RLG00000019405

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019343
Physical Location & Seq
Forward (+)
51612650 .. 51614261
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019405

Sequence Viewer

Length: 510 bp
ATGCAACCATGGAGGGGGCCTTTGATGGCTTTTGACAATCACAGATCAGCGAAGAAAGGGTGGATCCGGATTGTCTTTGACAGGGGATGGAAGCCGAGGAAGAGGATCAGATATGAGGTTATGGGTGGCATCATGCATCAAATTGGCCGAATGGAGGTGAGCAGAGCGCTCCGATTTGCAGTATGGACAGAAAAAAGCTTTATGTCACGCTCTGTGGCTGCGGAGGCAGGGAGAGCTGTGGCTCATCGAATTCCTACAATGGTGGGTGATTTAGTATGGAAGCCGGCGAATAGTTTGACTATATTTAGAGCGGCGGCAATTGGCAGTCAGCAACCAATGGCGGACGCGGTCTTGGTGGCAGCAGTGATTGTGGTGGGCGAGGATGTGGGGCTGCCTTCTCCTGAAGGGGTGTCCAATGCAATTGGGTGGAGCCATTCACGATGGAGGCCCAAACCGGTTTCGATGCCCAACTCATTTTGGGATATCCTCATCCATGGGGCTGGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.82

Weight (kDa)

