Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004865

Physical Location & Seq

Genomic Coordinates Reverse (-)

61961303 .. 61962673

Gene Structure 1371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020171

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTGCTTGGAAAGAAGTACATGGACGAGTCCAAGGATGCGATTTTGAGCCCCGGGTATATAAAGAGAATGAAGGCTTTGAGCCAGAAGTTGGACAGGTTCTTGGAGCTTGTGTTGGATAAGTATTTTGAAAATAAGAAGGCAAAAGGCTTTGTTGCAACATATATGGTGGATGTGCTTTTGCAGCTTGCTGATGATCCCGACCTTGAAGTTGAGCTTGAGAGGCATGGGGTTAAAAGCCTTTACGACCTAATTGCTGGTGGGACAGAGAGCTCAGCTGTGGTGGTGGAGTGGGCAATCTCGGAGCTCCTAAGGGAGCAAGAGATTTTCAAGAAAGCAACTGAGGAGCTAGACAGGGTTATTGGAAGTGAGAGATGGGTCGAAGAGAAGGACATTGTTAACTTGCCTTTCATTGATGCCATTGCCAAGGAAACCATGAGGCTACATCCTGTGGCACCCATGATGGTGCCAAGACTAGGACGTGAAGATTGCCAAGACAATCCCAATGAGTTCTGCCCCGAAAGGTTCATTGGCAAGGACATTGATGTCAAAGGCCATGACTTTGAGCTGTTGCTATTTGGGTCAGGAAGGAGGATGTGCTCTGCTTACAGTCTTGGCATTAAGGTCATTCAATCAAGTCTGGCTAATATCTTACATGGGTTCATGTGGAGAATATTGCCTGGGAACATGAAGAAAGAGGATTTGAGTACGGGGGAAATTTTTGGTCTTTCGACACCCAGGAAGCTTCCCCTTGTAGCAGTCGCTGAACCTCGTCTTCCACCTCACCTTTACTTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

267

Amino Acids

30.21

Weight (kDa)

