Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011646

Physical Location & Seq

Genomic Coordinates Reverse (-)

33820927 .. 33823569

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGATTCAGCATTTTGGAGTTAGTGATCATGAGTGGCTTCGATCTTTGTATGAGGACCGATTTAGGTGGGCTCCAGTTTACTTGAAAGAGACATCTTTTGCCGGAATGTCGGCTGCACATCCAGGTGAAACCTTGAGTCCATTTTTTGACAAATACGTACACAAGCAAACTCCACTGAAAGAATTTCTGGATAAGTATGAATTGGCTCTACAAAAGAAGCATAAGGAAGAAGCTCTTGCAGATATTGAGTCGAGAAGCTCAAGTCCCATGTTGAAAACCAGATGTTCTTTTGAGTTGCAGCTTTCAAAAGTTTACACAAAAGACATATTCAAAAAATTCCAATTTGAAGTGGAGGAGATGTATTCTTGTTTTAGCACTACACAGTTGCACATTGATGGGCCAATTGTAATATTCTTGGTCAAGGAGCGTGTTGTGGCAGATGGGAATCGGCGAGAGATAAGAGATTATGAGGTTCTGTACAACAGAACAGCAGGTGAGGTTCGGTGTATCTGCAGTTGCTTTAACTTCCATGGGTATCTATGCCGGCATGCTCTGTGTGTCCTTAATTTTAATGGAGTGGAGGAGATCCCTTCCAAGTACATTCTGTCACGATGGAAAAAGGATTACAAGCGTTTATATATTCCAGATCATGGCTCCAATAATGTCGATGTTACTGACCGTATGCAGTGGTTCAGTCAGCTGTATAGAAGTGCCTTGCAAATTGTAGAGGAAGGTGTGATCTCTCTTGACCATTACAATGTAGCATTGCAAGCATTTGAAGAGTCTTTGAAAAGGGTTCACGAGATAGAAGACAAGCATGAGCCTGAAAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

278

Amino Acids

32.83

Weight (kDa)

