Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012780

Physical Location & Seq

Genomic Coordinates Reverse (-)

40846594 .. 40850784

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGACCAGGACCTCAGTGAGCGGCGTTAACAACAATGGAGGTGGCGCCGCCACCACTTCCAGCTCCAGTTCTAGCTCTTCCGGTTCAGTTTCCAGCAAAACCCAGCTGGGGAGAAGATCCGACGGCAGTAGACCCAACAACCACTCCGGCGAGCTAACTGTCTCCTCCGCAATGAGCCCCAGAGCTTCCGAGAGCGTCCGATCCGGTACCACGCCGCGTAATTGGAAGCCGGAGCATCGGAGATCGGTCTCCGCCGGACCGCCGTTGATCTACGCCGGCAAAACGTTCACCGGCGGTAGTAACGTTAGTGCCGGGGGTAGTGTTGGTAATGCTTGTGGAAATGTAGCAACCAATAATTCATCTTCAACCTCCACAACTGTGTTCCCCAGCGGCAATATATGCCCTTCTGGGAAAATTACGAAGTCTGGAATTGTGTGTAGAGCCAGCAGTAAGACTGATGTTTTGGGTTCGGGGTGCGGTAACTACGGCCACGGGAGCATAGTTCGAGGGGTTTCGAAATCGGATGCTACTAGTTCGAATGTGGGTGGCAACTTACAGGTTGGTGGGGAGTCTGTGGTGGTTAAGAGGGCAATGGGGAACTCTGATCCAGAGGAGGTGAAGAAGGCCGGGAATGAGATGTACAGGAAAGGCCATTTTGTGGAGGCATTGACAATGTATGATCGCGCTGTGTCTTTGTCTCCGGACAATGCTGCTTACCGGAGTAACAGGGCGGCGGCTTTGACCGCGCTGGGGCGGCTGGCCGAGGCTGTGAGGGAGTGTGAGGAGGCTGTCAGGTTGGACCCTGGTTATGGGAGGGCGCATCAACGGCTTGGTTCGCTTTATCTTCGAGTTAAGCTTCTTATTTTCAAGTCTGATAATTTCAAAGGTTATTCCTTGATGGATTCAAGACCAGTAACATTCATGGTTGATCAAATTCAGAGTCATCTCAGTCAATCTCTAACTTGGACATTTTACAGTTTTGGGCTAGCTGAGAATGCCTCCCACCACCTCTCCTTTCCTGGACAAAGGCCAGAACAGTCTGAGTTGCGGAAGTTGAAGTCCCTGGAGAAGCATCTGAAACAATGTTCAGATGCCCGTAAGCTTGGTGATTGGAAGAATGTGCTAAGGGAGTCGGATGCAGCCATAGAAATGGGAGTGGAGTCCTCCCCTCAGCTTGTGGCGTCCAAGGCAGAAGCTCTATTGAAGCTCCATAAACTCGAAGATGCAGAATCCATCCTATCAAACATACCCAAGTTTGAAAATTACCCTTCTTCCTGCTTGCAAACCAAGTTATTTGGCATGCTCGTTGAAGCTTATGTACTCTATGTAAGGGCCCAGGTTGAAATGGCATTTGGAAGGTTTGAGAATGCAGTAGCAGCTGTAGAGAAGGCTGGTGTAATCGATTACAGTAACGTTGAAGTTACAAGGGTATCAAATATTGTGAAAATGGTTGCGAAGGCTCGTTCTCAAGGTAACGATCTTTTCAGCTCTGGAAGGTTTGCTGAAGCCTGCGCTGCTTATGGGGAGGGCCTCAAGTATGATAGTTCCAATTCTGTTCTATACTGCAATAGAGCAGTTTGCTGGTCTAAGCTTGGACAATGGGAACAGTCTGTTGAAGACTGCAACCAAGCCCTCAAGATTCAACCTCATTACACCAAAGCCCTTCTAAGAAGGGCTGTGTCAAATGCAAAGTTAGAACGATGGGCAGAGGCAGTGAGAGATTATGAGGTCTTGAGGAGGGAACTTCCTGGAGACAATGAGGTTGTTGAATCTCTTCACCAGGCTCGAGTGGCATTGAAGAAGTTCCGTGGAGAGGAACTTCATCATGTAAAGTCTGGTGGTGAAGTGGAAGAAGTTTCTAATTTAAATAAGTTTAAAGCTGCAATATCATCACCTGGTGTTTCTGTCATTCATTTCAAAGTTGCATCCAATGAGCAATGTGAAGAACTATCCCCATTCATAAATATGCTTTGCGTTAGATATCCATCTGTTAAATTTTTTAAGGTGGATGTGGAGGAGAGCTTGGCCATAGCAAAAGCTGAGAGCATAAGATCTGTTCCAACATTTAAAATTTACAAGAATGGTGAAAAGGTCAAGGAGATGGTCCGCCCAAGCCACCAGTTCTTAGAGGACTCTGTGAGAACCAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_6 TPR_8 Thioredoxin

