Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012780

Physical Location & Seq

Genomic Coordinates Reverse (-)

50488626 .. 50492226

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTCGGCCGGGATCGGTTGAATTCTAAGGAGGATGAAGGGATCGGTGATGATCCGCATTTCTCTTCGGTGGAAAGGATTGATGTTGGGATTTTGCCGGAATTGGATCATCTCTATCCCGGAGGCGTGTTGGTTTCTAGGGAAGTCTTCGGTGGGTGCCGCCGGTGGTGGTGGAAGCGCAGCGGCGTATTCCCGCGAATGGTGGATGGCGGCGATGGCATGACCGCCTTCTCCGTAAGGTGTATCCTAGATGTGTTGATTGGGGCTAGCATTGGGCTGCTAGGGTTTGGTTTTGGGCCCAAGCAGTTGTTTTGTCCTCAAGGATCATGGGTTGGACTCTATTTCCTAGGGCCTGGGCTGGGAAATCCACCCCAAGAACTGGCTTTTGACTCGCTCACAAATTGCTTCCATGACCCAGTGAATTGCAATGCCCATAATAAAAACAAACCCAATTTCAAAGAGCTCGATCTGGATTCACCGGTCTTGCCCTTGATGACCAGGAGCTTAGTGAATGGTTTTAACAATAATGGGGGTGGCGCCACAACTTCCAGCTCTAATTCAAGCTCTTCCGGTTCGGTTTCCGGTAAAATTCAGTTGGGGATAAGATTCGACAACAAACCGAACAACCACTCCGAAGAATTGTTTCGCCTCTCTCTCTCTCTAAATGAAATTCCTAAAATGATGGCGACAATGCACCGAAGACAACGAAGTACTAGAGAGAAAGGGGACGAGGCGGTGGGTGATGAAGGAGAAGCAAGGTGTGCACTCGAGCCGCAGGCGGCGGAGCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_6 TPR_8 Thioredoxin

Protein Analysis

264

Amino Acids

28.8

Weight (kDa)

