Rmu_ssc0000401.1_g000001

plant mutator transposase zinc finger

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000401.1
Physical Location & Seq
Forward (+)
52 .. 1602
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000401.1_g000001.1.cds

Sequence Viewer

Length: 1551 bp
atgggaagtggaacaaagaggaagtcacagtcaagttcagatgcagaaaagcgaacaattaagctgtaccgagcacttgtgatagattcagggggtaatggaccctcgaattcgaatgcaacagaagccaggaatgatattcccaatcagttgaacctcaaaaaaggtgacacacaagcaatttataattacctttgtcgtatgcagttgacaaatccgaatttcttttacttgatggacatcaatgacgatgggcgtttgagaaatgtgttttggattgatgctaggtcgagggcagcatgcggttatttttgtgatgtgatatatattgacaacacatacttggcaaataaatttgagatcccacttgtggcgttagtggggataaatcaccatggtcaagcagtgttgcttggttgtgctttgcttgctggggagacggcagagtcttatatttggttgttcaaagcttggcttacatgtgtgtcaggacattctccgcaaacaattattactgacaggtgcaatgttttgcagagtgcagttgctgaggtgtttcctagctgccatcatcgttttggtttgtccctgatcattaaaaaagttccagaaaagttgggtggatcgcgcaattatgatgccattaggaagacactgcttaaagcagtttatgaaagtctgaaggtgattgaatttgaagcagcatggggattcatgattcagcattttggagttagtgatcatgagtggcttcgatctttgtatgaggaccgatttaggtgggctccagtttacttgaaagagacatcttttgccggaatgtcggctgcacatccaggtgaaaccttgagtccattttttgacaaatacgtacacaagcaaactccactgaaagaatttctggataagtatgaattggctctacaaaagaagcataaggaagaagctcttgcagatattgagtcgagaagctcaagtcccatgttgaaaaccagatgttcttttgagttgcagctttcaaaagtttacacaaaagagatattcaaaaaattccaatttgaagtggaggagatgtattcttgttttagcactacacagttgcacattgatgggccaattgtaatattcttggtcaaggagcgtgtcgtggcagatgggaatcggcgagagataagagattatgaggttctgtacaacagaacagcaggtgaggttcggtgtatctgcagttgctttaacttccatgggtatctatgccggcatgctttgtgtgtccttaattttaatggagtggaggagatcccttccaagtacattctgtcacgatggaaaaaggattacaagcgtttatatattccagatcatggctccaataatgtcgatgttactgaccgtatgcagtggttcagtcagctgtatagaagtgccttgcaaattgtagaggaaggtgtgatctctcttgaccattacaatgtagcattgcaagcatttgaagagtctttgaaaagggttcacgagatagaagacaagcatgagcctgaaaacttgtaa

Protein Analysis

516

Amino Acids

59.38

Weight (kDa)