Protein Analysis

717

Amino Acids

77.9

Weight (kDa)

9.16

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	209 - 270	1.2e-07	Tetratricopeptide repeat
TPR_11	PF13414	210 - 251	9.1e-06	TPR repeat
TPR_1	PF00515	520 - 551	1.6e-07	Tetratricopeptide repeat
Thioredoxin	PF00085	622 - 705	7.4e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42580 AT3G58620 AT3G58620
malus_domestica	MD09G1238500.v1.1
prunus_persica	Prupe.3G121600_v2.0.a1 Prupe.3G121600_v2.0.a1
pyrus_communis	pycom09g15720
rosa_chinensis	RchiOBHm_Chr2g0129261
rosa_laevigata	RLG00000019069
rosa_multiflora	Rmu_sc0005230.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034740 Rroxscaffold_2G00114720
rosa_rugosa	Rorug02G0285900
rosa_samantha	Rh2AG337700 Rh2BG345500 Rh2CG325100 Rh2DG363000
rosa_wichuraiana	Rw2G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	2 cut(s)	44, 206
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccBSI	CCGCTC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	130
AccII	CGCG	3 cut(s)	217, 684, 746
AccIII	TCCGGA	1 cut(s)	700
AclI	AACGTT	3 cut(s)	284, 303, 1413
AclWI	GGATC	3 cut(s)	111, 195, 599
AcoI	YGGCCR	3 cut(s)	487, 759, 2025
AcsI	RAATTY	3 cut(s)	933, 1994, 2070
AcuI	CTGAAG	1 cut(s)	1524
AcyI	GRCGYC	2 cut(s)	45, 1181
AdeI	CACNNNGTG	1 cut(s)	1898
AfaI	GTAC	3 cut(s)	208, 641, 1320
AfiI	CCNNNNNNNGG	5 cut(s)	108, 658, 750, 809, 1813
AhlI	ACTAGT	1 cut(s)	530
AjnI	CCWGG	8 cut(s)	5, 802, 1018, 1062, 1335, 1747, 1779, 1894
AjuI	GAANNNNNNNTTGG	2 cut(s)	1335, 1367
AleI	CACNNNNGTG	1 cut(s)	377
Alw26I	GTCTC	4 cut(s)	166, 253, 702, 1746
AlwI	GGATC	3 cut(s)	111, 195, 599
Ama87I	CYCGRG	1 cut(s)	1785
Aor13HI	TCCGGA	1 cut(s)	700
AoxI	GGCC	8 cut(s)	487, 624, 649, 759, 1028, 1332, 1528, 2025
ApaI	GGGCCC	1 cut(s)	1336
ApeKI	GCWGC	5 cut(s)	710, 1139, 1376, 1514, 1880
ApoI	RAATTY	3 cut(s)	933, 1994, 2070
ArsI	GACNNNNNNTTYG	4 cut(s)	445, 477, 925, 957
Asp700I	GAANNNNTTC	2 cut(s)	1773, 1802
Asp718I	GGTACC	1 cut(s)	206
AspLEI	GCGC	5 cut(s)	47, 686, 748, 820, 1514
