RLG00000019428

plant mutator transposase zinc finger

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
51953301 .. 51956444
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019428

Sequence Viewer

Length: 1146 bp
ATGCGATGGGGACTGAGAGTCCTAATCGTGGACGACGATGACGGCGAAGGTGACGATGATGTCGATGAAGATGACGTGGCCAAAACCAACCAGAGGACCTCGTCGGCCGGCCAAACCCTCACTTTCCGGAGCTACCCATCTTCTCATCGGATCCTGTTGGTCTCTGAAATTGTTTGTTTATTGAACTTGAAAGAGCCCGACTGCAATGAGATTGCAACTGATGGAGATGGTGTTTTGACAGAATTGGATGCTGAAAATCGTGTCCCAGAAGGAAAAAAGGAATTTGTTGCGCCTGCTATTGGAATGGAGTTTGAGTCCAGTCAAGGTTTCAAAAGAATTAAAGATGTGAACCGTTTGAGAAAGGAAACAAGAACTGGCTGTCCTGCAATGTTAAGGATGAGGTTAGTGGACTCCAAAAGGTGGAGGGTACTTGAAGTTGCGCTTGAACATAACCACTTATTAGGTACAAAGATCTACAAATCGATGAGAAAAATGGGAAGTGGAACAAAGAGGAAGTCACAGTCAAGTTCAGATGCAGAAAAGCGAACAATTAAGCTGTACCGAGCACTTGTGATAGATTCAGGGGGTAATGGACCCTCGAATTTGAATGCAACAGAAGCCAGGAATGATATTCCCAATCAGTTGAACCTCAAAAAAGTGGAGGAGATGTATTCTTGTTTTAGCACTACACAGTTGCACATTGATGGGCCAATTGTAATATTCTTGGTCAAGGAGCGTGTTGTGGCAGATGGGAATCGGCGAGAGATAAGAGATTATGAAGTTCTGTACAACAGAACAGCAGGTGAGGTTCGTTGTATCTGCAGTTGCTTTAACTTCCATGGGTATCTATGCCGGCATGCTTTGTGTGTCCTTAATTTTAATGGAGTGGAGGAGATCCCTTCCAAGTACATTCTGTCACGATGGAAAAAGGATTACAAGCGTTTATATATTCCAGATCATGGCTCCAATAATGTCGATGTTACTGACCGTATGCAGTGGTTCAGTCAGTTGTATAGAAGTGCCTTGCAAATTGTAGAGGAAGGTGTGATCTCTCTTGACCATTACAATGTAGCATTGCAAGCATTTGAAGAGTCTTTGAAAAGGGTTCACGAGATAGAAGACAAGCATGAGCCTGAAAACTTGTAA

Protein Analysis

382

Amino Acids

43.59

Weight (kDa)