5.72

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42580 AT3G58620 AT3G58620
malus_domestica	MD09G1238500.v1.1
prunus_persica	Prupe.3G121600_v2.0.a1 Prupe.3G121600_v2.0.a1
pyrus_communis	pycom09g15720
rosa_chinensis	RchiOBHm_Chr2g0129261
rosa_laevigata	RLG00000019069
rosa_multiflora	Rmu_sc0005230.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034740 Rroxscaffold_2G00114720
rosa_rugosa	Rorug02G0285900
rosa_samantha	Rh2AG337700 Rh2BG345500 Rh2CG325100 Rh2DG363000
rosa_wichuraiana	Rw2G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	156, 536
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccII	CGCG	1 cut(s)	196
AclWI	GGATC	5 cut(s)	21, 47, 50, 114, 331
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	3 cut(s)	22, 588, 669
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	3 cut(s)	199, 359, 379
AgeI	ACCGGT	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	22, 457, 561
AjnI	CCWGG	2 cut(s)	352, 497
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
AluBI	AGCT	4 cut(s)	463, 504, 552, 564
AluI	AGCT	4 cut(s)	463, 504, 552, 564
Alw21I	GWGCWC	2 cut(s)	465, 766
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	5 cut(s)	21, 47, 50, 114, 331
Ama87I	CYCGRG	1 cut(s)	767
AoxI	GGCC	3 cut(s)	7, 296, 350
ApaI	GGGCCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	2 cut(s)	180, 277
ApoI	RAATTY	3 cut(s)	22, 588, 669
AsiGI	ACCGGT	1 cut(s)	478
Asp700I	GAANNNNTTC	1 cut(s)	642
AspA2I	CCTAGG	1 cut(s)	346
AspLEI	GCGC	2 cut(s)	180, 539
AspS9I	GGNCC	3 cut(s)	296, 297, 350
AsuC2I	CCSGG	2 cut(s)	11, 120
AsuHPI	GGTGA	3 cut(s)	59, 468, 752
AsuNHI	GCTAGC	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	767
AvrII	CCTAGG	1 cut(s)	346
BaeGI	GKGCMC	2 cut(s)	300, 766
BanI	GGYRCC	2 cut(s)	156, 536
BanII	GRGCYC	2 cut(s)	300, 465
BbsI	GAAGAC	2 cut(s)	139, 706
Bbv12I	GWGCWC	2 cut(s)	465, 766
BbvI	GCAGC	2 cut(s)	192, 264
BccI	CCATC	3 cut(s)	200, 209, 676
BciT130I	CCWGG	2 cut(s)	354, 499
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	2 cut(s)	11, 120
BfaI	CTAG	6 cut(s)	138, 248, 267, 281, 347, 714
BfoI	RGCGCY	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	7 cut(s)	160, 181, 184, 211, 278, 773, 780
BlnI	CCTAGG	1 cut(s)	346
BlsI	GCNGC	7 cut(s)	161, 182, 185, 212, 279, 774, 781
BmcAI	AGTACT	1 cut(s)	712
Bme1390I	CCNGG	4 cut(s)	11, 120, 354, 499
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	3 cut(s)	296, 297, 350
BmiI	GGNNCC	3 cut(s)	158, 298, 538
BmrFI	CCNGG	4 cut(s)	11, 120, 354, 499
BmrI	ACTGGG	1 cut(s)	410
BmtI	GCTAGC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	139, 706
BpuEI	CTTGAG	1 cut(s)	303
BpuMI	CCSGG	2 cut(s)	11, 120
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	346, 353
BsaWI	WCCGGW	3 cut(s)	478, 569, 581
BsaXI	ACNNNNNCTCC	3 cut(s)	614, 644, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 359, 379
Bse118I	RCCGGY	2 cut(s)	162, 478
Bse1I	ACTGG	2 cut(s)	384, 416
Bse3DI	GCAATG	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	354, 499
BseDI	CCNNGG	2 cut(s)	346, 353
BseGI	GGATG	2 cut(s)	40, 211
BseLI	CCNNNNNNNGG	3 cut(s)	199, 359, 379
BseMI	GCAATG	1 cut(s)	433
BseNI	ACTGG	2 cut(s)	384, 416
BseSI	GKGCMC	2 cut(s)	300, 766
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	192, 264
BseYI	CCCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	9, 298, 352
BshNI	GGYRCC	2 cut(s)	156, 536
BshTI	ACCGGT	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	465, 766
BsiHKCI	CYCGRG	1 cut(s)	767