AspS9I	GGNCC	7 cut(s)	9, 257, 799, 1332, 1333, 1528, 2104
AsuC2I	CCSGG	2 cut(s)	313, 628
AsuHPI	GGTGA	7 cut(s)	280, 628, 1118, 1769, 1853, 1884, 2096
AsuII	TTCGAA	2 cut(s)	515, 536
AsuNHI	GCTAGC	1 cut(s)	985
AvaI	CYCGRG	1 cut(s)	1785
AvaII	GGWCC	4 cut(s)	9, 257, 799, 2104
BaeGI	GKGCMC	1 cut(s)	1336
BaeI	ACNNNNGTAYC	2 cut(s)	1413, 1446
BalI	TGGCCA	1 cut(s)	2027
BanI	GGYRCC	2 cut(s)	44, 206
BanII	GRGCYC	2 cut(s)	179, 1336
BarI	GAAGNNNNNNTAC	2 cut(s)	1302, 1334
BbsI	GAAGAC	1 cut(s)	1623
BbvCI	CCTCAGC	1 cut(s)	1170
BbvI	GCAGC	5 cut(s)	697, 1151, 1388, 1501, 1867
BccI	CCATC	5 cut(s)	892, 1241, 1695, 1993, 2095
BceAI	ACGGC	4 cut(s)	139, 247, 502, 842
BciT130I	CCWGG	8 cut(s)	7, 804, 1020, 1064, 1337, 1749, 1781, 1896
BclI	TGATCA	1 cut(s)	928
BcnI	CCSGG	2 cut(s)	313, 628
BcoDI	GTCTC	4 cut(s)	166, 253, 702, 1746
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	4 cut(s)	72, 531, 986, 2152
BfmI	CTRYAG	1 cut(s)	1380
BfoI	RGCGCY	1 cut(s)	48
BglII	AGATCT	1 cut(s)	2051
Bme18I	GGWCC	4 cut(s)	9, 257, 799, 2104
BmeT110I	CYCGRG	1 cut(s)	1785
BmgT120I	GGNCC	7 cut(s)	9, 257, 799, 1332, 1333, 1528, 2104
BmiI	GGNNCC	4 cut(s)	46, 208, 801, 1334
BmsI	GCATC	8 cut(s)	244, 514, 829, 1081, 1081, 1126, 1213, 1934
BmtI	GCTAGC	1 cut(s)	989
BpiI	GAAGAC	1 cut(s)	1623
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	3 cut(s)	49, 1085, 1770
Bpu10I	CCTNAGC	2 cut(s)	1124, 1170
Bpu14I	TTCGAA	2 cut(s)	515, 536
BpuEI	CTTGAG	4 cut(s)	1452, 1517, 1619, 1753
BpuMI	CCSGG	2 cut(s)	313, 628
Bsa29I	ATCGAT	1 cut(s)	1401
BsaBI	GATNNNNATC	1 cut(s)	1984
BsaHI	GRCGYC	2 cut(s)	45, 1181
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	8 cut(s)	312, 490, 762, 802, 1062, 1185, 1335, 1807
BsaWI	WCCGGW	4 cut(s)	80, 203, 700, 717
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 995, 1025
Bsc4I	CCNNNNNNNGG	5 cut(s)	108, 658, 750, 809, 1813
Bse118I	RCCGGY	2 cut(s)	275, 290
Bse1I	ACTGG	4 cut(s)	66, 911, 2119, 2145
Bse3DI	GCAATG	3 cut(s)	177, 597, 1943
Bse8I	GATNNNNATC	1 cut(s)	1984
BseAI	TCCGGA	1 cut(s)	700
BseBI	CCWGG	8 cut(s)	7, 804, 1020, 1064, 1337, 1749, 1781, 1896
BseCI	ATCGAT	1 cut(s)	1401
BseDI	CCNNGG	8 cut(s)	312, 490, 762, 802, 1062, 1185, 1335, 1807
BseGI	GGATG	5 cut(s)	529, 1141, 1233, 1925, 2014
