Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009428.1

Orthogroup ID

OG0019343

Physical Location & Seq

Genomic Coordinates Forward (+)

25588 .. 26909

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009428.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgtttatatatcctgttaaggatggaattacatctggggtagacggtgatgatgttgactgggatactgaagatgagtttgagattgaaaacctcactttatcttcttcagctgatccaggctctggggaggctagctcatcatcaggaccttcccaaaccaaagtttctgatcattttgtcagcatgggattttctcataatatggttgccaaagccatccaagaacatggacttgaagatgcagattcaattcttgaaaccctcctcttatataacactagcaaaagttacccgcgctttgctgcgggtttgctttcttgtgtgataaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

111

Amino Acids

11.91

Weight (kDa)

4.18

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019343)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323151
rosa_laevigata	RLG00000019405
rosa_multiflora	Rmu_sc0009428.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012700 Rroxscaffold_2G00079930 Rroxscaffold_5G00371700 Rroxscaffold_6G00412040
rosa_samantha	Rh5DG225900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	298
AciI	CCGC	2 cut(s)	296, 308
AclWI	GGATC	1 cut(s)	110
AcuI	CTGAAG	2 cut(s)	90, 93
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	4 cut(s)	89, 239, 252, 260
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	2 cut(s)	113, 138
AluI	AGCT	2 cut(s)	113, 138
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	17, 227
BciT130I	CCWGG	1 cut(s)	120
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	172
BfaI	CTAG	2 cut(s)	135, 282
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	232
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	28, 219
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	115, 172
BspACI	CCGC	2 cut(s)	296, 308
BspFNI	CGCG	1 cut(s)	298
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	65
BssMI	GATC	2 cut(s)	115, 172
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	28, 219
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	2 cut(s)	118, 175
BstMBI	GATC	2 cut(s)	115, 172
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	28, 219
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	149
CviAII	CATG	2 cut(s)	187, 230
CviJI	RGCY	5 cut(s)	113, 123, 134, 138, 218
CviKI_1	RGCY	5 cut(s)	113, 123, 134, 138, 218
DpnI	GATC	2 cut(s)	117, 174
DpnII	GATC	2 cut(s)	115, 172
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	90, 93
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	190, 233
FaiI	YATR	8 cut(s)	8, 10, 188, 201, 206, 231, 274, 276
FatI	CATG	2 cut(s)	186, 229
FauI	CCCGC	2 cut(s)	301, 303
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	2 cut(s)	35, 206
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	2 cut(s)	135, 282
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	190, 233
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	43, 58
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	147, 257
Hpy8I	GTNNAC	2 cut(s)	43, 58
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	190, 233
HspAI	GCGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	115, 172
LpnPI	CCDG	7 cut(s)	21, 27, 46, 105, 111, 132, 132
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	135, 282
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	2 cut(s)	117, 174
MboI	GATC	2 cut(s)	115, 172
MboII	GAAGA	4 cut(s)	83, 96, 99, 251
MluCI	AATT	2 cut(s)	27, 252
MnlI	CCTC	4 cut(s)	104, 124, 275, 278
MseI	TTAA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	298
NdeII	GATC	2 cut(s)	115, 172
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	190, 233
PfeI	GAWTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	115, 172
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	4 cut(s)	96, 115, 140, 154
SfaNI	GCATC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	27, 252
SsiI	CCGC	2 cut(s)	296, 308
SspMI	CTAG	2 cut(s)	135, 282
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	2 cut(s)	27, 252
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	1 cut(s)	305
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	2 cut(s)	135, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.