6.12

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 108 - 154 2.1e-09 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011646)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 791
AasI GACNNNNNNGTC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 791
AccB7I CCANNNNNTGG 2 cut(s) 420, 959
AccIII TCCGGA 1 cut(s) 126
AclWI GGATC 3 cut(s) 145, 158, 889
AcoI YGGCCR 3 cut(s) 78, 105, 109
AcsI RAATTY 2 cut(s) 281, 601
AfaI GTAC 5 cut(s) 429, 466, 560, 788, 908
AfiI CCNNNNNNNGG 5 cut(s) 28, 93, 299, 420, 959
AgsI TTSAA 9 cut(s) 184, 190, 331, 434, 446, 607, 646, 1088, 1099
AhdI GACNNNNNGTC 1 cut(s) 17
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 620
AloI GAACNNNNNNTCC 2 cut(s) 364, 396
AluBI AGCT 2 cut(s) 132, 556
AluI AGCT 2 cut(s) 132, 556
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 3 cut(s) 145, 158, 889
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 4 cut(s) 78, 105, 109, 707
ApoI RAATTY 2 cut(s) 281, 601
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AspLEI GCGC 2 cut(s) 292, 442
AspS9I GGNCC 3 cut(s) 96, 593, 707
AsuHPI GGTGA 2 cut(s) 62, 815
AvaII GGWCC 2 cut(s) 96, 593
BalI TGGCCA 1 cut(s) 80
BamHI GGATCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 1109
BbsI GAAGAC 1 cut(s) 1125
Bbv12I GWGCWC 1 cut(s) 568
BccI CCATC 6 cut(s) 145, 215, 221, 698, 743, 915
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 622
BcoDI GTCTC 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 820
BfuAI ACCTGC 1 cut(s) 791
BglII AGATCT 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 622
Bme18I GGWCC 2 cut(s) 96, 593
BmeRI GACNNNNNGTC 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 96, 593, 707
BmiI GGNNCC 3 cut(s) 152, 595, 964
BmrFI CCNGG 1 cut(s) 622
BmsI GCATC 2 cut(s) 238, 523
BpiI GAAGAC 1 cut(s) 1125
Bsa29I ATCGAT 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 838
BsaWI WCCGGW 1 cut(s) 126
BsaXI ACNNNNNCTCC 6 cut(s) 216, 246, 299, 329, 653, 683
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 93, 299, 420, 959
Bse118I RCCGGY 2 cut(s) 107, 852
Bse1I ACTGG 2 cut(s) 318, 379
Bse3DI GCAATG 3 cut(s) 211, 393, 1073
Bse8I GATNNNNATC 1 cut(s) 753
BseAI TCCGGA 1 cut(s) 126
BseBI CCWGG 1 cut(s) 622
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 838
BseGI GGATG 2 cut(s) 253, 402
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 5 cut(s) 28, 93, 299, 420, 959
BseMI GCAATG 3 cut(s) 211, 393, 1073
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 2 cut(s) 318, 379
BseRI GAGGAG 2 cut(s) 677, 905
BseX3I CGGCCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 4 cut(s) 80, 107, 111, 709
BshVI ATCGAT 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 3 cut(s) 108, 127, 853
BslFI GGGAC 2 cut(s) 24, 248
BslI CCNNNNNNNGG 5 cut(s) 28, 93, 299, 420, 959
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 24, 248
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 4 cut(s) 80, 107, 111, 709
Bso31I GGTCTC 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 198, 568
Bsp13I TCCGGA 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 5 cut(s) 150, 471, 894, 955, 1047
Bsp19I CCATGG 1 cut(s) 838
BspANI GGCC 4 cut(s) 80, 107, 111, 709
BspCNI CTCAG 1 cut(s) 6
BspDI ATCGAT 1 cut(s) 482
BspEI TCCGGA 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 152, 595, 964
BspMAI CTGCAG 1 cut(s) 824
