Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012780

Physical Location & Seq

Genomic Coordinates Forward (+)

51310049 .. 51315275

Gene Structure 5227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGCCCCAGACAGGCAAATCCACCCAAGAACCGGGTTTCGACTCGCTCCCGACTCGCTTCCGTGACTCAGTCACTTGCAATGACGACCATAATAAGAACAAGCCCGATTTCAAAGAGCTCGATCTGGGCGGCTCACCCGTCTCGCCCTTGATGACCAGGACCTCAGTGAACCGCGTTAACAACAATGGAGGTGGCGCCGCCACTACTTCCAGCTCCAGTTCGAGCTCTTCCGGTTCGGTTTCCAGCAAAACCCAGCTGGGGAGAAGATCCGACGGCAGTAGACCCAACAACCACTCCGGCGAGCTAACTGTCTCCTCGGAAATGAGCCCCAGAGCTTCCGAGAGCGCCCGATCCGGTACCACGCCGCGTAATTGGAAGCCGGAGCATCGGAGATCGGTCTCCGCCGGACCGCCGTTGATCTACTCCGGCAAAACGTTCACCGGCGGTAGTAACGTTAGTGCCGGGGGTAGCGTTGGTAATGCTTGTGGAAATGTAGCAACCAATAATTCATCTTCAACCTCCACAACTGTGTTCCCCAGCGGCAACATATGCCCTTCCGGGAAAATTACGAAGTCTGGAATTGTGTGGAGAGCCAGCAATAAGACTGATGTTTTGGGTTCGGGGTGCGGCAACTACGGCCACGGTAGCATAGTTCGAGGGGTTTCGAAATCGGATGCTACTGGTTCGAATGTGGGTGGCAACTTACAGATTGGTGGGGAGTCTGTGGCGGTTAAGAGGGCAATGGGGAACTCTGATCCAGAGGAGGTGAAGAAGGCTGGGAATGAGATGTACAGGAAAGGCCATTTTGTGGAGGCATTGACAATGTATGATCGCGCTGTGTCTTTGTCTCCGGACAATGCTGCTTACCGGAGTAACAGGGCGGCGGCATTGACCGCGCTGGGGCGGCTGGCCGAGGCTGTGAGGGAGTGTGAGGAGGCTGTCAGGTTGGACCCTGGTTATGGGAGGGCGCATCAACGGCTTGGCTCGCTTTATCTTCGTTTTGGGCTAGCGGAAAATGCCTCCCACCACCTCTCATTTCCTGGACAAAGGCCAGAACAGTCTGAGTTGCAGAAGTTGAAGTCACTGGAGAAGCATCTGAAACAATGTTCAGATGCCCGTAAGCTTGGTGATTGGAAGAATGTGCTAAGGGAATCGGATGCAGCCATAGAAATGGGACTGGAGTCCTCCCCTCAGCTTGTGGCGTCCAAGGCAGAAGCTCTATTGAAGCTCCATAAACTCGAAGATGCAGAATCCATCCTATCAAACATACCTAAGTTTGAAAATTACCCTTCTTCCTGCTTGCAAACCAAGTTATTTGGCATGCTTGTTGAAGCTTATGTACTCTATGTAAGGGCCCAGGTTGAAATGGCATTCGGAAGGTTTGAGAATGCAGTAGCAGCTGTAGAGAAGGCTGGTGTAATCGATTACAGCAATGTTGAAGTTACAAGGGTATCAAATATTGTGAAAATGGTTGCGAAAGCTCGTTCTCAAGGTAACGATCTTTTTAGCTCTGGAAGGTTTGCTGAAGCCTGCGCTGCTTATGGGGAGGGTCTCAAGTATGATAGTTCCAATTCTGTTCTATACTGCAATAGAGCAGTTTGCTGGTCTAAGCTTGGACAATGGGAACAGTCTGTTGAAGACTGCAACCAAGCCCTCAAGATTCAGCCTCATTACACCAAAGCCCTTCTAAGAAGGGCTGTGTCGAATGCAAAGTTAGAACGATGGGCAGAGGCAGTGAGAGATTATGAGGTCTTGAGGAGGGAACTCCCCGGAGACAATGAGGTTGCTGAATCTCTTCACCAGGCTCGAGTGGCATTGAAGAAGTTCCGTGGAGAGGAACTTCATCATGTAAAGTCTGGCGGTGAAGTGGAAGAAGTTTCTAATTTAAATAAGTTCAAAGCTGCAATATCATCACCTGGTGTTTCTGTCATTCATTTCAAAGTTGCATCCAATGAGCAATGTGAAGAACTATCCCCATTCATAAATATGCTTTGCGTTAGATATCCATCTGTTAAATTTTTTAAGGTAGGTGATTTATTTGTTTATGTGTTCACCCATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_6 TPR_8 Thioredoxin

Protein Analysis

687

Amino Acids

74.34

Weight (kDa)

8.95

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	259 - 320	1.5e-07	Tetratricopeptide repeat
