No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0323151 |
| rosa_laevigata | RLG00000019405 |
| rosa_multiflora | Rmu_sc0009428.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00012700 Rroxscaffold_2G00079930 Rroxscaffold_5G00371700 Rroxscaffold_6G00412040 |
| rosa_samantha | Rh5DG225900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 498 |
| AciI | CCGC | 3 cut(s) | 418, 445, 487 |
| AclWI | GGATC | 1 cut(s) | 501 |
| AcyI | GRCGYC | 1 cut(s) | 372 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 12, 60 |
| AgsI | TTSAA | 1 cut(s) | 235 |
| AjnI | CCWGG | 1 cut(s) | 482 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 202, 234 |
| AluBI | AGCT | 3 cut(s) | 67, 425, 554 |
| AluI | AGCT | 3 cut(s) | 67, 425, 554 |
| Alw26I | GTCTC | 2 cut(s) | 197, 246 |
| AlwI | GGATC | 1 cut(s) | 501 |
| AoxI | GGCC | 3 cut(s) | 3, 324, 378 |
| AspS9I | GGNCC | 2 cut(s) | 324, 378 |
| AsuC2I | CCSGG | 1 cut(s) | 208 |
| AsuHPI | GGTGA | 1 cut(s) | 284 |
| BceAI | ACGGC | 1 cut(s) | 385 |
| BciT130I | CCWGG | 1 cut(s) | 484 |
| BcnI | CCSGG | 1 cut(s) | 208 |
| BcoDI | GTCTC | 2 cut(s) | 197, 246 |
| BfaI | CTAG | 2 cut(s) | 461, 562 |
| BfmI | CTRYAG | 1 cut(s) | 214 |
| BisI | GCNGC | 1 cut(s) | 419 |
| BlsI | GCNGC | 1 cut(s) | 420 |
| Bme1390I | CCNGG | 2 cut(s) | 208, 484 |
| BmgT120I | GGNCC | 2 cut(s) | 324, 378 |
| BmrFI | CCNGG | 2 cut(s) | 208, 484 |
| BmsI | GCATC | 1 cut(s) | 142 |
| BpuEI | CTTGAG | 1 cut(s) | 28 |
| BpuMI | CCSGG | 1 cut(s) | 208 |
| BsaHI | GRCGYC | 1 cut(s) | 372 |
| BsaI | GGTCTC | 2 cut(s) | 197, 246 |
| BsaJI | CCNNGG | 1 cut(s) | 178 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 12, 60 |
| BseBI | CCWGG | 1 cut(s) | 484 |
| BseDI | CCNNGG | 1 cut(s) | 178 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 12, 60 |
| BseMII | CTCAG | 2 cut(s) | 378, 550 |
| BseRI | GAGGAG | 1 cut(s) | 195 |
| Bsh1236I | CGCG | 1 cut(s) | 498 |
| BshFI | GGCC | 3 cut(s) | 5, 326, 380 |
| BsiSI | CCGG | 1 cut(s) | 207 |
| BslFI | GGGAC | 1 cut(s) | 271 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 12, 60 |
| BsmAI | GTCTC | 2 cut(s) | 197, 246 |
| BsmFI | GGGAC | 1 cut(s) | 271 |
| BsnI | GGCC | 3 cut(s) | 5, 326, 380 |
| Bso31I | GGTCTC | 2 cut(s) | 197, 246 |
| Bsp143I | GATC | 5 cut(s) | 193, 390, 493, 544, 558 |
| BspACI | CCGC | 3 cut(s) | 418, 445, 487 |