BseJI	GATNNNNATC	1 cut(s)	1984
BseLI	CCNNNNNNNGG	5 cut(s)	108, 658, 750, 809, 1813
BseMI	GCAATG	3 cut(s)	177, 597, 1943
BseMII	CTCAG	6 cut(s)	27, 961, 981, 1032, 1184, 2031
BseNI	ACTGG	4 cut(s)	66, 911, 2119, 2145
BseRI	GAGGAG	5 cut(s)	154, 626, 797, 1750, 2030
BseSI	GKGCMC	1 cut(s)	1336
BseXI	GCAGC	5 cut(s)	697, 1151, 1388, 1501, 1867
BseYI	CCCAGC	4 cut(s)	102, 106, 386, 748
Bsh1236I	CGCG	3 cut(s)	217, 684, 746
BshFI	GGCC	8 cut(s)	489, 626, 651, 761, 1030, 1334, 1530, 2027
BshNI	GGYRCC	2 cut(s)	44, 206
BshVI	ATCGAT	1 cut(s)	1401
BsiHKCI	CYCGRG	1 cut(s)	1785
BslFI	GGGAC	1 cut(s)	1045
BslI	CCNNNNNNNGG	5 cut(s)	108, 658, 750, 809, 1813
BsmAI	GTCTC	4 cut(s)	166, 253, 702, 1746
BsmFI	GGGAC	1 cut(s)	1045
BsmI	GAATGC	2 cut(s)	1000, 1372
BsnI	GGCC	8 cut(s)	489, 626, 651, 761, 1030, 1334, 1530, 2027
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	1785
Bsp119I	TTCGAA	2 cut(s)	515, 536
Bsp120I	GGGCCC	1 cut(s)	1332
Bsp1286I	GDGCHC	2 cut(s)	179, 1336
Bsp13I	TCCGGA	1 cut(s)	700
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	9 cut(s)	116, 200, 242, 267, 604, 679, 928, 1477, 2051
BspANI	GGCC	8 cut(s)	489, 626, 651, 761, 1030, 1334, 1530, 2027
BspCNI	CTCAG	6 cut(s)	26, 960, 982, 1033, 1183, 2032
BspDI	ATCGAT	1 cut(s)	1401
BspEI	TCCGGA	1 cut(s)	700
BspFNI	CGCG	3 cut(s)	217, 684, 746
BspLI	GGNNCC	4 cut(s)	46, 208, 801, 1334
BspOI	GCTAGC	1 cut(s)	989
BspPI	GGATC	3 cut(s)	111, 195, 599
BspQI	GCTCTTC	1 cut(s)	82
BspT104I	TTCGAA	2 cut(s)	515, 536
BspT107I	GGYRCC	2 cut(s)	44, 206
BspTNI	GGTCTC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	21
BsrDI	GCAATG	3 cut(s)	177, 597, 1943
BsrFI	RCCGGY	2 cut(s)	275, 290
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	4 cut(s)	66, 911, 2119, 2145
BssAI	RCCGGY	2 cut(s)	275, 290
BssECI	CCNNGG	8 cut(s)	312, 490, 762, 802, 1062, 1185, 1335, 1807
BssMI	GATC	9 cut(s)	116, 200, 242, 267, 604, 679, 928, 1477, 2051
BssNI	GRCGYC	2 cut(s)	45, 1181
BssT1I	CCWWGG	1 cut(s)	1185
Bst2UI	CCWGG	8 cut(s)	7, 804, 1020, 1064, 1337, 1749, 1781, 1896
Bst4CI	ACNGT	6 cut(s)	160, 379, 977, 1038, 1409, 1608
Bst6I	CTCTTC	2 cut(s)	82, 1779
BstACI	GRCGYC	2 cut(s)	45, 1181
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	639
BstBI	TTCGAA	2 cut(s)	515, 536