TPR_11	PF13414	260 - 301	8.7e-06	TPR repeat
TPR_1	PF00515	527 - 558	1.5e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42580 AT3G58620 AT3G58620
malus_domestica	MD09G1238500.v1.1
prunus_persica	Prupe.3G121600_v2.0.a1 Prupe.3G121600_v2.0.a1
pyrus_communis	pycom09g15720
rosa_chinensis	RchiOBHm_Chr2g0129261
rosa_laevigata	RLG00000019069
rosa_multiflora	Rmu_sc0005230.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034740 Rroxscaffold_2G00114720
rosa_rugosa	Rorug02G0285900
rosa_samantha	Rh2AG337700 Rh2BG345500 Rh2CG325100 Rh2DG363000
rosa_wichuraiana	Rw2G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	2 cut(s)	194, 356
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	280
AccII	CGCG	4 cut(s)	174, 367, 834, 896
AccIII	TCCGGA	1 cut(s)	850
AclI	AACGTT	2 cut(s)	434, 453
AclWI	GGATC	3 cut(s)	261, 345, 749
AcoI	YGGCCR	2 cut(s)	637, 909
AcsI	RAATTY	1 cut(s)	2015
AcuI	CTGAAG	1 cut(s)	1545
AcyI	GRCGYC	2 cut(s)	195, 1202
AdeI	CACNNNGTG	1 cut(s)	1919
AfaI	GTAC	3 cut(s)	358, 791, 1341
AfiI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1834
AjnI	CCWGG	6 cut(s)	155, 952, 1039, 1356, 1800, 1915
AleI	CACNNNNGTG	1 cut(s)	527
Alw21I	GWGCWC	2 cut(s)	120, 227
Alw26I	GTCTC	6 cut(s)	145, 316, 403, 852, 1556, 1767
AlwI	GGATC	3 cut(s)	261, 345, 749
Ama87I	CYCGRG	1 cut(s)	1806
Aor13HI	TCCGGA	1 cut(s)	850
AoxI	GGCC	5 cut(s)	637, 799, 909, 1049, 1353
ApaI	GGGCCC	1 cut(s)	1357
ApeKI	GCWGC	5 cut(s)	860, 1160, 1397, 1535, 1901
ApoI	RAATTY	1 cut(s)	2015
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	2 cut(s)	1794, 1823
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	6 cut(s)	197, 347, 836, 898, 970, 1535
AspS9I	GGNCC	5 cut(s)	159, 407, 949, 1353, 1354
AsuC2I	CCSGG	4 cut(s)	33, 463, 559, 1770
AsuHPI	GGTGA	9 cut(s)	126, 430, 778, 1139, 1790, 1874, 1905, 2042, 2044
AsuII	TTCGAA	2 cut(s)	665, 686
AsuNHI	GCTAGC	1 cut(s)	1006
AvaI	CYCGRG	1 cut(s)	1806
AvaII	GGWCC	3 cut(s)	159, 407, 949
BaeGI	GKGCMC	1 cut(s)	1357
BaeI	ACNNNNGTAYC	2 cut(s)	1434, 1467
BanI	GGYRCC	2 cut(s)	194, 356
BanII	GRGCYC	4 cut(s)	120, 227, 329, 1357
BarI	GAAGNNNNNNTAC	2 cut(s)	1323, 1355
BbsI	GAAGAC	1 cut(s)	1644
Bbv12I	GWGCWC	2 cut(s)	120, 227
BbvCI	CCTCAGC	1 cut(s)	1191
BbvI	GCAGC	5 cut(s)	847, 1172, 1409, 1522, 1888
BccI	CCATC	3 cut(s)	1262, 1716, 2014
BceAI	ACGGC	4 cut(s)	289, 397, 652, 992
BciT130I	CCWGG	6 cut(s)	157, 954, 1041, 1358, 1802, 1917
BcnI	CCSGG	4 cut(s)	33, 463, 559, 1770
BcoDI	GTCTC	6 cut(s)	145, 316, 403, 852, 1556, 1767
