Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019343

Physical Location & Seq

Genomic Coordinates Reverse (-)

34638315 .. 34641162

Gene Structure 2848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCACCGAATTACCGGTATGGCGGTGGATTTGAGTTGGGCATTGATTTTGGGACATGAGTTTCTAGAGGTGGCTGGTCCGACCGGAATAGAGAAGATCGGCGGTGCTTGGCGGCTTCTTGCTCTTCGTTGCGTGAAAGCCAAGATTGGGAAGCTGCTGTTAACTGTTGTCAGCGAGCTCTTATTATTTGCACTTTCAGTTTTGACACCTCCACATTTGTGTCATTTGAAGAACTATGTATTGGTGGAGCTATCAGTCAGGTTTCCTGTTTCGGGGAGCTCATCTCCAGGACCTTCCAATACCAAAGTTTTTAGTCATTTTGTCAGCATGGGATTTTCTCAAAAAATGGTTGCCAAAGCTATCCAGGAACATGCTGAGGAAGACGCCGATTCAATCCTTTACATCATTGGGGTAGTGTTTACAATGTCAGATTGTCAGTTAGATATCTTACAGTATGGAGAAAACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

156

Amino Acids

17.04

Weight (kDa)

6.04

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019343)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323151
rosa_laevigata	RLG00000019405
rosa_multiflora	Rmu_sc0009428.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012700 Rroxscaffold_2G00079930 Rroxscaffold_5G00371700 Rroxscaffold_6G00412040
rosa_samantha	Rh5DG225900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	23, 102, 112
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	147, 272
AgeI	ACCGGT	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	229, 393
AjnI	CCWGG	2 cut(s)	286, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AleI	CACNNNNGTG	1 cut(s)	217
AluBI	AGCT	5 cut(s)	154, 178, 250, 279, 359
AluI	AGCT	5 cut(s)	154, 178, 250, 279, 359
Alw21I	GWGCWC	2 cut(s)	180, 281
ApeKI	GCWGC	1 cut(s)	154
AsiGI	ACCGGT	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	77, 290
AvaII	GGWCC	2 cut(s)	77, 290
BanII	GRGCYC	2 cut(s)	180, 281
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	180, 281
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	141
BciT130I	CCWGG	2 cut(s)	288, 365
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	113, 155
BlsI	GCNGC	2 cut(s)	114, 156
Bme1390I	CCNGG	2 cut(s)	288, 365
Bme18I	GGWCC	2 cut(s)	77, 290
BmgT120I	GGNCC	2 cut(s)	77, 290
BmrFI	CCNGG	2 cut(s)	288, 365
BpiI	GAAGAC	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BpmI	CTGGAG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	384
BsaWI	WCCGGW	2 cut(s)	14, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 272
Bse118I	RCCGGY	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	288, 365
BseLI	CCNNNNNNNGG	2 cut(s)	147, 272
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	84
BshTI	ACCGGT	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	2 cut(s)	180, 281
BsiSI	CCGG	2 cut(s)	15, 84
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	147, 272
BsmFI	GGGAC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	180, 281
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	3 cut(s)	23, 102, 112
BspCNI	CTCAG	1 cut(s)	367
BspQI	GCTCTTC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssMI	GATC	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	288, 365
Bst4CI	ACNGT	2 cut(s)	166, 453
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	375
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	84
BstNI	CCWGG	2 cut(s)	288, 365
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	286, 363
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	77, 290
CseI	GACGC	1 cut(s)	392
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	3 cut(s)	56, 328, 371
CviJI	RGCY	8 cut(s)	74, 115, 140, 154, 178, 250, 279, 359
CviKI_1	RGCY	8 cut(s)	74, 115, 140, 154, 178, 250, 279, 359
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	2 cut(s)	178, 279
Eco24I	GRGCYC	2 cut(s)	180, 281
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	77, 290
Eco53kI	GAGCTC	2 cut(s)	178, 279
EcoICRI	GAGCTC	2 cut(s)	178, 279
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	286, 363
EcoRV	GATATC	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	180, 281
FaeI	CATG	3 cut(s)	59, 331, 374
FaiI	YATR	6 cut(s)	20, 57, 237, 329, 372, 456
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	3 cut(s)	55, 327, 370
Fnu4HI	GCNGC	2 cut(s)	113, 155
FriOI	GRGCYC	2 cut(s)	180, 281
Fsp4HI	GCNGC	2 cut(s)	113, 155
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	113, 155
GsuI	CTGGAG	1 cut(s)	270
HapII	CCGG	2 cut(s)	15, 84
HgaI	GACGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	59, 331, 374
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	1 cut(s)	389
HpaI	GTTAAC	1 cut(s)	162
HpaII	CCGG	2 cut(s)	15, 84
Hpy166II	GTNNAC	2 cut(s)	162, 420
Hpy188I	TCNGA	2 cut(s)	81, 430
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	162, 420
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	2 cut(s)	166, 453
HpyCH4V	TGCA	2 cut(s)	4, 191
HpyF3I	CTNAG	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	59, 331, 374
KspAI	GTTAAC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	96
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	247, 276
LpnPI	CCDG	9 cut(s)	28, 60, 97, 244, 273, 279, 300, 350, 377
Lsp1109I	GCAGC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	65
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	4 cut(s)	106, 116, 241, 392
MhlI	GDGCHC	2 cut(s)	180, 281
MluCI	AATT	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	3 cut(s)	61, 219, 370
MseI	TTAA	2 cut(s)	161, 469
MslI	CAYNNNNRTG	1 cut(s)	217
MspI	CCGG	2 cut(s)	15, 84
MspR9I	CCNGG	2 cut(s)	288, 365
MvaI	CCWGG	2 cut(s)	288, 365
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	59, 331, 374
NspI	RCATGY	1 cut(s)	374
OliI	CACNNNNGTG	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	389
PfoI	TCCNGGA	2 cut(s)	286, 363
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	114, 156
PpuMI	RGGWCCY	1 cut(s)	290
Psp124BI	GAGCTC	2 cut(s)	180, 281
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	2 cut(s)	286, 363
PspGI	CCWGG	2 cut(s)	286, 363
PspPI	GGNCC	2 cut(s)	77, 290
PspPPI	RGGWCCY	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	217
SacI	GAGCTC	2 cut(s)	180, 281
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	161, 469
SatI	GCNGC	2 cut(s)	113, 155
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	2 cut(s)	77, 290
ScrFI	CCNGG	2 cut(s)	288, 365
SduI	GDGCHC	2 cut(s)	180, 281
SetI	ASST	9 cut(s)	72, 156, 180, 211, 252, 263, 281, 295, 361
SinI	GGWCC	2 cut(s)	77, 290
SmiMI	CAYNNNNRTG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	3 cut(s)	23, 102, 112
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	2 cut(s)	180, 281
StyD4I	CCNGG	2 cut(s)	286, 363
TaaI	ACNGT	2 cut(s)	166, 453
TasI	AATT	1 cut(s)	9
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	161, 469
Tru9I	TTAA	2 cut(s)	161, 469
TseI	GCWGC	1 cut(s)	154
VpaK11BI	GGWCC	2 cut(s)	77, 290
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.