| BspANI | GGCC | 3 cut(s) | 5, 326, 380 |
| BspCNI | CTCAG | 2 cut(s) | 379, 549 |
| BspFNI | CGCG | 1 cut(s) | 498 |
| BspPI | GGATC | 1 cut(s) | 501 |
| BspTNI | GGTCTC | 2 cut(s) | 197, 246 |
| BssECI | CCNNGG | 1 cut(s) | 178 |
| BssMI | GATC | 5 cut(s) | 193, 390, 493, 544, 558 |
| BssNI | GRCGYC | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 1 cut(s) | 484 |
| Bst4CI | ACNGT | 1 cut(s) | 72 |
| BstACI | GRCGYC | 1 cut(s) | 372 |
| BstC8I | GCNNGC | 2 cut(s) | 268, 423 |
| BstDEI | CTNAG | 2 cut(s) | 387, 536 |
| BstFNI | CGCG | 1 cut(s) | 498 |
| BstKTI | GATC | 5 cut(s) | 196, 393, 496, 547, 561 |
| BstMAI | GTCTC | 2 cut(s) | 197, 246 |
| BstMBI | GATC | 5 cut(s) | 193, 390, 493, 544, 558 |
| BstNI | CCWGG | 1 cut(s) | 484 |
| BstSCI | CCNGG | 2 cut(s) | 206, 482 |
| BstSFI | CTRYAG | 1 cut(s) | 214 |
| BstUI | CGCG | 1 cut(s) | 498 |
| BsuRI | GGCC | 3 cut(s) | 5, 326, 380 |
| Cac8I | GCNNGC | 2 cut(s) | 268, 423 |
| Cfr13I | GGNCC | 2 cut(s) | 324, 378 |
| CseI | GACGC | 2 cut(s) | 361, 439 |
| CviJI | RGCY | 9 cut(s) | 5, 53, 67, 188, 270, 326, 380, 425, 554 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 53, 67, 188, 270, 326, 380, 425, 554 |
| DdeI | CTNAG | 2 cut(s) | 387, 536 |
| DpnI | GATC | 5 cut(s) | 195, 392, 495, 546, 560 |
| DpnII | GATC | 5 cut(s) | 193, 390, 493, 544, 558 |
| EciI | GGCGGA | 1 cut(s) | 502 |
| Eco31I | GGTCTC | 2 cut(s) | 197, 246 |
| EcoO109I | RGGNCCY | 1 cut(s) | 378 |
| EcoRII | CCWGG | 1 cut(s) | 482 |
| FaiI | YATR | 3 cut(s) | 216, 273, 415 |
| FaqI | GGGAC | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 1 cut(s) | 419 |
| Fsp4HI | GCNGC | 1 cut(s) | 419 |
| FspBI | CTAG | 2 cut(s) | 461, 562 |
| GluI | GCNGC | 1 cut(s) | 419 |
| HaeIII | GGCC | 3 cut(s) | 5, 326, 380 |
| HapII | CCGG | 1 cut(s) | 207 |
| HgaI | GACGC | 2 cut(s) | 361, 439 |
| Hin1I | GRCGYC | 1 cut(s) | 372 |
| HincII | GTYRAC | 2 cut(s) | 75, 367 |
| HindII | GTYRAC | 2 cut(s) | 75, 367 |
| HinfI | GANTC | 3 cut(s) | 314, 319, 474 |
| HpaI | GTTAAC | 1 cut(s) | 75 |
| HpaII | CCGG | 1 cut(s) | 207 |
| HphI | GGTGA | 1 cut(s) | 284 |
| Hpy166II | GTNNAC | 2 cut(s) | 75, 367 |
| Hpy188I | TCNGA | 7 cut(s) | 179, 305, 352, 388, 395, 473, 558 |
| Hpy188III | TCNNGA | 3 cut(s) | 19, 243, 256 |
| Hpy8I | GTNNAC | 2 cut(s) | 75, 367 |
| HpyAV | CCTTC | 2 cut(s) | 192, 355 |