BfaI	CTAG	1 cut(s)	1007
BfmI	CTRYAG	1 cut(s)	1401
BfoI	RGCGCY	2 cut(s)	198, 348
Bme18I	GGWCC	3 cut(s)	159, 407, 949
BmeT110I	CYCGRG	1 cut(s)	1806
BmgT120I	GGNCC	5 cut(s)	159, 407, 949, 1353, 1354
BmiI	GGNNCC	4 cut(s)	196, 358, 951, 1355
BmsI	GCATC	8 cut(s)	394, 664, 979, 1102, 1102, 1147, 1234, 1955
BmtI	GCTAGC	1 cut(s)	1010
BoxI	GACNNNNGTC	1 cut(s)	1180
BpiI	GAAGAC	1 cut(s)	1644
BpmI	CTGGAG	3 cut(s)	199, 1106, 1199
Bpu10I	CCTNAGC	2 cut(s)	1145, 1191
Bpu14I	TTCGAA	2 cut(s)	665, 686
BpuEI	CTTGAG	4 cut(s)	1473, 1538, 1640, 1774
BpuMI	CCSGG	4 cut(s)	33, 463, 559, 1770
Bsa29I	ATCGAT	1 cut(s)	1422
BsaBI	GATNNNNATC	1 cut(s)	2005
BsaHI	GRCGYC	2 cut(s)	195, 1202
BsaI	GGTCTC	2 cut(s)	403, 1556
BsaJI	CCNNGG	9 cut(s)	315, 462, 640, 912, 952, 1206, 1356, 1768, 1828
BsaWI	WCCGGW	4 cut(s)	230, 353, 850, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1834
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	4 cut(s)	216, 685, 1089, 1182
Bse3DI	GCAATG	4 cut(s)	85, 747, 1438, 1964
Bse8I	GATNNNNATC	1 cut(s)	2005
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	6 cut(s)	157, 954, 1041, 1358, 1802, 1917
BseCI	ATCGAT	1 cut(s)	1422
BseDI	CCNNGG	9 cut(s)	315, 462, 640, 912, 952, 1206, 1356, 1768, 1828
BseGI	GGATG	4 cut(s)	679, 1162, 1254, 1946
BseJI	GATNNNNATC	1 cut(s)	2005
BseLI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1834
BseMI	GCAATG	4 cut(s)	85, 747, 1438, 1964
BseMII	CTCAG	4 cut(s)	81, 177, 1053, 1205
BseNI	ACTGG	4 cut(s)	216, 685, 1089, 1182
BseRI	GAGGAG	4 cut(s)	304, 776, 947, 1771
BseSI	GKGCMC	1 cut(s)	1357
BseXI	GCAGC	5 cut(s)	847, 1172, 1409, 1522, 1888
BseYI	CCCAGC	5 cut(s)	252, 256, 536, 776, 898
Bsh1236I	CGCG	4 cut(s)	174, 367, 834, 896
BshFI	GGCC	5 cut(s)	639, 801, 911, 1051, 1355
BshNI	GGYRCC	2 cut(s)	194, 356
BshVI	ATCGAT	1 cut(s)	1422
BsiHKAI	GWGCWC	2 cut(s)	120, 227
BsiHKCI	CYCGRG	1 cut(s)	1806
BslFI	GGGAC	1 cut(s)	1188
BslI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1834
BsmAI	GTCTC	6 cut(s)	145, 316, 403, 852, 1556, 1767
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	1188
BsmI	GAATGC	3 cut(s)	1370, 1393, 1711
BsnI	GGCC	5 cut(s)	639, 801, 911, 1051, 1355
Bso31I	GGTCTC	2 cut(s)	403, 1556
BsoBI	CYCGRG	1 cut(s)	1806
Bsp119I	TTCGAA	2 cut(s)	665, 686
Bsp120I	GGGCCC	1 cut(s)	1353
Bsp1286I	GDGCHC	4 cut(s)	120, 227, 329, 1357
Bsp13I	TCCGGA	1 cut(s)	850
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	8 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498
BspANI	GGCC	5 cut(s)	639, 801, 911, 1051, 1355
