Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011646

Physical Location & Seq

Genomic Coordinates Forward (+)

39289433 .. 39290083

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0321100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGGGGCGGCACTTGGCAGATGTGACTGAGATTTACAACCTGCTGAGCTGGGAGAAAAAACAACGCATCTTCAAGATTGCCTATCTGTTCATCCTGGCCATCCTCTCTCTATTCGGGAGCCATAGAAGAGATGGTCTCGTAGATGCTCCACCCATTGTATGTAAATTACTTGCACTCGTTCACTTTATATATGGACAACTTCTTTCCATCATTTACAATGTCAAGCATTATAATCTTTTAATGGTTGCAAATGGGCGAATGGCAAAGCCTCATAGTGATTCTGAAGAGAGAAGAACATTGTACGTCGTGACTACTCGATCTCATTCACCCCAGTATAATTTCGGAAGAGATCATAAATCAAAGTTATTGTCAACTGCTGCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

129

Amino Acids

14.9

Weight (kDa)

10.0

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cornichon	PF03311	1 - 39	7.1e-07	Cornichon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52520
fragaria_vesca	FvH4_6g29431 FvH4_6g29431 FvH4_6g29431
malus_domestica	MD17G1214500.v1.1
prunus_persica	Prupe.3G090400_v2.0.a1 Prupe.3G090400_v2.0.a1
pyrus_communis	pycom17g21910
rosa_chinensis	RchiOBHm_Chr2g0134901
rosa_laevigata	RLG00000019428
rosa_multiflora	Rmu_sc0007475.1_g000011 Rmu_ssc0000401.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109670
rosa_rugosa	Rorug02G0321100
rosa_samantha	Rh2AG372800 Rh2BG378600 Rh2CG357300 Rh2DG395300
rosa_wichuraiana	Rw2G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	51
AciI	CCGC	1 cut(s)	10
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AsuHPI	GGTGA	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	3 cut(s)	110, 128, 218
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	11, 381
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	2 cut(s)	12, 382
Bme1390I	CCNGG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	78, 136
BmuI	ACTGGG	1 cut(s)	328
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
Bpu1102I	GCTNAGC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	93, 102
BseMII	CTCAG	2 cut(s)	21, 38
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	320, 352
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	22, 39
BspLI	GGNNCC	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	320, 352
Bst2UI	CCWGG	1 cut(s)	98
Bst6I	CTCTTC	3 cut(s)	124, 282, 343
BstDEI	CTNAG	2 cut(s)	30, 47
BstF5I	GGATG	2 cut(s)	93, 102
BstKTI	GATC	2 cut(s)	323, 355
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	320, 352
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	93, 102
BveI	ACCTGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	304
CviJI	RGCY	4 cut(s)	51, 101, 123, 271
CviKI_1	RGCY	4 cut(s)	51, 101, 123, 271
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	30, 47
DpnI	GATC	2 cut(s)	322, 354
DpnII	GATC	2 cut(s)	320, 352
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	3 cut(s)	124, 282, 343
EarI	CTCTTC	3 cut(s)	124, 282, 343
Eco31I	GGTCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	96
FaiI	YATR	9 cut(s)	126, 163, 191, 193, 195, 234, 276, 339, 357
Fnu4HI	GCNGC	2 cut(s)	11, 381
FokI	GGATG	2 cut(s)	80, 89
Fsp4HI	GCNGC	2 cut(s)	11, 381
GluI	GCNGC	2 cut(s)	11, 381
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	1 cut(s)	321
Hpy166II	GTNNAC	2 cut(s)	184, 375
Hpy188I	TCNGA	2 cut(s)	286, 347
Hpy188III	TCNNGA	3 cut(s)	76, 118, 310
Hpy8I	GTNNAC	2 cut(s)	184, 375
Hpy99I	CGWCG	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	176, 251, 383
HpyF3I	CTNAG	2 cut(s)	30, 47
HpySE526I	ACGT	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	320, 352
LmnI	GCTCC	2 cut(s)	120, 154
LpnPI	CCDG	5 cut(s)	37, 56, 83, 110, 347
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	2 cut(s)	78, 136
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	25, 310
MalI	GATC	2 cut(s)	322, 354
MboI	GATC	2 cut(s)	320, 352
MboII	GAAGA	5 cut(s)	64, 141, 299, 306, 360
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	2 cut(s)	167, 340
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	2 cut(s)	116, 282
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	320, 352
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	25, 310
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	12, 382
PsiI	TTATAA	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	2 cut(s)	11, 381
Sau3AI	GATC	2 cut(s)	320, 352
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	3 cut(s)	45, 53, 309
SfaNI	GCATC	2 cut(s)	78, 136
Sse9I	AATT	2 cut(s)	167, 340
SsiI	CCGC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	96
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	319
TasI	AATT	2 cut(s)	167, 340
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TseFI	GTSAC	2 cut(s)	25, 310
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	2 cut(s)	25, 310
TspDTI	ATGAA	2 cut(s)	17, 82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.