Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005230.1

Orthogroup ID

OG0012780

Physical Location & Seq

Genomic Coordinates Forward (+)

55298 .. 58725

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005230.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

atgccccagacaggcaaatccacccaagaaccgggtttcgactcgctcccgactcgcttccgtgactcagtcacttgcaatgacgaccataataagaacaagcccgatttcaaagagctcgatctgggcggctcacccgtctcgcccttgatgaccaggacctcagtgaacggcgttaacaacaatggaggtggcgccgccactacttccagctccagttcgagctcttccggttcggtttccagcaaaacccagctggggagaagatccgacggcagtagacccaacaaccactccggcgagctaactgtctcctccgaaatgagccccagagcttccgagagcgtccgatccggtaccacgccgcgtaattggaagccggagcatcggagatcggtctccgccggaccgccgttgatctactccggcaaaacgttcaccggcggtagtaacgttagtgccgggggtagcgttggtaatgcttgtggaaatgtagcaaccaataattcatcttcaacctccacaactgtgttccccagcggcaacatatgcccttccgggaaaattacgaagtctggaattgtgtggagagccagcagtaagactgatgttttgggttcggggtgcggcaactacggccacggtagcatagttcgaggggtttcgaaatcggatgctactggttcgaatgtgggtggcaacttacagattggtggggagtctgtggcggttaagagggcaatggggaactctgatccagaggaggtgaagaaggctgggaatgagatgtataagaaaggccattttgcggaggcattgacaatgtatgatcgcgctgtgtctttgtctccggacaatgctgcttaccggagtaacagggcggcggcattgaccgcgctggggcggctggccgaggctgtgagggagtgtgaggaggctgtcaggttggaccctggttatgggagggcgcatcaacggcttggctcgctttatcttcgtttcaagtctgataatttcaaaggttattccttgatggattcaagaccagtaacattcatggcggaaaatgcctcccaccacctctcatttcctggacaaaggccagaacagtctgagttgcagaagttgaagtcactggagaagcatctgaaacaatgttcagatgcccgtaagcttggtgattggaagaatgtgctaagggaatcggatgcagccatagaaatgggactggagtcctcccctcagcttgtggcgtccaaggcagaagctctattgaagctccataaactcgaagatgcagaatccatcctatcaaacatacctaagtttgaaaattacccttcttcctgcttgcaaaccaagttatttggcatgctcgttgaagcttatgtactctatgtaagggcccaggttgaaatggcattcggaaggtttgagaatgcagtagcagctgtagagaaggctggtgtaattgattacagcaatgttgaagttacaagggtatcaaatattgtgaaaatggttgcgaaagctcgttctcaaggtaatgatctttttagctctggaaggtttgctgaagcctgcgctgcttatggggagggcctcaagtatgatagttccaattctgttctatactgcaatagagcagtttgctggtctaagcttggacaatgggaacagtctgttgaagactgcaaccaagccctcaagattcagcctcattacaccaaagcccttctaagaagggctgtgtcgaatgcaaagttagaacgatgggcagaggcagtgagagattatgaggtcttgaggagggaactccccggagacaatgaggttgtagaatctcttcaccaggctcgagtggcattgaagaagttccgtggagaggaacttcatcatgtaaagtctggcggtgaagtggaagaagtttctaatttaaataagttcaaagctgcaatatcatcacctggtgtttctgtcattcatttcaaagttgaatccaatgagcaatgtgaagaactatccccattcataaatatgctttgcgttagatatccatctgttaaattttttaaggtggatgtggaggagagcttagccatagcaaaagctgagagcataagatctgttccaacatttaaaatttacaagaatggtgaaaaggtcaaggagatggtccgcccaagccaccagttcttagaggactctgtgagaaccagtttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_6 TPR_8 Thioredoxin

Protein Analysis

741

Amino Acids

80.51

Weight (kDa)