5.54

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	28 - 164	3e-21	Cytochrome P450
p450	PF00067	165 - 246	9.8e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34910 FvH4_6g34950
malus_domestica	MD09G1181200.v1.1 MD17G1167200.v1.1
prunus_persica	Prupe.3G039300_v2.0.a1
pyrus_communis	pycom09g09890 pycom17g15910
rosa_chinensis	RchiOBHm_Chr2g0145811 RchiOBHm_Chr2g0145921
rosa_laevigata	RLG00000020169 RLG00000020170 RLG00000020171 RLG00000020176
rosa_multiflora	Rmu_sc0001702.1_g000001 Rmu_sc0001702.1_g000002 Rmu_sc0001702.1_g000024
rosa_roxburghii	Rroxscaffold_152G00434770 Rroxscaffold_152G00434780 Rroxscaffold_152G00434800 Rroxscaffold_2G00100360 Rroxscaffold_2G00100420 Rroxscaffold_2G00100430
rosa_rugosa	Rorug02G0393400 Rorug02G0393500
rosa_samantha	Rh2AG448500 Rh2BG460200 Rh2BG460600 Rh2CG435500 Rh2DG470000
rosa_wichuraiana	Rw2G036590 Rw2G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AccB1I	GGYRCC	2 cut(s)	454, 466
AccB7I	CCANNNNNTGG	1 cut(s)	91
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	717
AfaI	GTAC	2 cut(s)	20, 709
AfiI	CCNNNNNNNGG	2 cut(s)	91, 476
AgsI	TTSAA	4 cut(s)	131, 209, 331, 632
AjiI	CACGTC	1 cut(s)	482
AjnI	CCWGG	2 cut(s)	679, 737
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	9 cut(s)	109, 187, 217, 273, 278, 307, 349, 568, 745
AluI	AGCT	9 cut(s)	109, 187, 217, 273, 278, 307, 349, 568, 745
Alw21I	GWGCWC	3 cut(s)	275, 309, 602
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	717
AsuC2I	CCSGG	2 cut(s)	54, 55
AsuHPI	GGTGA	1 cut(s)	776
AvaI	CYCGRG	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	311
BanI	GGYRCC	2 cut(s)	454, 466
BanII	GRGCYC	3 cut(s)	53, 275, 309
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	3 cut(s)	275, 309, 602
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	369, 457
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	681, 739
BcnI	CCSGG	2 cut(s)	54, 55
BfaI	CTAG	2 cut(s)	350, 476
BisI	GCNGC	1 cut(s)	185
BlpI	GCTNAGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	4 cut(s)	54, 55, 681, 739
BmeT110I	CYCGRG	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	456, 468
BmrFI	CCNGG	4 cut(s)	54, 55, 681, 739
BmsI	GCATC	2 cut(s)	28, 406
BpiI	GAAGAC	1 cut(s)	767
Bpu1102I	GCTNAGC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	54, 55
BsaJI	CCNNGG	6 cut(s)	33, 52, 53, 426, 680, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 476
Bse21I	CCTNAGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	681, 739
BseDI	CCNNGG	6 cut(s)	33, 52, 53, 426, 680, 737
BseGI	GGATG	4 cut(s)	43, 178, 445, 600
BseLI	CCNNNNNNNGG	2 cut(s)	91, 476
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	288, 333
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	2 cut(s)	454, 466
BsiHKAI	GWGCWC	3 cut(s)	275, 309, 602
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	91, 476
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	555
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	4 cut(s)	53, 275, 309, 602
Bsp143I	GATC	1 cut(s)	196
Bsp1720I	GCTNAGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	2 cut(s)	287, 334
BspLI	GGNNCC	2 cut(s)	456, 468
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	2 cut(s)	454, 466
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	6 cut(s)	33, 52, 53, 426, 680, 737
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	2 cut(s)	33, 426
Bst2UI	CCWGG	2 cut(s)	681, 739
Bst4CI	ACNGT	1 cut(s)	611
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	3 cut(s)	274, 311, 342
BstF5I	GGATG	4 cut(s)	43, 178, 445, 600
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 223
BstNI	CCWGG	2 cut(s)	681, 739
BstSCI	CCNGG	4 cut(s)	52, 53, 679, 737
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	767
Bsu36I	CCTNAGG	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	555
BtrI	CACGTC	1 cut(s)	482
BtsCI	GGATG	4 cut(s)	43, 178, 445, 600
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	764
Cfr9I	CCCGGG	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	19, 708
CviAII	CATG	8 cut(s)	22, 227, 436, 460, 557, 656, 664, 688
CviQI	GTAC	2 cut(s)	19, 708
DdeI	CTNAG	3 cut(s)	274, 311, 342
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Ecl136II	GAGCTC	2 cut(s)	273, 307
Eco130I	CCWWGG	2 cut(s)	33, 426
Eco24I	GRGCYC	3 cut(s)	53, 275, 309
Eco53kI	GAGCTC	2 cut(s)	273, 307
Eco81I	CCTNAGG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	53
EcoICRI	GAGCTC	2 cut(s)	273, 307
EcoRII	CCWGG	2 cut(s)	679, 737
EcoT14I	CCWWGG	2 cut(s)	33, 426
EcoT38I	GRGCYC	3 cut(s)	53, 275, 309
ErhI	CCWWGG	2 cut(s)	33, 426
FaeI	CATG	8 cut(s)	25, 230, 439, 463, 560, 659, 667, 691
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	8 cut(s)	21, 226, 435, 459, 556, 655, 663, 687
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	4 cut(s)	50, 185, 432, 607
FriOI	GRGCYC	3 cut(s)	53, 275, 309
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	2 cut(s)	350, 476
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	8 cut(s)	25, 230, 439, 463, 560, 659, 667, 691
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	1 cut(s)	29
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	3 cut(s)	200, 331, 585
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	4 cut(s)	67, 133, 382, 582
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	2 cut(s)	158, 184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 223
HpyF3I	CTNAG	3 cut(s)	274, 311, 342
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	8 cut(s)	25, 230, 439, 463, 560, 659, 667, 691
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	5 cut(s)	106, 304, 312, 316, 346
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	28, 406
MaeI	CTAG	2 cut(s)	350, 476
MaeII	ACGT	1 cut(s)	481
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	395, 497, 703, 767
MhlI	GDGCHC	4 cut(s)	53, 275, 309, 602
MluCI	AATT	2 cut(s)	252, 717
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	72, 96
MnlI	CCTC	7 cut(s)	216, 337, 432, 585, 691, 780, 792
MseI	TTAA	3 cut(s)	234, 399, 621
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	4 cut(s)	54, 55, 681, 739
MvaI	CCWGG	2 cut(s)	681, 739
MwoI	GCNNNNNNNGC	2 cut(s)	184, 223
NciI	CCSGG	2 cut(s)	54, 55
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	8 cut(s)	25, 230, 439, 463, 560, 659, 667, 691
NlaIV	GGNNCC	2 cut(s)	456, 468
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp124BI	GAGCTC	2 cut(s)	275, 309
Psp6I	CCWGG	2 cut(s)	679, 737
PspGI	CCWGG	2 cut(s)	679, 737
PspN4I	GGNNCC	2 cut(s)	456, 468
PstNI	CAGNNNCTG	1 cut(s)	764
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	20, 709
RsaNI	GTAC	2 cut(s)	19, 708
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	2 cut(s)	275, 309
SaqAI	TTAA	3 cut(s)	234, 399, 621
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	4 cut(s)	54, 55, 681, 739
SduI	GDGCHC	4 cut(s)	53, 275, 309, 602
SfaNI	GCATC	2 cut(s)	28, 406
SmaI	CCCGGG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	252, 717
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	2 cut(s)	350, 476
SstI	GAGCTC	2 cut(s)	275, 309
StyD4I	CCNGG	4 cut(s)	52, 53, 679, 737
StyI	CCWWGG	2 cut(s)	33, 426
TaaI	ACNGT	1 cut(s)	611
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	2 cut(s)	381, 731
TasI	AATT	2 cut(s)	252, 717
TatI	WGTACW	1 cut(s)	18
Tru1I	TTAA	3 cut(s)	234, 399, 621
Tru9I	TTAA	3 cut(s)	234, 399, 621
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	5 cut(s)	86, 400, 517, 652, 704
TspMI	CCCGGG	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	717
XmaI	CCCGGG	1 cut(s)	53
XspI	CTAG	2 cut(s)	350, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.