11.26

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019343)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0323151
rosa_laevigata RLG00000019405
rosa_multiflora Rmu_sc0009428.1_g000003
rosa_roxburghii Rroxscaffold_1G00012700 Rroxscaffold_2G00079930 Rroxscaffold_5G00371700 Rroxscaffold_6G00412040
rosa_samantha Rh5DG225900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 311
AccII CGCG 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 66
AciI CCGC 5 cut(s) 221, 311, 314, 341, 347
AclWI GGATC 3 cut(s) 58, 71, 113
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 423
AfeI AGCGCT 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 14, 154
AgeI ACCGGT 1 cut(s) 454
AluBI AGCT 2 cut(s) 198, 236
AluI AGCT 2 cut(s) 198, 236
AlwI GGATC 3 cut(s) 58, 71, 113
Aor13HI TCCGGA 1 cut(s) 66
Aor51HI AGCGCT 1 cut(s) 168
AoxI GGCC 3 cut(s) 17, 145, 446
ApeKI GCWGC 3 cut(s) 218, 359, 391
ApoI RAATTY 1 cut(s) 249
AsiGI ACCGGT 1 cut(s) 454
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 17, 447
AsuHPI GGTGA 2 cut(s) 169, 278
BamHI GGATCC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 205, 371, 378
BccI CCATC 3 cut(s) 19, 81, 435
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 5 cut(s) 219, 312, 315, 360, 392
BlsI GCNGC 5 cut(s) 220, 313, 316, 361, 393
BmgT120I GGNCC 2 cut(s) 17, 447
BmiI GGNNCC 3 cut(s) 18, 65, 431
BmsI GCATC 3 cut(s) 138, 145, 453
BsaJI CCNNGG 3 cut(s) 8, 95, 493
BsaWI WCCGGW 2 cut(s) 66, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 154
Bse118I RCCGGY 2 cut(s) 283, 454
BseAI TCCGGA 1 cut(s) 66
BseDI CCNNGG 3 cut(s) 8, 95, 493
BseGI GGATG 3 cut(s) 92, 388, 489
BseLI CCNNNNNNNGG 2 cut(s) 14, 154
BseXI GCAGC 3 cut(s) 205, 371, 378
BseYI CCCAGC 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 3 cut(s) 19, 147, 448
BshTI ACCGGT 1 cut(s) 454
BsiSI CCGG 3 cut(s) 67, 284, 455
BslI CCNNNNNNNGG 2 cut(s) 14, 154
BsnI GGCC 3 cut(s) 19, 147, 448
Bsp13I TCCGGA 1 cut(s) 66
Bsp143I GATC 3 cut(s) 44, 63, 105
Bsp19I CCATGG 2 cut(s) 8, 493
BspACI CCGC 5 cut(s) 221, 311, 314, 341, 347
BspANI GGCC 3 cut(s) 19, 147, 448
BspEI TCCGGA 1 cut(s) 66
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 3 cut(s) 18, 65, 431
BspPI GGATC 3 cut(s) 58, 71, 113
BsrBI CCGCTC 1 cut(s) 311
BsrFI RCCGGY 2 cut(s) 283, 454
BssAI RCCGGY 2 cut(s) 283, 454
BssECI CCNNGG 3 cut(s) 8, 95, 493
BssMI GATC 3 cut(s) 44, 63, 105
BssT1I CCWWGG 2 cut(s) 8, 493
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 285
BstDSI CCRYGG 2 cut(s) 8, 493
BstF5I GGATG 3 cut(s) 92, 388, 489
BstFNI CGCG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 47, 66, 108
BstMBI GATC 3 cut(s) 44, 63, 105
BstMWI GCNNNNNNNGC 2 cut(s) 224, 233
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 205, 371, 378
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 3 cut(s) 19, 147, 448
BtgI CCRYGG 2 cut(s) 8, 493
BtsCI GGATG 3 cut(s) 92, 388, 489
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 285
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 2 cut(s) 283, 454
Cfr13I GGNCC 2 cut(s) 17, 447
CseI GACGC 1 cut(s) 353
CspAI ACCGGT 1 cut(s) 454
CviAII CATG 3 cut(s) 9, 133, 494
DpnI GATC 3 cut(s) 46, 65, 107
DpnII GATC 3 cut(s) 44, 63, 105
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 8, 493
Eco32I GATATC 1 cut(s) 484
Eco47III AGCGCT 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 249
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 8, 493
EcoT22I ATGCAT 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 8, 493
FaeI CATG 3 cut(s) 12, 136, 497
FaiI YATR 9 cut(s) 10, 114, 122, 134, 184, 203, 277, 302, 495
FatI CATG 3 cut(s) 8, 132, 493
Fnu4HI GCNGC 5 cut(s) 219, 312, 315, 360, 392
FokI GGATG 3 cut(s) 99, 395, 476
Fsp4HI GCNGC 5 cut(s) 219, 312, 315, 360, 392
GlaI GCGC 1 cut(s) 168
GluI GCNGC 5 cut(s) 219, 312, 315, 360, 392
GsaI CCCAGC 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 3 cut(s) 19, 147, 448
HapII CCGG 3 cut(s) 67, 284, 455
HgaI GACGC 1 cut(s) 353
HhaI GCGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 12, 136, 497
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 196
HpaII CCGG 3 cut(s) 67, 284, 455
HphI GGTGA 2 cut(s) 169, 278
Hpy188I TCNGA 2 cut(s) 110, 173
Hpy188III TCNNGA 3 cut(s) 67, 401, 438
HpyAV CCTTC 2 cut(s) 398, 405
HpyCH4V TGCA 4 cut(s) 4, 136, 179, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 233
Hsp92II CATG 3 cut(s) 12, 136, 497
HspAI GCGC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 66
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Kzo9I GATC 3 cut(s) 44, 63, 105
LmnI GCTCC 2 cut(s) 174, 429
LpnPI CCDG 7 cut(s) 67, 80, 213, 297, 414, 468, 486
Lsp1109I GCAGC 3 cut(s) 205, 371, 378
LweI GCATC 3 cut(s) 138, 145, 453
MaeIII GTNAC 1 cut(s) 204
MalI GATC 3 cut(s) 46, 65, 107
MbiI CCGCTC 1 cut(s) 311
MboI GATC 3 cut(s) 44, 63, 105
MboII GAAGA 2 cut(s) 64, 112
MfeI CAATTG 2 cut(s) 318, 420
MflI RGATCY 1 cut(s) 63
MluCI AATT 4 cut(s) 141, 249, 318, 420
MnlI CCTC 9 cut(s) 6, 90, 96, 109, 148, 217, 373, 438, 497
Mph1103I ATGCAT 1 cut(s) 138
MroI TCCGGA 1 cut(s) 66
MroNI GCCGGC 1 cut(s) 283
MspI CCGG 3 cut(s) 67, 284, 455
MunI CAATTG 2 cut(s) 318, 420
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 224, 233
NaeI GCCGGC 1 cut(s) 285
NcoI CCATGG 2 cut(s) 8, 493
NdeII GATC 3 cut(s) 44, 63, 105
NgoMIV GCCGGC 1 cut(s) 283
NlaIII CATG 3 cut(s) 12, 136, 497
NlaIV GGNNCC 3 cut(s) 18, 65, 431
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 347
PinAI ACCGGT 1 cut(s) 454
PkrI GCNGC 5 cut(s) 220, 313, 316, 361, 393
PspFI CCCAGC 1 cut(s) 500
PspN4I GGNNCC 3 cut(s) 18, 65, 431
PspPI GGNCC 2 cut(s) 17, 447
PsuI RGATCY 1 cut(s) 63
PsyI GACNNNGTC 1 cut(s) 347
SatI GCNGC 5 cut(s) 219, 312, 315, 360, 392
Sau3AI GATC 3 cut(s) 44, 63, 105
Sau96I GGNCC 2 cut(s) 17, 447
SetI ASST 4 cut(s) 120, 159, 200, 238
SfaNI GCATC 3 cut(s) 138, 145, 453
Sse9I AATT 4 cut(s) 141, 249, 318, 420
SsiI CCGC 5 cut(s) 221, 311, 314, 341, 347
StyI CCWWGG 2 cut(s) 8, 493
TaqI TCGA 2 cut(s) 247, 461
TasI AATT 4 cut(s) 141, 249, 318, 420
TauI GCSGC 2 cut(s) 314, 317
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 3 cut(s) 218, 359, 391
Tsp45I GTSAC 1 cut(s) 204
TspRI CASTG 1 cut(s) 369
Tth111I GACNNNGTC 1 cut(s) 347
XapI RAATTY 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.