BspCNI	CTCAG	4 cut(s)	80, 176, 1054, 1204
BspDI	ATCGAT	1 cut(s)	1422
BspEI	TCCGGA	1 cut(s)	850
BspFNI	CGCG	4 cut(s)	174, 367, 834, 896
BspLI	GGNNCC	4 cut(s)	196, 358, 951, 1355
BspOI	GCTAGC	1 cut(s)	1010
BspPI	GGATC	3 cut(s)	261, 345, 749
BspQI	GCTCTTC	1 cut(s)	232
BspT104I	TTCGAA	2 cut(s)	665, 686
BspT107I	GGYRCC	2 cut(s)	194, 356
BspTNI	GGTCTC	2 cut(s)	403, 1556
BsrDI	GCAATG	4 cut(s)	85, 747, 1438, 1964
BsrFI	RCCGGY	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	4 cut(s)	216, 685, 1089, 1182
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	9 cut(s)	315, 462, 640, 912, 952, 1206, 1356, 1768, 1828
BssMI	GATC	8 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498
BssNI	GRCGYC	2 cut(s)	195, 1202
BssT1I	CCWWGG	1 cut(s)	1206
Bst2UI	CCWGG	6 cut(s)	157, 954, 1041, 1358, 1802, 1917
Bst4CI	ACNGT	5 cut(s)	310, 529, 644, 1059, 1629
Bst6I	CTCTTC	2 cut(s)	232, 1800
BstACI	GRCGYC	2 cut(s)	195, 1202
BstAPI	GCANNNNNTGC	1 cut(s)	549
BstAUI	TGTACA	1 cut(s)	789
BstBI	TTCGAA	2 cut(s)	665, 686
BstC8I	GCNNGC	8 cut(s)	302, 595, 909, 986, 1008, 1301, 1322, 1531
BstDEI	CTNAG	8 cut(s)	67, 163, 1062, 1145, 1191, 1272, 1608, 1688
BstDSI	CCRYGG	2 cut(s)	640, 1828
BstF5I	GGATG	4 cut(s)	679, 1162, 1254, 1946
BstFNI	CGCG	4 cut(s)	174, 367, 834, 896
BstH2I	RGCGCY	2 cut(s)	198, 348
BstHHI	GCGC	6 cut(s)	197, 347, 836, 898, 970, 1535
BstKTI	GATC	8 cut(s)	124, 269, 353, 395, 420, 757, 832, 1501
BstMAI	GTCTC	6 cut(s)	145, 316, 403, 852, 1556, 1767
BstMBI	GATC	8 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498
BstNI	CCWGG	6 cut(s)	157, 954, 1041, 1358, 1802, 1917
BstNSI	RCATGY	1 cut(s)	1324
BstPAI	GACNNNNGTC	1 cut(s)	1180
BstSFI	CTRYAG	1 cut(s)	1401
BstSLI	GKGCMC	1 cut(s)	1357
BstUI	CGCG	4 cut(s)	174, 367, 834, 896
BstV1I	GCAGC	5 cut(s)	847, 1172, 1409, 1522, 1888
BstV2I	GAAGAC	1 cut(s)	1644
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	1171
BstYI	RGATCY	1 cut(s)	266
Bsu15I	ATCGAT	1 cut(s)	1422
BsuRI	GGCC	5 cut(s)	639, 801, 911, 1051, 1355
BsuTUI	ATCGAT	1 cut(s)	1422
BtgI	CCRYGG	2 cut(s)	640, 1828
BtsCI	GGATG	4 cut(s)	679, 1162, 1254, 1946
BtsI	GCAGTG	1 cut(s)	1740
BtsIMutI	CAGTG	3 cut(s)	171, 1082, 1740
Cac8I	GCNNGC	8 cut(s)	302, 595, 909, 986, 1008, 1301, 1322, 1531
CfoI	GCGC	6 cut(s)	197, 347, 836, 898, 970, 1535
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	5 cut(s)	159, 407, 949, 1353, 1354
ClaI	ATCGAT	1 cut(s)	1422
CpoI	CGGWCCG	1 cut(s)	407
CseI	GACGC	1 cut(s)	1191
CsiI	ACCWGGT	1 cut(s)	1915
Csp6I	GTAC	3 cut(s)	357, 790, 1340