8.91

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42580 AT3G58620 AT3G58620
malus_domestica	MD09G1238500.v1.1
prunus_persica	Prupe.3G121600_v2.0.a1 Prupe.3G121600_v2.0.a1
pyrus_communis	pycom09g15720
rosa_chinensis	RchiOBHm_Chr2g0129261
rosa_laevigata	RLG00000019069
rosa_multiflora	Rmu_sc0005230.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034740 Rroxscaffold_2G00114720
rosa_rugosa	Rorug02G0285900
rosa_samantha	Rh2AG337700 Rh2BG345500 Rh2CG325100 Rh2DG363000
rosa_wichuraiana	Rw2G027390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	2 cut(s)	194, 356
AccI	GTMKAC	1 cut(s)	280
AccII	CGCG	3 cut(s)	367, 834, 896
AccIII	TCCGGA	1 cut(s)	850
AclI	AACGTT	2 cut(s)	434, 453
AclWI	GGATC	3 cut(s)	261, 345, 749
AcoI	YGGCCR	2 cut(s)	637, 909
AcsI	RAATTY	2 cut(s)	2066, 2142
AcuI	CTGAAG	1 cut(s)	1596
AcyI	GRCGYC	2 cut(s)	195, 1253
AdeI	CACNNNGTG	1 cut(s)	1970
AfaI	GTAC	2 cut(s)	358, 1392
AfiI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1885
AjnI	CCWGG	6 cut(s)	155, 952, 1090, 1407, 1851, 1966
AleI	CACNNNNGTG	1 cut(s)	527
Alw21I	GWGCWC	2 cut(s)	120, 227
Alw26I	GTCTC	5 cut(s)	145, 316, 403, 852, 1818
AlwI	GGATC	3 cut(s)	261, 345, 749
Ama87I	CYCGRG	1 cut(s)	1857
Aor13HI	TCCGGA	1 cut(s)	850
AoxI	GGCC	6 cut(s)	637, 799, 909, 1100, 1404, 1600
ApaI	GGGCCC	1 cut(s)	1408
ApeKI	GCWGC	5 cut(s)	860, 1211, 1448, 1586, 1952
ApoI	RAATTY	2 cut(s)	2066, 2142
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	2 cut(s)	1845, 1874
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	5 cut(s)	197, 836, 898, 970, 1586
AspS9I	GGNCC	7 cut(s)	159, 407, 949, 1404, 1405, 1600, 2176
AsuC2I	CCSGG	4 cut(s)	33, 463, 559, 1821
AsuHPI	GGTGA	8 cut(s)	126, 430, 778, 1190, 1841, 1925, 1956, 2168
AsuII	TTCGAA	2 cut(s)	665, 686
AvaI	CYCGRG	1 cut(s)	1857
AvaII	GGWCC	4 cut(s)	159, 407, 949, 2176
BaeGI	GKGCMC	1 cut(s)	1408
BaeI	ACNNNNGTAYC	2 cut(s)	1485, 1518
BanI	GGYRCC	2 cut(s)	194, 356
BanII	GRGCYC	4 cut(s)	120, 227, 329, 1408
BarI	GAAGNNNNNNTAC	4 cut(s)	1374, 1406, 1830, 1862
BbsI	GAAGAC	1 cut(s)	1695
Bbv12I	GWGCWC	2 cut(s)	120, 227
BbvCI	CCTCAGC	1 cut(s)	1242
BbvI	GCAGC	5 cut(s)	847, 1223, 1460, 1573, 1939
BccI	CCATC	5 cut(s)	1027, 1313, 1767, 2065, 2167
BceAI	ACGGC	5 cut(s)	187, 289, 397, 652, 992
BciT130I	CCWGG	6 cut(s)	157, 954, 1092, 1409, 1853, 1968
BcnI	CCSGG	4 cut(s)	33, 463, 559, 1821
BcoDI	GTCTC	5 cut(s)	145, 316, 403, 852, 1818
BfaI	CTAG	1 cut(s)	2224