BstC8I	GCNNGC	8 cut(s)	152, 277, 445, 759, 987, 1280, 1301, 1510
BstDSI	CCRYGG	2 cut(s)	490, 1807
BstF5I	GGATG	5 cut(s)	529, 1141, 1233, 1925, 2014
BstFNI	CGCG	3 cut(s)	217, 684, 746
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	5 cut(s)	47, 686, 748, 820, 1514
BstKTI	GATC	9 cut(s)	119, 203, 245, 270, 607, 682, 931, 1480, 2054
BstMAI	GTCTC	4 cut(s)	166, 253, 702, 1746
BstMBI	GATC	9 cut(s)	116, 200, 242, 267, 604, 679, 928, 1477, 2051
BstNI	CCWGG	8 cut(s)	7, 804, 1020, 1064, 1337, 1749, 1781, 1896
BstNSI	RCATGY	1 cut(s)	1303
BstSFI	CTRYAG	1 cut(s)	1380
BstSLI	GKGCMC	1 cut(s)	1336
BstUI	CGCG	3 cut(s)	217, 684, 746
BstV1I	GCAGC	5 cut(s)	697, 1151, 1388, 1501, 1867
BstV2I	GAAGAC	1 cut(s)	1623
BstX2I	RGATCY	2 cut(s)	116, 2051
BstXI	CCANNNNNNTGG	1 cut(s)	1150
BstYI	RGATCY	2 cut(s)	116, 2051
Bsu15I	ATCGAT	1 cut(s)	1401
BsuRI	GGCC	8 cut(s)	489, 626, 651, 761, 1030, 1334, 1530, 2027
BsuTUI	ATCGAT	1 cut(s)	1401
BtgI	CCRYGG	2 cut(s)	490, 1807
BtsCI	GGATG	5 cut(s)	529, 1141, 1233, 1925, 2014
BtsI	GCAGTG	1 cut(s)	1719
BtsIMutI	CAGTG	2 cut(s)	21, 1719
Cac8I	GCNNGC	8 cut(s)	152, 277, 445, 759, 987, 1280, 1301, 1510
CfoI	GCGC	5 cut(s)	47, 686, 748, 820, 1514
Cfr10I	RCCGGY	2 cut(s)	275, 290
Cfr13I	GGNCC	7 cut(s)	9, 257, 799, 1332, 1333, 1528, 2104
ClaI	ATCGAT	1 cut(s)	1401
CpoI	CGGWCCG	1 cut(s)	257
CseI	GACGC	2 cut(s)	184, 1170
CsiI	ACCWGGT	1 cut(s)	1894
Csp6I	GTAC	3 cut(s)	207, 640, 1319
CspCI	CAANNNNNGTGG	2 cut(s)	22, 57
CspI	CGGWCCG	1 cut(s)	257
CviAII	CATG	3 cut(s)	922, 1300, 1826
CviQI	GTAC	3 cut(s)	207, 640, 1319
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	9 cut(s)	118, 202, 244, 269, 606, 681, 930, 1479, 2053
DpnII	GATC	9 cut(s)	116, 200, 242, 267, 604, 679, 928, 1477, 2051
DraI	TTTAAA	3 cut(s)	1866, 1876, 2068
DraIII	CACNNNGTG	1 cut(s)	1898
EaeI	YGGCCR	3 cut(s)	487, 759, 2025
Eam1104I	CTCTTC	2 cut(s)	82, 1779
EarI	CTCTTC	2 cut(s)	82, 1779
EciI	GGCGGA	2 cut(s)	241, 2096
Eco130I	CCWWGG	1 cut(s)	1185
Eco24I	GRGCYC	2 cut(s)	179, 1336
Eco31I	GGTCTC	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	1982
Eco47I	GGWCC	4 cut(s)	9, 257, 799, 2104
Eco57I	CTGAAG	1 cut(s)	1524
Eco88I	CYCGRG	1 cut(s)	1785
EcoO109I	RGGNCCY	3 cut(s)	9, 1332, 1528