7.24

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011646)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AarI CACCTGC 1 cut(s) 1196
AasI GACNNNNNNGTC 1 cut(s) 445
Acc36I ACCTGC 1 cut(s) 1196
AccB7I CCANNNNNTGG 1 cut(s) 1364
AccII CGCG 1 cut(s) 628
AciI CCGC 2 cut(s) 303, 500
AclWI GGATC 3 cut(s) 355, 631, 1294
AcsI RAATTY 6 cut(s) 109, 220, 353, 692, 896, 1049
AcuI CTGAAG 1 cut(s) 701
AfaI GTAC 4 cut(s) 68, 873, 1193, 1313
AfiI CCNNNNNNNGG 2 cut(s) 370, 1364
AflIII ACRYGT 1 cut(s) 479
AjnI CCWGG 2 cut(s) 128, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 7 cut(s) 64, 470, 564, 947, 972, 1015, 1414
AluI AGCT 7 cut(s) 64, 470, 564, 947, 972, 1015, 1414
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 431, 797
AlwI GGATC 3 cut(s) 355, 631, 1294
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 1 cut(s) 1112
ApeKI GCWGC 5 cut(s) 296, 564, 701, 827, 1012
ApoI RAATTY 6 cut(s) 109, 220, 353, 692, 896, 1049
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 3 cut(s) 101, 769, 1112
AsuHPI GGTGA 5 cut(s) 179, 383, 697, 851, 1220
AsuII TTCGAA 1 cut(s) 113
AvaII GGWCC 2 cut(s) 101, 769
BanII GRGCYC 1 cut(s) 787
BauI CACGAG 1 cut(s) 1514
BbsI GAAGAC 2 cut(s) 656, 1530
Bbv12I GWGCWC 1 cut(s) 76
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 5 cut(s) 308, 551, 713, 814, 1024
BccI CCATC 6 cut(s) 229, 245, 576, 1103, 1148, 1320
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 2 cut(s) 130, 837
BclI TGATCA 2 cut(s) 591, 739
BcoDI GTCTC 2 cut(s) 431, 797
BfaI CTAG 2 cut(s) 285, 561
BfmI CTRYAG 1 cut(s) 1225
BfuAI ACCTGC 1 cut(s) 1196
BisI GCNGC 5 cut(s) 297, 565, 702, 828, 1013
BlsI GCNGC 5 cut(s) 298, 566, 703, 829, 1014
Bme1390I CCNGG 2 cut(s) 130, 837
Bme18I GGWCC 2 cut(s) 101, 769
BmgT120I GGNCC 3 cut(s) 101, 769, 1112
BmiI GGNNCC 3 cut(s) 103, 786, 1369
BmrFI CCNGG 2 cut(s) 130, 837
BmsI GCATC 3 cut(s) 31, 271, 628
BpiI GAAGAC 2 cut(s) 656, 1530
BpmI CTGGAG 1 cut(s) 771
Bpu10I CCTNAGC 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 113
BpuEI CTTGAG 2 cut(s) 868, 958
BsaAI YACGTR 1 cut(s) 871
BsaBI GATNNNNATC 2 cut(s) 239, 1158
BsaJI CCNNGG 2 cut(s) 394, 1243
BsaXI ACNNNNNCTCC 2 cut(s) 1058, 1088
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 1364
Bse118I RCCGGY 1 cut(s) 1257
Bse1I ACTGG 1 cut(s) 788
Bse3DI GCAATG 2 cut(s) 532, 1478
Bse8I GATNNNNATC 2 cut(s) 239, 1158
BseBI CCWGG 2 cut(s) 130, 837
BseDI CCNNGG 2 cut(s) 394, 1243
BseGI GGATG 1 cut(s) 832
BseJI GATNNNNATC 2 cut(s) 239, 1158
BseLI CCNNNNNNNGG 2 cut(s) 370, 1364
BseMI GCAATG 2 cut(s) 532, 1478
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 1 cut(s) 788
BseRI GAGGAG 2 cut(s) 1082, 1310
BseXI GCAGC 5 cut(s) 308, 551, 713, 814, 1024