BfmI	CTRYAG	1 cut(s)	1452
BfoI	RGCGCY	1 cut(s)	198
BglII	AGATCT	1 cut(s)	2123
BlpI	GCTNAGC	1 cut(s)	2095
Bme18I	GGWCC	4 cut(s)	159, 407, 949, 2176
BmeT110I	CYCGRG	1 cut(s)	1857
BmgT120I	GGNCC	7 cut(s)	159, 407, 949, 1404, 1405, 1600, 2176
BmiI	GGNNCC	4 cut(s)	196, 358, 951, 1406
BmsI	GCATC	7 cut(s)	394, 664, 979, 1153, 1153, 1198, 1285
BoxI	GACNNNNGTC	1 cut(s)	1231
BpiI	GAAGAC	1 cut(s)	1695
BpmI	CTGGAG	3 cut(s)	199, 1157, 1250
Bpu10I	CCTNAGC	2 cut(s)	1196, 1242
Bpu1102I	GCTNAGC	1 cut(s)	2095
Bpu14I	TTCGAA	2 cut(s)	665, 686
BpuEI	CTTGAG	4 cut(s)	1524, 1589, 1691, 1825
BpuMI	CCSGG	4 cut(s)	33, 463, 559, 1821
BsaBI	GATNNNNATC	1 cut(s)	2056
BsaHI	GRCGYC	2 cut(s)	195, 1253
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	8 cut(s)	462, 640, 912, 952, 1257, 1407, 1819, 1879
BsaWI	WCCGGW	4 cut(s)	230, 353, 850, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1885
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	7 cut(s)	216, 685, 1046, 1140, 1233, 2191, 2217
Bse3DI	GCAATG	4 cut(s)	85, 747, 1489, 2015
Bse8I	GATNNNNATC	1 cut(s)	2056
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	6 cut(s)	157, 954, 1092, 1409, 1853, 1968
BseDI	CCNNGG	8 cut(s)	462, 640, 912, 952, 1257, 1407, 1819, 1879
BseGI	GGATG	4 cut(s)	679, 1213, 1305, 2086
BseJI	GATNNNNATC	1 cut(s)	2056
BseLI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1885
BseMI	GCAATG	4 cut(s)	85, 747, 1489, 2015
BseMII	CTCAG	5 cut(s)	81, 177, 1104, 1256, 2103
BseNI	ACTGG	7 cut(s)	216, 685, 1046, 1140, 1233, 2191, 2217
BseRI	GAGGAG	5 cut(s)	304, 776, 947, 1822, 2102
BseSI	GKGCMC	1 cut(s)	1408
BseXI	GCAGC	5 cut(s)	847, 1223, 1460, 1573, 1939
BseYI	CCCAGC	5 cut(s)	252, 256, 536, 776, 898
Bsh1236I	CGCG	3 cut(s)	367, 834, 896
BshFI	GGCC	6 cut(s)	639, 801, 911, 1102, 1406, 1602
BshNI	GGYRCC	2 cut(s)	194, 356
BsiHKAI	GWGCWC	2 cut(s)	120, 227
BsiHKCI	CYCGRG	1 cut(s)	1857
BslFI	GGGAC	1 cut(s)	1239
BslI	CCNNNNNNNGG	7 cut(s)	11, 31, 258, 808, 900, 959, 1885
BsmAI	GTCTC	5 cut(s)	145, 316, 403, 852, 1818
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	1239
BsmI	GAATGC	3 cut(s)	1421, 1444, 1762
BsnI	GGCC	6 cut(s)	639, 801, 911, 1102, 1406, 1602
Bso31I	GGTCTC	1 cut(s)	403
BsoBI	CYCGRG	1 cut(s)	1857
Bsp119I	TTCGAA	2 cut(s)	665, 686
Bsp120I	GGGCCC	1 cut(s)	1404
Bsp1286I	GDGCHC	4 cut(s)	120, 227, 329, 1408
Bsp13I	TCCGGA	1 cut(s)	850
Bsp143I	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1549, 2123
Bsp1720I	GCTNAGC	1 cut(s)	2095