EcoRII	CCWGG	8 cut(s)	5, 802, 1018, 1062, 1335, 1747, 1779, 1894
EcoRV	GATATC	1 cut(s)	1982
EcoT14I	CCWWGG	1 cut(s)	1185
EcoT38I	GRGCYC	2 cut(s)	179, 1336
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	1185
FaeI	CATG	3 cut(s)	925, 1303, 1829
FaqI	GGGAC	1 cut(s)	1045
FatI	CATG	3 cut(s)	921, 1299, 1825
FbaI	TGATCA	1 cut(s)	928
FblI	GTMKAC	1 cut(s)	130
FokI	GGATG	5 cut(s)	536, 1148, 1220, 1912, 2021
FriOI	GRGCYC	2 cut(s)	179, 1336
FspBI	CTAG	4 cut(s)	72, 531, 986, 2152
GlaI	GCGC	5 cut(s)	46, 685, 747, 819, 1513
GsaI	CCCAGC	4 cut(s)	106, 110, 390, 752
GsuI	CTGGAG	3 cut(s)	49, 1085, 1770
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	8 cut(s)	489, 626, 651, 761, 1030, 1334, 1530, 2027
HgaI	GACGC	2 cut(s)	184, 1170
HhaI	GCGC	5 cut(s)	47, 686, 748, 820, 1514
Hin1I	GRCGYC	2 cut(s)	45, 1181
Hin1II	CATG	3 cut(s)	925, 1303, 1829
Hin6I	GCGC	5 cut(s)	45, 684, 746, 818, 1512
HinP1I	GCGC	5 cut(s)	45, 684, 746, 818, 1512
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	4 cut(s)	854, 1100, 1311, 1589
HinfI	GANTC	9 cut(s)	569, 902, 940, 1130, 1160, 1229, 1639, 1769, 2132
HpaI	GTTAAC	1 cut(s)	28
HphI	GGTGA	7 cut(s)	280, 628, 1118, 1769, 1853, 1884, 2096
Hpy166II	GTNNAC	3 cut(s)	28, 131, 288
Hpy188III	TCNNGA	7 cut(s)	426, 608, 701, 906, 1491, 1636, 1732
Hpy8I	GTNNAC	3 cut(s)	28, 131, 288
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	9 cut(s)	414, 616, 1278, 1350, 1381, 1450, 1488, 1665, 1673
HpyCH4III	ACNGT	6 cut(s)	160, 379, 977, 1038, 1409, 1608
HpyCH4IV	ACGT	3 cut(s)	284, 303, 1413
HpyCH4V	TGCA	9 cut(s)	1139, 1226, 1282, 1370, 1566, 1623, 1688, 1883, 1925
HpySE526I	ACGT	3 cut(s)	284, 303, 1413
Hsp92I	GRCGYC	2 cut(s)	45, 1181
Hsp92II	CATG	3 cut(s)	925, 1303, 1829
HspAI	GCGC	5 cut(s)	45, 684, 746, 818, 1512
KasI	GGCGCC	1 cut(s)	44
Kpn2I	TCCGGA	1 cut(s)	700
KpnI	GGTACC	1 cut(s)	210
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	928
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	9 cut(s)	116, 200, 242, 267, 604, 679, 928, 1477, 2051
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	4 cut(s)	68, 232, 495, 1212
Lsp1109I	GCAGC	5 cut(s)	697, 1151, 1388, 1501, 1867
LweI	GCATC	8 cut(s)	244, 514, 829, 1081, 1081, 1126, 1213, 1934
MabI	ACCWGGT	1 cut(s)	1894