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CspI	CGGWCCG	1 cut(s)	407
CviAII	CATG	3 cut(s)	1321, 1847, 2057
CviQI	GTAC	3 cut(s)	357, 790, 1340
DdeI	CTNAG	8 cut(s)	67, 163, 1062, 1145, 1191, 1272, 1608, 1688
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	8 cut(s)	123, 268, 352, 394, 419, 756, 831, 1500
DpnII	GATC	8 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498
DraI	TTTAAA	1 cut(s)	1887
DraIII	CACNNNGTG	1 cut(s)	1919
EaeI	YGGCCR	2 cut(s)	637, 909
Eam1104I	CTCTTC	2 cut(s)	232, 1800
EarI	CTCTTC	2 cut(s)	232, 1800
EciI	GGCGGA	1 cut(s)	391
Ecl136II	GAGCTC	2 cut(s)	118, 225
Eco130I	CCWWGG	1 cut(s)	1206
Eco24I	GRGCYC	4 cut(s)	120, 227, 329, 1357
Eco31I	GGTCTC	2 cut(s)	403, 1556
Eco32I	GATATC	1 cut(s)	2003
Eco47I	GGWCC	3 cut(s)	159, 407, 949
Eco53kI	GAGCTC	2 cut(s)	118, 225
Eco57I	CTGAAG	1 cut(s)	1545
Eco88I	CYCGRG	1 cut(s)	1806
EcoICRI	GAGCTC	2 cut(s)	118, 225
EcoO109I	RGGNCCY	2 cut(s)	159, 1353
EcoRII	CCWGG	6 cut(s)	155, 952, 1039, 1356, 1800, 1915
EcoRV	GATATC	1 cut(s)	2003
EcoT14I	CCWWGG	1 cut(s)	1206
EcoT38I	GRGCYC	4 cut(s)	120, 227, 329, 1357
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	1206
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	3 cut(s)	1324, 1850, 2060
FaqI	GGGAC	1 cut(s)	1188
FatI	CATG	3 cut(s)	1320, 1846, 2056
FauNDI	CATATG	1 cut(s)	548
FblI	GTMKAC	1 cut(s)	280
FokI	GGATG	4 cut(s)	686, 1169, 1241, 1933
FriOI	GRGCYC	4 cut(s)	120, 227, 329, 1357
FspBI	CTAG	1 cut(s)	1007
GlaI	GCGC	6 cut(s)	196, 346, 835, 897, 969, 1534
GsaI	CCCAGC	5 cut(s)	256, 260, 540, 780, 902
GsuI	CTGGAG	3 cut(s)	199, 1106, 1199
HaeII	RGCGCY	2 cut(s)	198, 348
HaeIII	GGCC	5 cut(s)	639, 801, 911, 1051, 1355
HgaI	GACGC	1 cut(s)	1191
HhaI	GCGC	6 cut(s)	197, 347, 836, 898, 970, 1535
Hin1I	GRCGYC	2 cut(s)	195, 1202
Hin1II	CATG	3 cut(s)	1324, 1850, 2060
Hin6I	GCGC	6 cut(s)	195, 345, 834, 896, 968, 1533
HinP1I	GCGC	6 cut(s)	195, 345, 834, 896, 968, 1533
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	3 cut(s)	1121, 1332, 1610
HinfI	GANTC	9 cut(s)	41, 52, 65, 719, 1151, 1181, 1250, 1660, 1790
HpaI	GTTAAC	1 cut(s)	178
HphI	GGTGA	9 cut(s)	126, 430, 778, 1139, 1790, 1874, 1905, 2042, 2044
Hpy166II	GTNNAC	5 cut(s)	169, 178, 281, 438, 2052
Hpy188III	TCNNGA	7 cut(s)	49, 576, 758, 851, 1512, 1657, 1753
Hpy8I	GTNNAC	5 cut(s)	169, 178, 281, 438, 2052
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	8 cut(s)	564, 766, 1299, 1371, 1402, 1509, 1686, 1694
HpyCH4III	ACNGT	5 cut(s)	310, 529, 644, 1059, 1629
HpyCH4IV	ACGT	2 cut(s)	434, 453