BspANI	GGCC	6 cut(s)	639, 801, 911, 1102, 1406, 1602
BspCNI	CTCAG	5 cut(s)	80, 176, 1105, 1255, 2104
BspEI	TCCGGA	1 cut(s)	850
BspFNI	CGCG	3 cut(s)	367, 834, 896
BspLI	GGNNCC	4 cut(s)	196, 358, 951, 1406
BspPI	GGATC	3 cut(s)	261, 345, 749
BspQI	GCTCTTC	1 cut(s)	232
BspT104I	TTCGAA	2 cut(s)	665, 686
BspT107I	GGYRCC	2 cut(s)	194, 356
BspTNI	GGTCTC	1 cut(s)	403
BsrDI	GCAATG	4 cut(s)	85, 747, 1489, 2015
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	7 cut(s)	216, 685, 1046, 1140, 1233, 2191, 2217
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	8 cut(s)	462, 640, 912, 952, 1257, 1407, 1819, 1879
BssMI	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1549, 2123
BssNI	GRCGYC	2 cut(s)	195, 1253
BssT1I	CCWWGG	1 cut(s)	1257
Bst2UI	CCWGG	6 cut(s)	157, 954, 1092, 1409, 1853, 1968
Bst4CI	ACNGT	5 cut(s)	310, 529, 644, 1110, 1680
Bst6I	CTCTTC	2 cut(s)	232, 1851
BstACI	GRCGYC	2 cut(s)	195, 1253
BstAPI	GCANNNNNTGC	1 cut(s)	549
BstBI	TTCGAA	2 cut(s)	665, 686
BstC8I	GCNNGC	7 cut(s)	302, 595, 909, 986, 1352, 1373, 1582
BstDSI	CCRYGG	2 cut(s)	640, 1879
BstF5I	GGATG	4 cut(s)	679, 1213, 1305, 2086
BstFNI	CGCG	3 cut(s)	367, 834, 896
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	5 cut(s)	197, 836, 898, 970, 1586
BstKTI	GATC	9 cut(s)	124, 269, 353, 395, 420, 757, 832, 1552, 2126
BstMAI	GTCTC	5 cut(s)	145, 316, 403, 852, 1818
BstMBI	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1549, 2123
BstNI	CCWGG	6 cut(s)	157, 954, 1092, 1409, 1853, 1968
BstNSI	RCATGY	1 cut(s)	1375
BstPAI	GACNNNNGTC	1 cut(s)	1231
BstSFI	CTRYAG	1 cut(s)	1452
BstSLI	GKGCMC	1 cut(s)	1408
BstUI	CGCG	3 cut(s)	367, 834, 896
BstV1I	GCAGC	5 cut(s)	847, 1223, 1460, 1573, 1939
BstV2I	GAAGAC	1 cut(s)	1695
BstX2I	RGATCY	2 cut(s)	266, 2123
BstXI	CCANNNNNNTGG	1 cut(s)	1222
BstYI	RGATCY	2 cut(s)	266, 2123
BsuRI	GGCC	6 cut(s)	639, 801, 911, 1102, 1406, 1602
BtgI	CCRYGG	2 cut(s)	640, 1879
BtsCI	GGATG	4 cut(s)	679, 1213, 1305, 2086
BtsI	GCAGTG	1 cut(s)	1791
BtsIMutI	CAGTG	3 cut(s)	171, 1133, 1791
Cac8I	GCNNGC	7 cut(s)	302, 595, 909, 986, 1352, 1373, 1582
CfoI	GCGC	5 cut(s)	197, 836, 898, 970, 1586
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	7 cut(s)	159, 407, 949, 1404, 1405, 1600, 2176
CpoI	CGGWCCG	1 cut(s)	407
CseI	GACGC	2 cut(s)	334, 1242
CsiI	ACCWGGT	1 cut(s)	1966
Csp6I	GTAC	2 cut(s)	357, 1391
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CspI	CGGWCCG	1 cut(s)	407