MaeI	CTAG	4 cut(s)	72, 531, 986, 2152
MaeII	ACGT	3 cut(s)	284, 303, 1413
MaeIII	GTNAC	7 cut(s)	299, 479, 722, 913, 1409, 1420, 1472
MalI	GATC	9 cut(s)	118, 202, 244, 269, 606, 681, 930, 1479, 2053
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	9 cut(s)	116, 200, 242, 267, 604, 679, 928, 1477, 2051
MflI	RGATCY	2 cut(s)	116, 2051
MhlI	GDGCHC	2 cut(s)	179, 1336
MlsI	TGGCCA	1 cut(s)	2027
MluNI	TGGCCA	1 cut(s)	2027
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	5 cut(s)	578, 949, 1139, 1169, 2126
MmeI	TCCRAC	4 cut(s)	144, 777, 1113, 2084
Mox20I	TGGCCA	1 cut(s)	2027
MroI	TCCGGA	1 cut(s)	700
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	2 cut(s)	1773, 1802
MscI	TGGCCA	1 cut(s)	2027
MseI	TTAA	8 cut(s)	27, 582, 852, 1865, 1875, 1992, 2001, 2067
MslI	CAYNNNNRTG	3 cut(s)	377, 1148, 1964
Msp20I	TGGCCA	1 cut(s)	2027
MspA1I	CMGCKG	3 cut(s)	106, 390, 1379
Mva1269I	GAATGC	2 cut(s)	1000, 1372
MvaI	CCWGG	8 cut(s)	7, 804, 1020, 1064, 1337, 1749, 1781, 1896
MvnI	CGCG	3 cut(s)	217, 684, 746
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	2 cut(s)	313, 628
NdeII	GATC	9 cut(s)	116, 200, 242, 267, 604, 679, 928, 1477, 2051
NgoMIV	GCCGGC	1 cut(s)	275
NheI	GCTAGC	1 cut(s)	985
NlaIII	CATG	3 cut(s)	925, 1303, 1829
NlaIV	GGNNCC	4 cut(s)	46, 208, 801, 1334
NmeAIII	GCCGAG	1 cut(s)	787
NspI	RCATGY	1 cut(s)	1303
NspV	TTCGAA	2 cut(s)	515, 536
OliI	CACNNNNGTG	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	1303
PaeR7I	CTCGAG	1 cut(s)	1785
PciSI	GCTCTTC	1 cut(s)	82
PctI	GAATGC	2 cut(s)	1000, 1372
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	2 cut(s)	1773, 1802
PfeI	GAWTC	4 cut(s)	902, 1229, 1639, 1769
PflMI	CCANNNNNTGG	1 cut(s)	658
PfoI	TCCNGGA	2 cut(s)	1018, 1747
PleI	GAGTC	5 cut(s)	577, 948, 1138, 1168, 2126
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	5 cut(s)	577, 948, 1138, 1168, 2126
PpuMI	RGGWCCY	1 cut(s)	9
Psp1406I	AACGTT	3 cut(s)	284, 303, 1413
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	8 cut(s)	5, 802, 1018, 1062, 1335, 1747, 1779, 1894
PspFI	CCCAGC	4 cut(s)	102, 106, 386, 748
PspGI	CCWGG	8 cut(s)	5, 802, 1018, 1062, 1335, 1747, 1779, 1894
PspN4I	GGNNCC	4 cut(s)	46, 208, 801, 1334
PspOMI	GGGCCC	1 cut(s)	1332