| HpyCH4III | ACNGT | 1 cut(s) | 72 |
| HpyCH4V | TGCA | 2 cut(s) | 104, 133 |
| HpyF3I | CTNAG | 2 cut(s) | 387, 536 |
| Hsp92I | GRCGYC | 1 cut(s) | 372 |
| KspAI | GTTAAC | 1 cut(s) | 75 |
| Kzo9I | GATC | 5 cut(s) | 193, 390, 493, 544, 558 |
| LmnI | GCTCC | 1 cut(s) | 559 |
| LpnPI | CCDG | 7 cut(s) | 220, 252, 361, 391, 469, 496, 523 |
| LweI | GCATC | 1 cut(s) | 142 |
| MaeI | CTAG | 2 cut(s) | 461, 562 |
| MalI | GATC | 5 cut(s) | 195, 392, 495, 546, 560 |
| MboI | GATC | 5 cut(s) | 193, 390, 493, 544, 558 |
| MboII | GAAGA | 1 cut(s) | 239 |
| MluCI | AATT | 2 cut(s) | 230, 410 |
| MlyI | GAGTC | 1 cut(s) | 308 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MnlI | CCTC | 7 cut(s) | 5, 36, 132, 173, 346, 351, 389 |
| MseI | TTAA | 1 cut(s) | 74 |
| MspI | CCGG | 1 cut(s) | 207 |
| MspR9I | CCNGG | 2 cut(s) | 208, 484 |
| MvaI | CCWGG | 1 cut(s) | 484 |
| MvnI | CGCG | 1 cut(s) | 498 |
| NciI | CCSGG | 1 cut(s) | 208 |
| NdeII | GATC | 5 cut(s) | 193, 390, 493, 544, 558 |
| PfeI | GAWTC | 2 cut(s) | 319, 474 |
| PflFI | GACNNNGTC | 2 cut(s) | 346, 371 |
| PkrI | GCNGC | 1 cut(s) | 420 |
| PleI | GAGTC | 1 cut(s) | 308 |
| PpsI | GAGTC | 1 cut(s) | 308 |
| Psp6I | CCWGG | 1 cut(s) | 482 |
| PspGI | CCWGG | 1 cut(s) | 482 |
| PspPI | GGNCC | 2 cut(s) | 324, 378 |
| PsyI | GACNNNGTC | 2 cut(s) | 346, 371 |
| SaqAI | TTAA | 1 cut(s) | 74 |
| SatI | GCNGC | 1 cut(s) | 419 |
| Sau3AI | GATC | 5 cut(s) | 193, 390, 493, 544, 558 |
| Sau96I | GGNCC | 2 cut(s) | 324, 378 |
| SchI | GAGTC | 1 cut(s) | 308 |
| ScrFI | CCNGG | 2 cut(s) | 208, 484 |
| SetI | ASST | 7 cut(s) | 28, 69, 124, 366, 427, 542, 556 |
| SfaNI | GCATC | 1 cut(s) | 142 |
| SfcI | CTRYAG | 1 cut(s) | 214 |
| SmlI | CTYRAG | 1 cut(s) | 7 |
| SmoI | CTYRAG | 1 cut(s) | 7 |
| Sse9I | AATT | 2 cut(s) | 230, 410 |
| SsiI | CCGC | 3 cut(s) | 418, 445, 487 |
| SspMI | CTAG | 2 cut(s) | 461, 562 |
| StyD4I | CCNGG | 2 cut(s) | 206, 482 |
| TaaI | ACNGT | 1 cut(s) | 72 |
| TaqI | TCGA | 6 cut(s) | 20, 196, 244, 317, 341, 547 |
| TasI | AATT | 2 cut(s) | 230, 410 |
| TauI | GCSGC | 1 cut(s) | 421 |
| TfiI | GAWTC | 2 cut(s) | 319, 474 |
| Tru1I | TTAA | 1 cut(s) | 74 |
| Tru9I | TTAA | 1 cut(s) | 74 |
| TspDTI | ATGAA | 1 cut(s) | 210 |
| TspGWI | ACGGA | 1 cut(s) | 506 |
| Tth111I | GACNNNGTC | 2 cut(s) | 346, 371 |
| XspI | CTAG | 2 cut(s) | 461, 562 |