BspMI ACCTGC 1 cut(s) 791
BspPI GGATC 3 cut(s) 145, 158, 889
BspTNI GGTCTC 1 cut(s) 166
BsrDI GCAATG 3 cut(s) 211, 393, 1073
BsrFI RCCGGY 2 cut(s) 107, 852
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 2 cut(s) 318, 379
BssAI RCCGGY 2 cut(s) 107, 852
BssECI CCNNGG 1 cut(s) 838
BssMI GATC 5 cut(s) 150, 471, 894, 955, 1047
BssSI CACGAG 1 cut(s) 1109
BssT1I CCWWGG 1 cut(s) 838
Bst2BI CACGAG 1 cut(s) 1109
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 4 cut(s) 353, 522, 693, 989
Bst6I CTCTTC 1 cut(s) 1083
BstAUI TGTACA 1 cut(s) 786
BstC8I GCNNGC 5 cut(s) 109, 294, 854, 858, 1080
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 2 cut(s) 253, 402
BstHHI GCGC 2 cut(s) 292, 442
BstKTI GATC 5 cut(s) 153, 474, 897, 958, 1050
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 5 cut(s) 150, 471, 894, 955, 1047
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 617, 1079
BstNI CCWGG 1 cut(s) 622
BstNSI RCATGY 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 620
BstSFI CTRYAG 1 cut(s) 820
BstV2I GAAGAC 1 cut(s) 1125
BstX2I RGATCY 3 cut(s) 150, 471, 894
BstYI RGATCY 3 cut(s) 150, 471, 894
BstZI CGGCCG 1 cut(s) 105
Bsu15I ATCGAT 1 cut(s) 482
BsuRI GGCC 4 cut(s) 80, 107, 111, 709
BsuTUI ATCGAT 1 cut(s) 482
BtgI CCRYGG 1 cut(s) 838
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 253, 402
BtsI GCAGTG 1 cut(s) 1001
BtsIMutI CAGTG 1 cut(s) 1001
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 5 cut(s) 109, 294, 854, 858, 1080
CfoI GCGC 2 cut(s) 292, 442
Cfr10I RCCGGY 2 cut(s) 107, 852
Cfr13I GGNCC 3 cut(s) 96, 593, 707
ClaI ATCGAT 1 cut(s) 482
Csp6I GTAC 5 cut(s) 428, 465, 559, 787, 907
CviAII CATG 4 cut(s) 839, 857, 959, 1127
CviQI GTAC 5 cut(s) 428, 465, 559, 787, 907
DdeI CTNAG 1 cut(s) 14
DpnI GATC 5 cut(s) 152, 473, 896, 957, 1049
DpnII GATC 5 cut(s) 150, 471, 894, 955, 1047
DrdI GACNNNNNNGTC 1 cut(s) 59
DriI GACNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 3 cut(s) 78, 105, 109
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 1083
Eam1105I GACNNNNNGTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 1083
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 838
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 96, 593
Eco52I CGGCCG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 838
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 838
FaeI CATG 4 cut(s) 842, 860, 962, 1130
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 2 cut(s) 24, 248
FatI CATG 4 cut(s) 838, 856, 958, 1126
FokI GGATG 2 cut(s) 260, 409
FriOI GRGCYC 1 cut(s) 198
FseI GGCCGGCC 1 cut(s) 111
GlaI GCGC 2 cut(s) 291, 441
HaeIII GGCC 4 cut(s) 80, 107, 111, 709
HapII CCGG 3 cut(s) 108, 127, 853
HhaI GCGC 2 cut(s) 292, 442
Hin1II CATG 4 cut(s) 842, 860, 962, 1130
Hin6I GCGC 2 cut(s) 290, 440
HinP1I GCGC 2 cut(s) 290, 440
HinfI GANTC 6 cut(s) 18, 314, 410, 578, 754, 1091
HpaII CCGG 3 cut(s) 108, 127, 853
HphI GGTGA 2 cut(s) 62, 815
Hpy166II GTNNAC 4 cut(s) 31, 349, 409, 1108
Hpy188I TCNGA 3 cut(s) 150, 166, 532
Hpy188III TCNNGA 5 cut(s) 127, 918, 953, 1055, 1109
Hpy8I GTNNAC 4 cut(s) 31, 349, 409, 1108
Hpy99I CGWCG 2 cut(s) 38, 106
HpyAV CCTTC 4 cut(s) 41, 263, 909, 1034
HpyCH4III ACNGT 4 cut(s) 353, 522, 693, 989
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 2 cut(s) 617, 1079
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 842, 860, 962, 1130