HpyF3I	CTNAG	8 cut(s)	67, 163, 1062, 1145, 1191, 1272, 1608, 1688
HpySE526I	ACGT	2 cut(s)	434, 453
Hsp92I	GRCGYC	2 cut(s)	195, 1202
Hsp92II	CATG	3 cut(s)	1324, 1850, 2060
HspAI	GCGC	6 cut(s)	195, 345, 834, 896, 968, 1533
KasI	GGCGCC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	850
KpnI	GGTACC	1 cut(s)	360
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	8 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	4 cut(s)	51, 218, 382, 1233
Lsp1109I	GCAGC	5 cut(s)	847, 1172, 1409, 1522, 1888
LweI	GCATC	8 cut(s)	394, 664, 979, 1102, 1102, 1147, 1234, 1955
MabI	ACCWGGT	1 cut(s)	1915
MaeI	CTAG	1 cut(s)	1007
MaeII	ACGT	2 cut(s)	434, 453
MaeIII	GTNAC	7 cut(s)	62, 70, 449, 872, 1080, 1441, 1493
MalI	GATC	8 cut(s)	123, 268, 352, 394, 419, 756, 831, 1500
MboI	GATC	8 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	4 cut(s)	120, 227, 329, 1357
MluCI	AATT	8 cut(s)	370, 505, 564, 579, 1282, 1570, 1882, 2015
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	5 cut(s)	35, 46, 59, 728, 1190
MmeI	TCCRAC	2 cut(s)	294, 927
MroI	TCCGGA	1 cut(s)	850
MroXI	GAANNNNTTC	2 cut(s)	1794, 1823
MseI	TTAA	5 cut(s)	177, 732, 1886, 2013, 2022
MslI	CAYNNNNRTG	3 cut(s)	527, 1169, 1985
MspA1I	CMGCKG	3 cut(s)	256, 540, 1400
Mva1269I	GAATGC	3 cut(s)	1370, 1393, 1711
MvaI	CCWGG	6 cut(s)	157, 954, 1041, 1358, 1802, 1917
MvnI	CGCG	4 cut(s)	174, 367, 834, 896
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	4 cut(s)	33, 463, 559, 1770
NdeI	CATATG	1 cut(s)	548
NdeII	GATC	8 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498
NheI	GCTAGC	1 cut(s)	1006
NlaIII	CATG	3 cut(s)	1324, 1850, 2060
NlaIV	GGNNCC	4 cut(s)	196, 358, 951, 1355
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	3 cut(s)	62, 70, 1080
NspI	RCATGY	1 cut(s)	1324
NspV	TTCGAA	2 cut(s)	665, 686
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	1324
PaeR7I	CTCGAG	1 cut(s)	1806
PciSI	GCTCTTC	1 cut(s)	232
PctI	GAATGC	3 cut(s)	1370, 1393, 1711
PdmI	GAANNNNTTC	2 cut(s)	1794, 1823
PfeI	GAWTC	4 cut(s)	1151, 1250, 1660, 1790
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	808
PfoI	TCCNGGA	2 cut(s)	557, 1039
PleI	GAGTC	5 cut(s)	35, 46, 59, 727, 1189
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	5 cut(s)	35, 46, 59, 727, 1189
PpuMI	RGGWCCY	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	1180
Psp124BI	GAGCTC	2 cut(s)	120, 227
Psp1406I	AACGTT	2 cut(s)	434, 453
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	6 cut(s)	155, 952, 1039, 1356, 1800, 1915
PspFI	CCCAGC	5 cut(s)	252, 256, 536, 776, 898
