 1147, 1211, 1234, 1955
SfcI	CTRYAG	1 cut(s)	1401
SfoI	GGCGCC	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	1806
SfuI	TTCGAA	2 cut(s)	665, 686
SgrAI	CRCCGGYG	1 cut(s)	440
SinI	GGWCC	4 cut(s)	159, 407, 949, 2125
SlaI	CTCGAG	1 cut(s)	1806
SmiI	ATTTAAAT	1 cut(s)	1887
SmiMI	CAYNNNNRTG	3 cut(s)	527, 1169, 1985
SmlI	CTYRAG	5 cut(s)	1488, 1553, 1655, 1753, 1806
SmoI	CTYRAG	5 cut(s)	1488, 1553, 1655, 1753, 1806
SpeI	ACTAGT	1 cut(s)	680
SphI	GCATGC	1 cut(s)	1324
Sse9I	AATT	9 cut(s)	370, 505, 564, 579, 1282, 1570, 1882, 2015, 2091
SspDI	GGCGCC	1 cut(s)	194
SspI	AATATT	1 cut(s)	1459
SspMI	CTAG	3 cut(s)	681, 1007, 2173
SstI	GAGCTC	2 cut(s)	120, 227
StyI	CCWWGG	1 cut(s)	1206
SwaI	ATTTAAAT	1 cut(s)	1887
TaaI	ACNGT	5 cut(s)	310, 455, 529, 644, 1059
TaiI	ACGT	1 cut(s)	437
TaqII	GACCGA	1 cut(s)	385
TasI	AATT	9 cut(s)	370, 505, 564, 579, 1282, 1570, 1882, 2015, 2091
TatI	WGTACW	2 cut(s)	789, 1339
TauI	GCSGC	7 cut(s)	200, 367, 543, 630, 884, 887, 907
TfiI	GAWTC	4 cut(s)	1151, 1250, 1660, 1790
Tru1I	TTAA	6 cut(s)	177, 732, 1886, 1896, 2013, 2022
Tru9I	TTAA	6 cut(s)	177, 732, 1886, 1896, 2013, 2022
TscAI	CASTG	4 cut(s)	171, 1089, 1540, 1740
TseFI	GTSAC	3 cut(s)	62, 70, 1080
TseI	GCWGC	4 cut(s)	860, 1160, 1397, 1901
Tsp45I	GTSAC	3 cut(s)	62, 70, 1080
TspDTI	ATGAA	4 cut(s)	498, 1832, 1922, 1969
TspGWI	ACGGA	2 cut(s)	50, 1817
TspRI	CASTG	4 cut(s)	171, 1089, 1540, 1740
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	4 cut(s)	159, 407, 949, 2125
XapI	RAATTY	2 cut(s)	2015, 2091
XceI	RCATGY	1 cut(s)	1324
XhoI	CTCGAG	1 cut(s)	1806
XmiI	GTMKAC	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	1794
XspI	CTAG	3 cut(s)	681, 1007, 2173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.