HspAI GCGC 2 cut(s) 290, 440
Kpn2I TCCGGA 1 cut(s) 126
KroI GCCGGC 2 cut(s) 107, 852
KroNI GCCGGC 2 cut(s) 109, 854
Kzo9I GATC 5 cut(s) 150, 471, 894, 955, 1047
LmnI GCTCC 3 cut(s) 129, 733, 968
LweI GCATC 2 cut(s) 238, 523
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 4 cut(s) 50, 516, 915, 979
MalI GATC 5 cut(s) 152, 473, 896, 957, 1049
MboI GATC 5 cut(s) 150, 471, 894, 955, 1047
MboII GAAGA 4 cut(s) 80, 132, 1100, 1130
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 3 cut(s) 150, 471, 894
MhlI GDGCHC 2 cut(s) 198, 568
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 9 cut(s) 168, 242, 281, 336, 549, 601, 711, 874, 1029
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 4 cut(s) 27, 323, 404, 1100
Mox20I TGGCCA 1 cut(s) 80
MroI TCCGGA 1 cut(s) 126
MroNI GCCGGC 2 cut(s) 107, 852
MscI TGGCCA 1 cut(s) 80
MseI TTAA 6 cut(s) 339, 392, 552, 831, 873, 879
MslI CAYNNNNRTG 2 cut(s) 702, 1065
Msp20I TGGCCA 1 cut(s) 80
MspI CCGG 3 cut(s) 108, 127, 853
MspR9I CCNGG 1 cut(s) 622
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 1 cut(s) 622
MwoI GCNNNNNNNGC 2 cut(s) 617, 1079
NaeI GCCGGC 2 cut(s) 109, 854
NcoI CCATGG 1 cut(s) 838
NdeII GATC 5 cut(s) 150, 471, 894, 955, 1047
NgoMIV GCCGGC 2 cut(s) 107, 852
NlaIII CATG 4 cut(s) 842, 860, 962, 1130
NlaIV GGNNCC 3 cut(s) 152, 595, 964
NmuCI GTSAC 3 cut(s) 50, 516, 915
NspI RCATGY 1 cut(s) 860
PaeI GCATGC 1 cut(s) 860
PaqCI CACCTGC 1 cut(s) 791
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 42, 60
PctI GAATGC 1 cut(s) 613
PdiI GCCGGC 2 cut(s) 109, 854
PfeI GAWTC 2 cut(s) 578, 754
PflFI GACNNNGTC 1 cut(s) 100
PflMI CCANNNNNTGG 2 cut(s) 420, 959
PleI GAGTC 4 cut(s) 26, 322, 404, 1099
PpsI GAGTC 4 cut(s) 26, 322, 404, 1099
PpuMI RGGWCCY 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 620
PspN4I GGNNCC 3 cut(s) 152, 595, 964
PspPI GGNCC 3 cut(s) 96, 593, 707
PspPPI RGGWCCY 1 cut(s) 96
PstI CTGCAG 1 cut(s) 824
PsuI RGATCY 3 cut(s) 150, 471, 894
PsyI GACNNNGTC 1 cut(s) 100
RigI GGCCGGCC 1 cut(s) 111
RsaI GTAC 5 cut(s) 429, 466, 560, 788, 908
RsaNI GTAC 5 cut(s) 428, 465, 559, 787, 907
RseI CAYNNNNRTG 2 cut(s) 702, 1065
SaqAI TTAA 6 cut(s) 339, 392, 552, 831, 873, 879
Sau3AI GATC 5 cut(s) 150, 471, 894, 955, 1047
Sau96I GGNCC 3 cut(s) 96, 593, 707
SchI GAGTC 4 cut(s) 27, 323, 404, 1100
ScrFI CCNGG 1 cut(s) 622
SduI GDGCHC 2 cut(s) 198, 568
SfaNI GCATC 2 cut(s) 238, 523
SfcI CTRYAG 1 cut(s) 820
SinI GGWCC 2 cut(s) 96, 593
SmiMI CAYNNNNRTG 2 cut(s) 702, 1065
SphI GCATGC 1 cut(s) 860
Sse9I AATT 9 cut(s) 168, 242, 281, 336, 549, 601, 711, 874, 1029
SspI AATATT 1 cut(s) 720
StyD4I CCNGG 1 cut(s) 620
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 4 cut(s) 353, 522, 693, 989
TaiI ACGT 1 cut(s) 78
TaqI TCGA 4 cut(s) 63, 482, 599, 975
TasI AATT 9 cut(s) 168, 242, 281, 336, 549, 601, 711, 874, 1029
TatI WGTACW 2 cut(s) 786, 906
TfiI GAWTC 2 cut(s) 578, 754
Tru1I TTAA 6 cut(s) 339, 392, 552, 831, 873, 879
Tru9I TTAA 6 cut(s) 339, 392, 552, 831, 873, 879
TscAI CASTG 1 cut(s) 1001
TseFI GTSAC 3 cut(s) 50, 516, 915
Tsp45I GTSAC 3 cut(s) 50, 516, 915
TspDTI ATGAA 2 cut(s) 81, 792
TspRI CASTG 1 cut(s) 1001
Tth111I GACNNNGTC 1 cut(s) 100
Van91I CCANNNNNTGG 2 cut(s) 420, 959
VpaK11BI GGWCC 2 cut(s) 96, 593
XapI RAATTY 2 cut(s) 281, 601
XceI RCATGY 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.