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 2 cut(s) 561, 813
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 1 cut(s) 1114
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 816, 1258
BslFI GGGAC 2 cut(s) 571, 963
BslI CCNNNNNNNGG 2 cut(s) 370, 1364
BsmAI GTCTC 2 cut(s) 431, 797
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 2 cut(s) 571, 963
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 1114
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 76, 787
Bsp1407I TGTACA 1 cut(s) 1191
Bsp143I GATC 8 cut(s) 360, 591, 623, 739, 755, 1299, 1360, 1452
Bsp19I CCATGG 2 cut(s) 394, 1243
BspACI CCGC 2 cut(s) 303, 500
BspANI GGCC 1 cut(s) 1114
BspCNI CTCAG 1 cut(s) 541
BspFNI CGCG 1 cut(s) 628
BspHI TCATGA 2 cut(s) 714, 742
BspLI GGNNCC 3 cut(s) 103, 786, 1369
BspMAI CTGCAG 1 cut(s) 1229
BspMI ACCTGC 1 cut(s) 1196
BspPI GGATC 3 cut(s) 355, 631, 1294
BspT104I TTCGAA 1 cut(s) 113
BsrDI GCAATG 2 cut(s) 532, 1478
BsrFI RCCGGY 1 cut(s) 1257
BsrGI TGTACA 1 cut(s) 1191
BsrI ACTGG 1 cut(s) 788
BssAI RCCGGY 1 cut(s) 1257
BssECI CCNNGG 2 cut(s) 394, 1243
BssMI GATC 8 cut(s) 360, 591, 623, 739, 755, 1299, 1360, 1452
BssSI CACGAG 1 cut(s) 1514
BssT1I CCWWGG 2 cut(s) 394, 1243
Bst2BI CACGAG 1 cut(s) 1514
Bst2UI CCWGG 2 cut(s) 130, 837
Bst4CI ACNGT 3 cut(s) 30, 1098, 1394
Bst6I CTCTTC 1 cut(s) 1488
BstAUI TGTACA 1 cut(s) 1191
BstBAI YACGTR 1 cut(s) 871
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 5 cut(s) 301, 429, 1259, 1263, 1485
BstDEI CTNAG 1 cut(s) 549
BstDSI CCRYGG 2 cut(s) 394, 1243
BstF5I GGATG 1 cut(s) 832
BstFNI CGCG 1 cut(s) 628
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 8 cut(s) 363, 594, 626, 742, 758, 1302, 1363, 1455
BstMAI GTCTC 2 cut(s) 431, 797
BstMBI GATC 8 cut(s) 360, 591, 623, 739, 755, 1299, 1360, 1452
BstMWI GCNNNNNNNGC 3 cut(s) 125, 428, 1484
BstNI CCWGG 2 cut(s) 130, 837
BstNSI RCATGY 3 cut(s) 303, 483, 1265
BstSCI CCNGG 2 cut(s) 128, 835
BstSFI CTRYAG 1 cut(s) 1225
BstSNI TACGTA 1 cut(s) 871
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 5 cut(s) 308, 551, 713, 814, 1024
BstV2I GAAGAC 2 cut(s) 656, 1530
BstX2I RGATCY 2 cut(s) 360, 1299
BstYI RGATCY 2 cut(s) 360, 1299
BsuRI GGCC 1 cut(s) 1114
BtgI CCRYGG 2 cut(s) 394, 1243
BtsCI GGATG 1 cut(s) 832
BtsI GCAGTG 3 cut(s) 411, 653, 1406
BtsIMutI CAGTG 4 cut(s) 411, 653, 887, 1406
BveI ACCTGC 1 cut(s) 1196
Cac8I GCNNGC 5 cut(s) 301, 429, 1259, 1263, 1485
CaiI CAGNNNCTG 1 cut(s) 548
CciI TCATGA 2 cut(s) 714, 742
CfoI GCGC 1 cut(s) 630
Cfr10I RCCGGY 1 cut(s) 1257
Cfr13I GGNCC 3 cut(s) 101, 769, 1112
Csp6I GTAC 4 cut(s) 67, 872, 1192, 1312
CviQI GTAC 4 cut(s) 67, 872, 1192, 1312
DdeI CTNAG 1 cut(s) 549