BsiSI	CCGG	7 cut(s)	10, 98, 120, 163, 479, 570, 582
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	3 cut(s)	199, 359, 379
BsmFI	GGGAC	1 cut(s)	740
BsnI	GGCC	3 cut(s)	9, 298, 352
BsoBI	CYCGRG	1 cut(s)	767
Bsp120I	GGGCCC	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	300, 465, 766
Bsp143I	GATC	6 cut(s)	13, 42, 52, 106, 323, 466
BspANI	GGCC	3 cut(s)	9, 298, 352
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	158, 298, 538
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	5 cut(s)	21, 47, 50, 114, 331
BspQI	GCTCTTC	1 cut(s)	571
BspT107I	GGYRCC	2 cut(s)	156, 536
BsrDI	GCAATG	1 cut(s)	433
BsrFI	RCCGGY	2 cut(s)	162, 478
BsrI	ACTGG	2 cut(s)	384, 416
BssAI	RCCGGY	2 cut(s)	162, 478
BssECI	CCNNGG	2 cut(s)	346, 353
BssMI	GATC	6 cut(s)	13, 42, 52, 106, 323, 466
BssNI	GRCGYC	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	2 cut(s)	354, 499
Bst6I	CTCTTC	2 cut(s)	70, 571
BstACI	GRCGYC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	2 cut(s)	268, 777
BstDEI	CTNAG	2 cut(s)	27, 505
BstF5I	GGATG	2 cut(s)	40, 211
BstFNI	CGCG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	180, 539
BstKTI	GATC	6 cut(s)	16, 45, 55, 109, 326, 469
BstMBI	GATC	6 cut(s)	13, 42, 52, 106, 323, 466
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 761
BstNI	CCWGG	2 cut(s)	354, 499
BstSCI	CCNGG	4 cut(s)	9, 118, 352, 497
BstSLI	GKGCMC	2 cut(s)	300, 766
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	192, 264
BstV2I	GAAGAC	2 cut(s)	139, 706
BstZI	CGGCCG	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	9, 298, 352
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	40, 211
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	268, 777
CfoI	GCGC	2 cut(s)	180, 539
Cfr10I	RCCGGY	2 cut(s)	162, 478
Cfr13I	GGNCC	3 cut(s)	296, 297, 350
Csp6I	GTAC	1 cut(s)	711
CspAI	ACCGGT	1 cut(s)	478
CviAII	CATG	3 cut(s)	220, 327, 410
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	2 cut(s)	27, 505
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	6 cut(s)	15, 44, 54, 108, 325, 468
DpnII	GATC	6 cut(s)	13, 42, 52, 106, 323, 466
EaeI	YGGCCR	1 cut(s)	7
EagI	CGGCCG	1 cut(s)	7
Eam1104I	CTCTTC	2 cut(s)	70, 571
EarI	CTCTTC	2 cut(s)	70, 571
Ecl136II	GAGCTC	1 cut(s)	463
EclXI	CGGCCG	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	2 cut(s)	300, 465
Eco52I	CGGCCG	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	767
EcoICRI	GAGCTC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	352, 497
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	2 cut(s)	300, 465
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	3 cut(s)	223, 330, 413
FaiI	YATR	4 cut(s)	221, 328, 411, 435
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	3 cut(s)	219, 326, 409
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	7 cut(s)	160, 181, 184, 211, 278, 773, 780
FokI	GGATG	2 cut(s)	47, 218
FriOI	GRGCYC	2 cut(s)	300, 465
Fsp4HI	GCNGC	7 cut(s)	160, 181, 184, 211, 278, 773, 780
FspBI	CTAG	6 cut(s)	138, 248, 267, 281, 347, 714
GlaI	GCGC	2 cut(s)	179, 538
GluI	GCNGC	7 cut(s)	160, 181, 184, 211, 278, 773, 780
GsaI	CCCAGC	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	9, 298, 352
HapII	CCGG	7 cut(s)	10, 98, 120, 163, 479, 570, 582
HhaI	GCGC	2 cut(s)	180, 539
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	3 cut(s)	223, 330, 413
Hin6I	GCGC	2 cut(s)	178, 537
HinP1I	GCGC	2 cut(s)	178, 537
HinfI	GANTC	4 cut(s)	336, 389, 473, 606
HpaII	CCGG	7 cut(s)	10, 98, 120, 163, 479, 570, 582
HphI	GGTGA	3 cut(s)	59, 468, 752