CviAII	CATG	3 cut(s)	1057, 1372, 1898
CviQI	GTAC	2 cut(s)	357, 1391
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	9 cut(s)	123, 268, 352, 394, 419, 756, 831, 1551, 2125
DpnII	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1549, 2123
DraI	TTTAAA	2 cut(s)	1938, 2140
DraIII	CACNNNGTG	1 cut(s)	1970
EaeI	YGGCCR	2 cut(s)	637, 909
Eam1104I	CTCTTC	2 cut(s)	232, 1851
EarI	CTCTTC	2 cut(s)	232, 1851
EciI	GGCGGA	3 cut(s)	391, 1076, 2168
Ecl136II	GAGCTC	2 cut(s)	118, 225
Eco130I	CCWWGG	1 cut(s)	1257
Eco24I	GRGCYC	4 cut(s)	120, 227, 329, 1408
Eco31I	GGTCTC	1 cut(s)	403
Eco32I	GATATC	1 cut(s)	2054
Eco47I	GGWCC	4 cut(s)	159, 407, 949, 2176
Eco53kI	GAGCTC	2 cut(s)	118, 225
Eco57I	CTGAAG	1 cut(s)	1596
Eco88I	CYCGRG	1 cut(s)	1857
EcoICRI	GAGCTC	2 cut(s)	118, 225
EcoO109I	RGGNCCY	3 cut(s)	159, 1404, 1600
EcoRII	CCWGG	6 cut(s)	155, 952, 1090, 1407, 1851, 1966
EcoRV	GATATC	1 cut(s)	2054
EcoT14I	CCWWGG	1 cut(s)	1257
EcoT38I	GRGCYC	4 cut(s)	120, 227, 329, 1408
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	1257
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	3 cut(s)	1060, 1375, 1901
FaqI	GGGAC	1 cut(s)	1239
FatI	CATG	3 cut(s)	1056, 1371, 1897
FauNDI	CATATG	1 cut(s)	548
FblI	GTMKAC	1 cut(s)	280
FokI	GGATG	4 cut(s)	686, 1220, 1292, 2093
FriOI	GRGCYC	4 cut(s)	120, 227, 329, 1408
FspBI	CTAG	1 cut(s)	2224
GlaI	GCGC	5 cut(s)	196, 835, 897, 969, 1585
GsaI	CCCAGC	5 cut(s)	256, 260, 540, 780, 902
GsuI	CTGGAG	3 cut(s)	199, 1157, 1250
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	6 cut(s)	639, 801, 911, 1102, 1406, 1602
HgaI	GACGC	2 cut(s)	334, 1242
HhaI	GCGC	5 cut(s)	197, 836, 898, 970, 1586
Hin1I	GRCGYC	2 cut(s)	195, 1253
Hin1II	CATG	3 cut(s)	1060, 1375, 1901
Hin6I	GCGC	5 cut(s)	195, 834, 896, 968, 1584
HinP1I	GCGC	5 cut(s)	195, 834, 896, 968, 1584
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	3 cut(s)	1172, 1383, 1661
HpaI	GTTAAC	1 cut(s)	178
HphI	GGTGA	8 cut(s)	126, 430, 778, 1190, 1841, 1925, 1956, 2168
Hpy166II	GTNNAC	4 cut(s)	169, 178, 281, 438
Hpy188III	TCNNGA	8 cut(s)	49, 576, 758, 851, 1041, 1563, 1708, 1804
Hpy8I	GTNNAC	4 cut(s)	169, 178, 281, 438
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	8 cut(s)	564, 766, 1350, 1422, 1453, 1560, 1737, 1745
HpyCH4III	ACNGT	5 cut(s)	310, 529, 644, 1110, 1680
HpyCH4IV	ACGT	2 cut(s)	434, 453
HpySE526I	ACGT	2 cut(s)	434, 453
Hsp92I	GRCGYC	2 cut(s)	195, 1253
Hsp92II	CATG	3 cut(s)	1060, 1375, 1901