DpnI GATC 8 cut(s) 362, 593, 625, 741, 757, 1301, 1362, 1454
DpnII GATC 8 cut(s) 360, 591, 623, 739, 755, 1299, 1360, 1452
DrdI GACNNNNNNGTC 1 cut(s) 445
DseDI GACNNNNNNGTC 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 1488
EarI CTCTTC 1 cut(s) 1488
Eco105I TACGTA 1 cut(s) 871
Eco130I CCWWGG 2 cut(s) 394, 1243
Eco24I GRGCYC 1 cut(s) 787
Eco47I GGWCC 2 cut(s) 101, 769
Eco57I CTGAAG 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 128, 835
EcoT14I CCWWGG 2 cut(s) 394, 1243
EcoT38I GRGCYC 1 cut(s) 787
ErhI CCWWGG 2 cut(s) 394, 1243
Esp3I CGTCTC 1 cut(s) 431
FalI AAGNNNNNCTT 4 cut(s) 459, 491, 933, 965
FaqI GGGAC 2 cut(s) 571, 963
FbaI TGATCA 2 cut(s) 591, 739
Fnu4HI GCNGC 5 cut(s) 297, 565, 702, 828, 1013
FokI GGATG 1 cut(s) 819
FriOI GRGCYC 1 cut(s) 787
Fsp4HI GCNGC 5 cut(s) 297, 565, 702, 828, 1013
FspBI CTAG 2 cut(s) 285, 561
GlaI GCGC 1 cut(s) 629
GluI GCNGC 5 cut(s) 297, 565, 702, 828, 1013
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 771
HaeIII GGCC 1 cut(s) 1114
HapII CCGG 2 cut(s) 816, 1258
HhaI GCGC 1 cut(s) 630
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 8 cut(s) 86, 446, 711, 718, 850, 962, 1159, 1496
HpaII CCGG 2 cut(s) 816, 1258
HphI GGTGA 5 cut(s) 179, 383, 697, 851, 1220
Hpy166II GTNNAC 5 cut(s) 210, 793, 874, 1027, 1513
Hpy188I TCNGA 3 cut(s) 40, 219, 681
Hpy8I GTNNAC 5 cut(s) 210, 793, 874, 1027, 1513
HpyAV CCTTC 3 cut(s) 676, 1314, 1439
HpyCH4III ACNGT 3 cut(s) 30, 1098, 1394
HpyCH4IV ACGT 1 cut(s) 870
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 428, 1484
HpyF3I CTNAG 1 cut(s) 549
HpySE526I ACGT 1 cut(s) 870
HspAI GCGC 1 cut(s) 628
KroI GCCGGC 1 cut(s) 1257
KroNI GCCGGC 1 cut(s) 1259
Ksp22I TGATCA 2 cut(s) 591, 739
Kzo9I GATC 8 cut(s) 360, 591, 623, 739, 755, 1299, 1360, 1452
LmnI GCTCC 3 cut(s) 790, 1138, 1373
Lsp1109I GCAGC 5 cut(s) 308, 551, 713, 814, 1024
LweI GCATC 3 cut(s) 31, 271, 628
MaeI CTAG 2 cut(s) 285, 561
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 4 cut(s) 24, 167, 1320, 1384
MalI GATC 8 cut(s) 362, 593, 625, 741, 757, 1301, 1362, 1454
MboI GATC 8 cut(s) 360, 591, 623, 739, 755, 1299, 1360, 1452
MboII GAAGA 4 cut(s) 661, 953, 1505, 1535
MfeI CAATTG 1 cut(s) 1116
MflI RGATCY 2 cut(s) 360, 1299
MhlI GDGCHC 2 cut(s) 76, 787
MlyI GAGTC 4 cut(s) 455, 859, 971, 1505
MroNI GCCGGC 1 cut(s) 1257
MseI TTAA 6 cut(s) 60, 597, 660, 1236, 1278, 1284
MslI CAYNNNNRTG 3 cut(s) 837, 1107, 1470
MspA1I CMGCKG 1 cut(s) 1414
MspI CCGG 2 cut(s) 816, 1258
MspR9I CCNGG 2 cut(s) 130, 837
MunI CAATTG 1 cut(s) 1116
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 2 cut(s) 130, 837
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 3 cut(s) 125, 428, 1484
NaeI GCCGGC 1 cut(s) 1259