6.19

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52520
fragaria_vesca	FvH4_6g29431 FvH4_6g29431 FvH4_6g29431
malus_domestica	MD17G1214500.v1.1
prunus_persica	Prupe.3G090400_v2.0.a1 Prupe.3G090400_v2.0.a1
pyrus_communis	pycom17g21910
rosa_chinensis	RchiOBHm_Chr2g0134901
rosa_laevigata	RLG00000019428
rosa_multiflora	Rmu_sc0007475.1_g000011 Rmu_ssc0000401.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109670
rosa_rugosa	Rorug02G0321100
rosa_samantha	Rh2AG372800 Rh2BG378600 Rh2CG357300 Rh2DG395300
rosa_wichuraiana	Rw2G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccB7I	CCANNNNNTGG	1 cut(s)	650
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	2 cut(s)	182, 335
AfaI	GTAC	3 cut(s)	159, 479, 599
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	7 cut(s)	85, 274, 306, 331, 347, 779, 790
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	233, 258, 301, 700
AluI	AGCT	4 cut(s)	233, 258, 301, 700
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	580
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	2 cut(s)	113, 298
ApoI	RAATTY	2 cut(s)	182, 335
AspS9I	GGNCC	2 cut(s)	55, 398
AsuHPI	GGTGA	2 cut(s)	137, 506
AvaII	GGWCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	800
BbsI	GAAGAC	1 cut(s)	816
BbvI	GCAGC	2 cut(s)	100, 310
BccI	CCATC	3 cut(s)	389, 434, 606
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	482
BisI	GCNGC	2 cut(s)	114, 299
BlsI	GCNGC	2 cut(s)	115, 300
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 398
BmiI	GGNNCC	2 cut(s)	72, 655
BmrFI	CCNGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	816
BpmI	CTGGAG	1 cut(s)	57
BpuEI	CTTGAG	2 cut(s)	154, 244
BsaAI	YACGTR	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	1 cut(s)	543
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	764
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	1 cut(s)	118
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	764
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	2 cut(s)	368, 596
BseXI	GCAGC	2 cut(s)	100, 310
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	102, 544
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	5 cut(s)	25, 41, 585, 646, 738
Bsp19I	CCATGG	1 cut(s)	529
BspANI	GGCC	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	72, 655
BspMAI	CTGCAG	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	543
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	5 cut(s)	25, 41, 585, 646, 738
BssSI	CACGAG	1 cut(s)	800
BssT1I	CCWWGG	1 cut(s)	529
Bst2BI	CACGAG	1 cut(s)	800
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	384, 680
Bst6I	CTCTTC	1 cut(s)	774
BstAUI	TGTACA	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	545, 549, 771
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	5 cut(s)	28, 44, 588, 649, 741
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	5 cut(s)	25, 41, 585, 646, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	511
BstSNI	TACGTA	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	100, 310
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	2 cut(s)	173, 692
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	3 cut(s)	545, 549, 771
CciI	TCATGA	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	543
Cfr13I	GGNCC	2 cut(s)	55, 398
Csp6I	GTAC	3 cut(s)	158, 478, 598
CviAII	CATG	6 cut(s)	29, 268, 530, 548, 650, 818
CviQI	GTAC	3 cut(s)	158, 478, 598
DpnI	GATC	5 cut(s)	27, 43, 587, 648, 740
DpnII	GATC	5 cut(s)	25, 41, 585, 646, 738
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco105I	TACGTA	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	6 cut(s)	32, 271, 533, 551, 653, 821
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	6 cut(s)	28, 267, 529, 547, 649, 817
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	114, 299
FokI	GGATG	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	114, 299
GluI	GCNGC	2 cut(s)	114, 299
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	2 cut(s)	102, 544
Hin1II	CATG	6 cut(s)	32, 271, 533, 551, 653, 821
HinfI	GANTC	5 cut(s)	4, 136, 248, 445, 782
HpaII	CCGG	2 cut(s)	102, 544
HphI	GGTGA	2 cut(s)	137, 506
Hpy166II	GTNNAC	4 cut(s)	79, 160, 313, 799
Hpy188III	TCNNGA	7 cut(s)	29, 188, 252, 609, 644, 746, 800
Hpy8I	GTNNAC	4 cut(s)	79, 160, 313, 799
HpyAV	CCTTC	2 cut(s)	600, 725
HpyCH4III	ACNGT	2 cut(s)	384, 680
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	8 cut(s)	116, 239, 298, 388, 513, 685, 718, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	32, 271, 533, 551, 653, 821
KroI	GCCGGC	1 cut(s)	543
KroNI	GCCGGC	1 cut(s)	545
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	5 cut(s)	25, 41, 585, 646, 738
LmnI	GCTCC	3 cut(s)	76, 424, 659
LpnPI	CCDG	9 cut(s)	87, 108, 115, 135, 173, 292, 477, 557, 657
Lsp1109I	GCAGC	2 cut(s)	100, 310
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	606, 670
MalI	GATC	5 cut(s)	27, 43, 587, 648, 740
MboI	GATC	5 cut(s)	25, 41, 585, 646, 738
MboII	GAAGA	3 cut(s)	239, 791, 821
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	7 cut(s)	182, 200, 335, 341, 402, 565, 720
MlyI	GAGTC	3 cut(s)	145, 257, 791
MnlI	CCTC	6 cut(s)	46, 346, 463, 490, 574, 721
MroNI	GCCGGC	1 cut(s)	543
MseI	TTAA	3 cut(s)	522, 564, 570
MslI	CAYNNNNRTG	3 cut(s)	123, 393, 756
MspA1I	CMGCKG	1 cut(s)	700
MspI	CCGG	2 cut(s)	102, 544
MspR9I	CCNGG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	770
NaeI	GCCGGC	1 cut(s)	545
NcoI	CCATGG	1 cut(s)	529
NdeII	GATC	5 cut(s)	25, 41, 585, 646, 738
NgoMIV	GCCGGC	1 cut(s)	543
NlaIII	CATG	6 cut(s)	32, 271, 533, 551, 653, 821
NlaIV	GGNNCC	2 cut(s)	72, 655
NmuCI	GTSAC	1 cut(s)	606
NspI	RCATGY	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	551
PagI	TCATGA	1 cut(s)	28
PaqCI	CACCTGC	1 cut(s)	482
PdiI	GCCGGC	1 cut(s)	545
PfeI	GAWTC	2 cut(s)	4, 445
PflMI	CCANNNNNTGG	1 cut(s)	650
PkrI	GCNGC	2 cut(s)	115, 300
PleI	GAGTC	3 cut(s)	144, 256, 790
PpsI	GAGTC	3 cut(s)	144, 256, 790
Ppu21I	YACGTR	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	72, 655
PspPI	GGNCC	2 cut(s)	55, 398
PstI	CTGCAG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	700
RsaI	GTAC	3 cut(s)	159, 479, 599
RsaNI	GTAC	3 cut(s)	158, 478, 598
RseI	CAYNNNNRTG	3 cut(s)	123, 393, 756
SaqAI	TTAA	3 cut(s)	522, 564, 570
SatI	GCNGC	2 cut(s)	114, 299
Sau3AI	GATC	5 cut(s)	25, 41, 585, 646, 738
Sau96I	GGNCC	2 cut(s)	55, 398
SchI	GAGTC	3 cut(s)	145, 257, 791
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	511
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	3 cut(s)	123, 393, 756
SmlI	CTYRAG	2 cut(s)	133, 259
SmoI	CTYRAG	2 cut(s)	133, 259
SnaBI	TACGTA	1 cut(s)	157
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	7 cut(s)	182, 200, 335, 341, 402, 565, 720
SspI	AATATT	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	384, 680
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	40, 251, 666
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	7 cut(s)	182, 200, 335, 341, 402, 565, 720
TatI	WGTACW	2 cut(s)	477, 597
TfiI	GAWTC	2 cut(s)	4, 445
Tru1I	TTAA	3 cut(s)	522, 564, 570
Tru9I	TTAA	3 cut(s)	522, 564, 570
TscAI	CASTG	2 cut(s)	180, 692
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	2 cut(s)	113, 298
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	180, 692
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	2 cut(s)	182, 335
XceI	RCATGY	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.