PspPI	GGNCC	7 cut(s)	9, 257, 799, 1332, 1333, 1528, 2104
PspPPI	RGGWCCY	1 cut(s)	9
PspXI	VCTCGAGB	1 cut(s)	1785
PsuI	RGATCY	2 cut(s)	116, 2051
PvuII	CAGCTG	2 cut(s)	106, 1379
RsaI	GTAC	3 cut(s)	208, 641, 1320
RsaNI	GTAC	3 cut(s)	207, 640, 1319
RseI	CAYNNNNRTG	3 cut(s)	377, 1148, 1964
Rsr2I	CGGWCCG	1 cut(s)	257
RsrII	CGGWCCG	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	8 cut(s)	27, 582, 852, 1865, 1875, 1992, 2001, 2067
Sau3AI	GATC	9 cut(s)	116, 200, 242, 267, 604, 679, 928, 1477, 2051
Sau96I	GGNCC	7 cut(s)	9, 257, 799, 1332, 1333, 1528, 2104
SchI	GAGTC	5 cut(s)	578, 949, 1139, 1169, 2126
SduI	GDGCHC	2 cut(s)	179, 1336
SexAI	ACCWGGT	1 cut(s)	1894
SfaNI	GCATC	8 cut(s)	244, 514, 829, 1081, 1081, 1126, 1213, 1934
SfcI	CTRYAG	1 cut(s)	1380
SfoI	GGCGCC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	1785
SfuI	TTCGAA	2 cut(s)	515, 536
SgrAI	CRCCGGYG	1 cut(s)	290
SinI	GGWCC	4 cut(s)	9, 257, 799, 2104
SlaI	CTCGAG	1 cut(s)	1785
SmiI	ATTTAAAT	1 cut(s)	1866
SmiMI	CAYNNNNRTG	3 cut(s)	377, 1148, 1964
SmlI	CTYRAG	5 cut(s)	1467, 1532, 1634, 1732, 1785
SmoI	CTYRAG	5 cut(s)	1467, 1532, 1634, 1732, 1785
SpeI	ACTAGT	1 cut(s)	530
SphI	GCATGC	1 cut(s)	1303
SspDI	GGCGCC	1 cut(s)	44
SspI	AATATT	1 cut(s)	1438
SspMI	CTAG	4 cut(s)	72, 531, 986, 2152
StyI	CCWWGG	1 cut(s)	1185
SwaI	ATTTAAAT	1 cut(s)	1866
TaaI	ACNGT	6 cut(s)	160, 379, 977, 1038, 1409, 1608
TaiI	ACGT	3 cut(s)	287, 306, 1416
TaqI	TCGA	7 cut(s)	505, 515, 536, 847, 1218, 1401, 1786
TaqII	GACCGA	1 cut(s)	235
TatI	WGTACW	2 cut(s)	639, 1318
TauI	GCSGC	7 cut(s)	24, 50, 217, 393, 734, 737, 757
TfiI	GAWTC	4 cut(s)	902, 1229, 1639, 1769
Tru1I	TTAA	8 cut(s)	27, 582, 852, 1865, 1875, 1992, 2001, 2067
Tru9I	TTAA	8 cut(s)	27, 582, 852, 1865, 1875, 1992, 2001, 2067
TscAI	CASTG	2 cut(s)	21, 1719
TseI	GCWGC	5 cut(s)	710, 1139, 1376, 1514, 1880
TspDTI	ATGAA	5 cut(s)	348, 910, 1811, 1901, 1948
TspGWI	ACGGA	1 cut(s)	1796
TspRI	CASTG	2 cut(s)	21, 1719
Van91I	CCANNNNNTGG	1 cut(s)	658
VpaK11BI	GGWCC	4 cut(s)	9, 257, 799, 2104
XapI	RAATTY	3 cut(s)	933, 1994, 2070
XceI	RCATGY	1 cut(s)	1303
XhoI	CTCGAG	1 cut(s)	1785
XmiI	GTMKAC	1 cut(s)	130
XmnI	GAANNNNTTC	2 cut(s)	1773, 1802
XspI	CTAG	4 cut(s)	72, 531, 986, 2152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.