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188I	TCNGA	1 cut(s)	634
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	1 cut(s)	764
HpyAV	CCTTC	3 cut(s)	32, 238, 740
HpyCH4V	TGCA	3 cut(s)	426, 694, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 761
HpyF3I	CTNAG	2 cut(s)	27, 505
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	3 cut(s)	223, 330, 413
HspAI	GCGC	2 cut(s)	178, 537
KasI	GGCGCC	1 cut(s)	536
Kzo9I	GATC	6 cut(s)	13, 42, 52, 106, 323, 466
LguI	GCTCTTC	1 cut(s)	571
LmnI	GCTCC	2 cut(s)	501, 784
Lsp1109I	GCAGC	2 cut(s)	192, 264
MaeI	CTAG	6 cut(s)	138, 248, 267, 281, 347, 714
MalI	GATC	6 cut(s)	15, 44, 54, 108, 325, 468
MboI	GATC	6 cut(s)	13, 42, 52, 106, 323, 466
MboII	GAAGA	5 cut(s)	57, 139, 558, 647, 711
MhlI	GDGCHC	3 cut(s)	300, 465, 766
MluCI	AATT	9 cut(s)	22, 101, 400, 421, 451, 556, 588, 638, 669
Mly113I	GGCGCC	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	330, 383
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	5 cut(s)	25, 116, 327, 659, 724
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	7 cut(s)	10, 98, 120, 163, 479, 570, 582
MspR9I	CCNGG	4 cut(s)	11, 120, 354, 499
MvaI	CCWGG	2 cut(s)	354, 499
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	216, 761
NarI	GGCGCC	1 cut(s)	537
NciI	CCSGG	2 cut(s)	11, 120
NdeII	GATC	6 cut(s)	13, 42, 52, 106, 323, 466
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	223, 330, 413
NlaIV	GGNNCC	3 cut(s)	158, 298, 538
PaeR7I	CTCGAG	1 cut(s)	767
PciSI	GCTCTTC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	473, 606
PflMI	CCANNNNNTGG	1 cut(s)	379
PfoI	TCCNGGA	1 cut(s)	118
PinAI	ACCGGT	1 cut(s)	478
PkrI	GCNGC	7 cut(s)	161, 182, 185, 212, 279, 774, 781
PleI	GAGTC	2 cut(s)	330, 383
PluTI	GGCGCC	1 cut(s)	540
PpsI	GAGTC	2 cut(s)	330, 383
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	352, 497
PspFI	CCCAGC	1 cut(s)	358
PspGI	CCWGG	2 cut(s)	352, 497
PspN4I	GGNNCC	3 cut(s)	158, 298, 538
PspOMI	GGGCCC	1 cut(s)	296
PspPI	GGNCC	3 cut(s)	296, 297, 350
PspXI	VCTCGAGB	1 cut(s)	767
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	7 cut(s)	160, 181, 184, 211, 278, 773, 780
Sau3AI	GATC	6 cut(s)	13, 42, 52, 106, 323, 466
Sau96I	GGNCC	3 cut(s)	296, 297, 350
ScaI	AGTACT	1 cut(s)	712
SchI	GAGTC	2 cut(s)	330, 383
ScrFI	CCNGG	4 cut(s)	11, 120, 354, 499
SduI	GDGCHC	3 cut(s)	300, 465, 766
SetI	ASST	6 cut(s)	242, 465, 506, 554, 566, 761
SfoI	GGCGCC	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	767
SgrAI	CRCCGGYG	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	318, 767
SmoI	CTYRAG	2 cut(s)	318, 767
Sse9I	AATT	9 cut(s)	22, 101, 400, 421, 451, 556, 588, 638, 669
SspDI	GGCGCC	1 cut(s)	536
SspMI	CTAG	6 cut(s)	138, 248, 267, 281, 347, 714
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	4 cut(s)	9, 118, 352, 497
StyI	CCWWGG	1 cut(s)	346
TaqI	TCGA	3 cut(s)	465, 609, 768
TasI	AATT	9 cut(s)	22, 101, 400, 421, 451, 556, 588, 638, 669
TatI	WGTACW	1 cut(s)	710
TauI	GCSGC	5 cut(s)	162, 186, 213, 775, 782
TfiI	GAWTC	2 cut(s)	473, 606
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	2 cut(s)	180, 277
TspDTI	ATGAA	3 cut(s)	51, 681, 759
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	423
Van91I	CCANNNNNTGG	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	3 cut(s)	22, 588, 669
XhoI	CTCGAG	1 cut(s)	767
XmaJI	CCTAGG	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	6 cut(s)	138, 248, 267, 281, 347, 714
ZrmI	AGTACT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.