HspAI	GCGC	5 cut(s)	195, 834, 896, 968, 1584
KasI	GGCGCC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	850
KpnI	GGTACC	1 cut(s)	360
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1549, 2123
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	4 cut(s)	51, 218, 382, 1284
Lsp1109I	GCAGC	5 cut(s)	847, 1223, 1460, 1573, 1939
LweI	GCATC	7 cut(s)	394, 664, 979, 1153, 1153, 1198, 1285
MabI	ACCWGGT	1 cut(s)	1966
MaeI	CTAG	1 cut(s)	2224
MaeII	ACGT	2 cut(s)	434, 453
MaeIII	GTNAC	7 cut(s)	62, 70, 449, 872, 1048, 1131, 1492
MalI	GATC	9 cut(s)	123, 268, 352, 394, 419, 756, 831, 1551, 2125
MboI	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1549, 2123
MflI	RGATCY	2 cut(s)	266, 2123
MhlI	GDGCHC	4 cut(s)	120, 227, 329, 1408
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	6 cut(s)	35, 46, 59, 728, 1241, 2198
MmeI	TCCRAC	3 cut(s)	294, 927, 2156
MroI	TCCGGA	1 cut(s)	850
MroXI	GAANNNNTTC	2 cut(s)	1845, 1874
MseI	TTAA	6 cut(s)	177, 732, 1937, 2064, 2073, 2139
MslI	CAYNNNNRTG	3 cut(s)	527, 1220, 2036
MspA1I	CMGCKG	3 cut(s)	256, 540, 1451
Mva1269I	GAATGC	3 cut(s)	1421, 1444, 1762
MvaI	CCWGG	6 cut(s)	157, 954, 1092, 1409, 1853, 1968
MvnI	CGCG	3 cut(s)	367, 834, 896
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	4 cut(s)	33, 463, 559, 1821
NdeI	CATATG	1 cut(s)	548
NdeII	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1549, 2123
NlaIII	CATG	3 cut(s)	1060, 1375, 1901
NlaIV	GGNNCC	4 cut(s)	196, 358, 951, 1406
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	3 cut(s)	62, 70, 1131
NspI	RCATGY	1 cut(s)	1375
NspV	TTCGAA	2 cut(s)	665, 686
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	1375
PaeR7I	CTCGAG	1 cut(s)	1857
PciSI	GCTCTTC	1 cut(s)	232
PctI	GAATGC	3 cut(s)	1421, 1444, 1762
PdmI	GAANNNNTTC	2 cut(s)	1845, 1874
PfeI	GAWTC	6 cut(s)	1037, 1202, 1301, 1711, 1841, 1997
PflFI	GACNNNGTC	1 cut(s)	68
PfoI	TCCNGGA	2 cut(s)	557, 1090
PleI	GAGTC	6 cut(s)	35, 46, 59, 727, 1240, 2198
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	6 cut(s)	35, 46, 59, 727, 1240, 2198
PpuMI	RGGWCCY	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	1231
Psp124BI	GAGCTC	2 cut(s)	120, 227
Psp1406I	AACGTT	2 cut(s)	434, 453
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	6 cut(s)	155, 952, 1090, 1407, 1851, 1966
PspFI	CCCAGC	5 cut(s)	252, 256, 536, 776, 898
PspGI	CCWGG	6 cut(s)	155, 952, 1090, 1407, 1851, 1966
PspN4I	GGNNCC	4 cut(s)	196, 358, 951, 1406