NcoI CCATGG 2 cut(s) 394, 1243
NdeII GATC 8 cut(s) 360, 591, 623, 739, 755, 1299, 1360, 1452
NgoMIV GCCGGC 1 cut(s) 1257
NlaIV GGNNCC 3 cut(s) 103, 786, 1369
NmuCI GTSAC 3 cut(s) 24, 167, 1320
NspI RCATGY 3 cut(s) 303, 483, 1265
NspV TTCGAA 1 cut(s) 113
PaeI GCATGC 2 cut(s) 303, 1265
PagI TCATGA 2 cut(s) 714, 742
PaqCI CACCTGC 1 cut(s) 1196
PciI ACATGT 1 cut(s) 479
PctI GAATGC 1 cut(s) 121
PdiI GCCGGC 1 cut(s) 1259
PfeI GAWTC 4 cut(s) 86, 711, 718, 1159
PflMI CCANNNNNTGG 1 cut(s) 1364
PkrI GCNGC 5 cut(s) 298, 566, 703, 829, 1014
PleI GAGTC 4 cut(s) 454, 858, 970, 1504
PpsI GAGTC 4 cut(s) 454, 858, 970, 1504
Ppu21I YACGTR 1 cut(s) 871
PscI ACATGT 1 cut(s) 479
PsiI TTATAA 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 128, 835
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 2 cut(s) 128, 835
PspN4I GGNNCC 3 cut(s) 103, 786, 1369
PspPI GGNCC 3 cut(s) 101, 769, 1112
PstI CTGCAG 1 cut(s) 1229
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 2 cut(s) 360, 1299
PvuII CAGCTG 1 cut(s) 1414
RsaI GTAC 4 cut(s) 68, 873, 1193, 1313
RsaNI GTAC 4 cut(s) 67, 872, 1192, 1312
RseI CAYNNNNRTG 3 cut(s) 837, 1107, 1470
SaqAI TTAA 6 cut(s) 60, 597, 660, 1236, 1278, 1284
SatI GCNGC 5 cut(s) 297, 565, 702, 828, 1013
Sau3AI GATC 8 cut(s) 360, 591, 623, 739, 755, 1299, 1360, 1452
Sau96I GGNCC 3 cut(s) 101, 769, 1112
SchI GAGTC 4 cut(s) 455, 859, 971, 1505
ScrFI CCNGG 2 cut(s) 130, 837
SduI GDGCHC 2 cut(s) 76, 787
SfaNI GCATC 3 cut(s) 31, 271, 628
SfcI CTRYAG 1 cut(s) 1225
SfuI TTCGAA 1 cut(s) 113
SinI GGWCC 2 cut(s) 101, 769
SmiMI CAYNNNNRTG 3 cut(s) 837, 1107, 1470
SmlI CTYRAG 2 cut(s) 847, 973
SmoI CTYRAG 2 cut(s) 847, 973
SnaBI TACGTA 1 cut(s) 871
SphI GCATGC 2 cut(s) 303, 1265
SsiI CCGC 2 cut(s) 303, 500
SspI AATATT 1 cut(s) 1125
SspMI CTAG 2 cut(s) 285, 561
StyD4I CCNGG 2 cut(s) 128, 835
StyI CCWWGG 2 cut(s) 394, 1243
TaaI ACNGT 3 cut(s) 30, 1098, 1394
TaiI ACGT 1 cut(s) 873
TaqI TCGA 6 cut(s) 107, 113, 290, 754, 965, 1380
TaqII GACCGA 1 cut(s) 786
TatI WGTACW 2 cut(s) 1191, 1311
TfiI GAWTC 4 cut(s) 86, 711, 718, 1159
Tru1I TTAA 6 cut(s) 60, 597, 660, 1236, 1278, 1284
Tru9I TTAA 6 cut(s) 60, 597, 660, 1236, 1278, 1284
TscAI CASTG 4 cut(s) 411, 660, 894, 1406
TseFI GTSAC 3 cut(s) 24, 167, 1320
TseI GCWGC 5 cut(s) 296, 564, 701, 827, 1012
Tsp45I GTSAC 3 cut(s) 24, 167, 1320
TspDTI ATGAA 3 cut(s) 687, 703, 927
TspRI CASTG 4 cut(s) 411, 660, 894, 1406
Van91I CCANNNNNTGG 1 cut(s) 1364
VpaK11BI GGWCC 2 cut(s) 101, 769
XapI RAATTY 6 cut(s) 109, 220, 353, 692, 896, 1049
XceI RCATGY 3 cut(s) 303, 483, 1265
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XspI CTAG 2 cut(s) 285, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.