PspGI	CCWGG	6 cut(s)	155, 952, 1039, 1356, 1800, 1915
PspN4I	GGNNCC	4 cut(s)	196, 358, 951, 1355
PspOMI	GGGCCC	1 cut(s)	1353
PspPI	GGNCC	5 cut(s)	159, 407, 949, 1353, 1354
PspPPI	RGGWCCY	1 cut(s)	159
PspXI	VCTCGAGB	1 cut(s)	1806
PsuI	RGATCY	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	2 cut(s)	256, 1400
RsaI	GTAC	3 cut(s)	358, 791, 1341
RsaNI	GTAC	3 cut(s)	357, 790, 1340
RseI	CAYNNNNRTG	3 cut(s)	527, 1169, 1985
Rsr2I	CGGWCCG	1 cut(s)	407
RsrII	CGGWCCG	1 cut(s)	407
SacI	GAGCTC	2 cut(s)	120, 227
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	5 cut(s)	177, 732, 1886, 2013, 2022
Sau3AI	GATC	8 cut(s)	121, 266, 350, 392, 417, 754, 829, 1498
Sau96I	GGNCC	5 cut(s)	159, 407, 949, 1353, 1354
SchI	GAGTC	5 cut(s)	35, 46, 59, 728, 1190
SduI	GDGCHC	4 cut(s)	120, 227, 329, 1357
SexAI	ACCWGGT	1 cut(s)	1915
SfaNI	GCATC	8 cut(s)	394, 664, 979, 1102, 1102, 1147, 1234, 1955
SfcI	CTRYAG	1 cut(s)	1401
SfoI	GGCGCC	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	1806
SfuI	TTCGAA	2 cut(s)	665, 686
SgrAI	CRCCGGYG	1 cut(s)	440
SinI	GGWCC	3 cut(s)	159, 407, 949
SlaI	CTCGAG	1 cut(s)	1806
SmiI	ATTTAAAT	1 cut(s)	1887
SmiMI	CAYNNNNRTG	3 cut(s)	527, 1169, 1985
SmlI	CTYRAG	5 cut(s)	1488, 1553, 1655, 1753, 1806
SmoI	CTYRAG	5 cut(s)	1488, 1553, 1655, 1753, 1806
SphI	GCATGC	1 cut(s)	1324
Sse9I	AATT	8 cut(s)	370, 505, 564, 579, 1282, 1570, 1882, 2015
SspDI	GGCGCC	1 cut(s)	194
SspI	AATATT	1 cut(s)	1459
SspMI	CTAG	1 cut(s)	1007
SstI	GAGCTC	2 cut(s)	120, 227
StyI	CCWWGG	1 cut(s)	1206
SwaI	ATTTAAAT	1 cut(s)	1887
TaaI	ACNGT	5 cut(s)	310, 529, 644, 1059, 1629
TaiI	ACGT	2 cut(s)	437, 456
TaqII	GACCGA	1 cut(s)	385
TasI	AATT	8 cut(s)	370, 505, 564, 579, 1282, 1570, 1882, 2015
TatI	WGTACW	2 cut(s)	789, 1339
TauI	GCSGC	8 cut(s)	132, 200, 367, 543, 630, 884, 887, 907
TfiI	GAWTC	4 cut(s)	1151, 1250, 1660, 1790
Tru1I	TTAA	5 cut(s)	177, 732, 1886, 2013, 2022
Tru9I	TTAA	5 cut(s)	177, 732, 1886, 2013, 2022
TscAI	CASTG	3 cut(s)	171, 1089, 1740
TseFI	GTSAC	3 cut(s)	62, 70, 1080
TseI	GCWGC	5 cut(s)	860, 1160, 1397, 1535, 1901
Tsp45I	GTSAC	3 cut(s)	62, 70, 1080
TspDTI	ATGAA	4 cut(s)	498, 1832, 1922, 1969
TspGWI	ACGGA	2 cut(s)	50, 1817
TspRI	CASTG	3 cut(s)	171, 1089, 1740
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	808
VpaK11BI	GGWCC	3 cut(s)	159, 407, 949
XapI	RAATTY	1 cut(s)	2015
XceI	RCATGY	1 cut(s)	1324
XhoI	CTCGAG	1 cut(s)	1806
XmiI	GTMKAC	1 cut(s)	280
XmnI	GAANNNNTTC	2 cut(s)	1794, 1823
XspI	CTAG	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.