PspOMI	GGGCCC	1 cut(s)	1404
PspPI	GGNCC	7 cut(s)	159, 407, 949, 1404, 1405, 1600, 2176
PspPPI	RGGWCCY	1 cut(s)	159
PspXI	VCTCGAGB	1 cut(s)	1857
PsuI	RGATCY	2 cut(s)	266, 2123
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	2 cut(s)	256, 1451
RsaI	GTAC	2 cut(s)	358, 1392
RsaNI	GTAC	2 cut(s)	357, 1391
RseI	CAYNNNNRTG	3 cut(s)	527, 1220, 2036
Rsr2I	CGGWCCG	1 cut(s)	407
RsrII	CGGWCCG	1 cut(s)	407
SacI	GAGCTC	2 cut(s)	120, 227
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	6 cut(s)	177, 732, 1937, 2064, 2073, 2139
Sau3AI	GATC	9 cut(s)	121, 266, 350, 392, 417, 754, 829, 1549, 2123
Sau96I	GGNCC	7 cut(s)	159, 407, 949, 1404, 1405, 1600, 2176
SchI	GAGTC	6 cut(s)	35, 46, 59, 728, 1241, 2198
SduI	GDGCHC	4 cut(s)	120, 227, 329, 1408
SexAI	ACCWGGT	1 cut(s)	1966
SfaNI	GCATC	7 cut(s)	394, 664, 979, 1153, 1153, 1198, 1285
SfcI	CTRYAG	1 cut(s)	1452
SfoI	GGCGCC	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	1857
SfuI	TTCGAA	2 cut(s)	665, 686
SgrAI	CRCCGGYG	1 cut(s)	440
SinI	GGWCC	4 cut(s)	159, 407, 949, 2176
SlaI	CTCGAG	1 cut(s)	1857
SmiI	ATTTAAAT	1 cut(s)	1938
SmiMI	CAYNNNNRTG	3 cut(s)	527, 1220, 2036
SmlI	CTYRAG	5 cut(s)	1539, 1604, 1706, 1804, 1857
SmoI	CTYRAG	5 cut(s)	1539, 1604, 1706, 1804, 1857
SphI	GCATGC	1 cut(s)	1375
SspDI	GGCGCC	1 cut(s)	194
SspI	AATATT	1 cut(s)	1510
SspMI	CTAG	1 cut(s)	2224
SstI	GAGCTC	2 cut(s)	120, 227
StyI	CCWWGG	1 cut(s)	1257
SwaI	ATTTAAAT	1 cut(s)	1938
TaaI	ACNGT	5 cut(s)	310, 529, 644, 1110, 1680
TaiI	ACGT	2 cut(s)	437, 456
TaqI	TCGA	9 cut(s)	39, 120, 221, 655, 665, 686, 1290, 1754, 1858
TaqII	GACCGA	1 cut(s)	385
TatI	WGTACW	1 cut(s)	1390
TauI	GCSGC	8 cut(s)	132, 200, 367, 543, 630, 884, 887, 907
TfiI	GAWTC	6 cut(s)	1037, 1202, 1301, 1711, 1841, 1997
Tru1I	TTAA	6 cut(s)	177, 732, 1937, 2064, 2073, 2139
Tru9I	TTAA	6 cut(s)	177, 732, 1937, 2064, 2073, 2139
TscAI	CASTG	3 cut(s)	171, 1140, 1791
TseFI	GTSAC	3 cut(s)	62, 70, 1131
TseI	GCWGC	5 cut(s)	860, 1211, 1448, 1586, 1952
Tsp45I	GTSAC	3 cut(s)	62, 70, 1131
TspDTI	ATGAA	5 cut(s)	498, 1045, 1883, 1973, 2020
TspGWI	ACGGA	2 cut(s)	50, 1868
TspRI	CASTG	3 cut(s)	171, 1140, 1791
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	4 cut(s)	159, 407, 949, 2176
XapI	RAATTY	2 cut(s)	2066, 2142
XceI	RCATGY	1 cut(s)	1375
XhoI	CTCGAG	1 cut(s)	1857
XmiI	GTMKAC	1 cut(s)	280
XmnI	GAANNNNTTC	2 cut(s)	1845, 1874
XspI	CTAG	1 cut(s)	2224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.