Rorug02G0393400

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004865
Physical Location & Seq
Forward (+)
50398891 .. 50400066
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0393400.1

Sequence Viewer

Length: 828 bp
ATGGAACACAAATCCCCTGTGCCATCAACACCGGATGTGGAAGCTACAGATAGTTGTGATTGCCAAATATCTAGCAAATTGGAATTTGGAAGTGGTATAGACTTGAATTGTTCTGTAGAAGTTGAAAATAATGAAGCTGGAGGTAGTGAAGAAAAGTCAGAAGAAGCCACAAAACCTAATGAAACGACTGATTCAATTCATTCTAGAATGCGTCAAGAATTGATTCCTGCAGTTGGTATGGAGTTTGAAACAGAACATGATGCAGATGCTTTTTACAATCAATATGCATATAGATTTGGTTTCAGTACCAGATTAAGTAAGGCACATAAATCCTCCAGTGGCCTATTAAGGGACAAGCTCTTTGTTTGCTCAGCCGAAGGTAAACGTGGAAGAGACAAGCGAAATCCCTTTGTCAAATCTCATCGTGCTGAGACAAGATTTGGGTGTAGAGCTAAGATGAAAATTAGGTATGATCTGTTATCCAGAAAGTATAGTGTTGTGGAATTTGTTGCTGATCATACCCATGTGACTACAACTCCTAGTAAGACCCATCTTTTTAGGTCTCATAGGAAAATCTCTCTTGCACAAATTGTTCAAGCTGATATGGCTTACGATTCAGGAATCAATCCAAAAGAAACTCTTGAACTATTAAGTAGACAAGCTGGTGGACGTGAGCATTTGGGATTTATTCCAGAAGATTATAGGAATTATTTACGTTCAAAGCGAACAAGAGAAATGAAGTCAGGGGATACCGGTGGTGTTTTGGAATATCTACAAAAAATGCAGTTGAATGATCCTAATTTTGTTTATGCAAATACAAGTGCATGA

Protein Analysis

275

Amino Acids

31.09

Weight (kDa)

7.15

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 91 - 176 1.5e-18 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 655
AclWI GGATC 1 cut(s) 788
AcsI RAATTY 2 cut(s) 83, 503
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 233, 349
AgeI ACCGGT 1 cut(s) 752
AgsI TTSAA 8 cut(s) 106, 125, 195, 248, 596, 644, 720, 790
AjiI CACGTC 1 cut(s) 671
AluBI AGCT 6 cut(s) 44, 137, 358, 452, 599, 662
AluI AGCT 6 cut(s) 44, 137, 358, 452, 599, 662
Alw26I GTCTC 3 cut(s) 387, 425, 567
AlwI GGATC 1 cut(s) 788
AoxI GGCC 1 cut(s) 340
ApoI RAATTY 2 cut(s) 83, 503
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AsiGI ACCGGT 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 222
BccI CCATC 2 cut(s) 31, 558
BciVI GTATCC 1 cut(s) 742
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 3 cut(s) 387, 425, 567
BfaI CTAG 3 cut(s) 72, 204, 540
BfmI CTRYAG 3 cut(s) 45, 114, 228
BfuI GTATCC 1 cut(s) 742
BlpI GCTNAGC 1 cut(s) 370
BmgBI CACGTC 1 cut(s) 671
BmsI GCATC 2 cut(s) 250, 256
BpmI CTGGAG 2 cut(s) 159, 319
Bpu1102I GCTNAGC 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 567
BsaWI WCCGGW 2 cut(s) 31, 752
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 349
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 233, 349
BseMII CTCAG 2 cut(s) 384, 420
BseNI ACTGG 1 cut(s) 336
BshFI GGCC 1 cut(s) 342
BshTI ACCGGT 1 cut(s) 752
BsiSI CCGG 2 cut(s) 32, 753
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 233, 349
BsmAI GTCTC 3 cut(s) 387, 425, 567
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 1 cut(s) 342
Bso31I GGTCTC 1 cut(s) 567
Bsp143I GATC 3 cut(s) 472, 514, 793
Bsp1720I GCTNAGC 1 cut(s) 370
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 2 cut(s) 383, 421
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 788
BspTNI GGTCTC 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 752
BsrI ACTGG 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 752
BssMI GATC 3 cut(s) 472, 514, 793
Bst6I CTCTTC 1 cut(s) 385
BstDEI CTNAG 3 cut(s) 370, 429, 453
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 3 cut(s) 475, 517, 796
BstMAI GTCTC 3 cut(s) 387, 425, 567
BstMBI GATC 3 cut(s) 472, 514, 793
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstSFI CTRYAG 3 cut(s) 45, 114, 228
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 1 cut(s) 342
BtrI CACGTC 1 cut(s) 671
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 752
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 306
CspAI ACCGGT 1 cut(s) 752
CviAII CATG 3 cut(s) 257, 524, 825
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 3 cut(s) 370, 429, 453
DpnI GATC 3 cut(s) 474, 516, 795
DpnII GATC 3 cut(s) 472, 514, 793
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 567
EcoT22I ATGCAT 1 cut(s) 289
FaeI CATG 3 cut(s) 260, 527, 828
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FaqI GGGAC 1 cut(s) 365
FatI CATG 3 cut(s) 256, 523, 824
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 655
FokI GGATG 1 cut(s) 47
FspBI CTAG 3 cut(s) 72, 204, 540
GsuI CTGGAG 2 cut(s) 159, 319
HaeIII GGCC 1 cut(s) 342
HapII CCGG 2 cut(s) 32, 753
HgaI GACGC 1 cut(s) 200
Hin1II CATG 3 cut(s) 260, 527, 828
HinfI GANTC 4 cut(s) 191, 223, 614, 621
HpaII CCGG 2 cut(s) 32, 753
Hpy166II GTNNAC 3 cut(s) 383, 656, 668
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 6 cut(s) 204, 215, 483, 618, 641, 692
Hpy8I GTNNAC 3 cut(s) 383, 656, 668
HpyAV CCTTC 1 cut(s) 371
HpyCH4IV ACGT 3 cut(s) 385, 670, 715
HpyCH4V TGCA 7 cut(s) 230, 263, 287, 584, 784, 812, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 3 cut(s) 370, 429, 453
HpySE526I ACGT 3 cut(s) 385, 670, 715
Hsp92II CATG 3 cut(s) 260, 527, 828
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 472, 514, 793
LweI GCATC 2 cut(s) 250, 256
MaeI CTAG 3 cut(s) 72, 204, 540
MaeII ACGT 3 cut(s) 385, 670, 715
MaeIII GTNAC 1 cut(s) 526
MalI GATC 3 cut(s) 474, 516, 795
MboI GATC 3 cut(s) 472, 514, 793
MboII GAAGA 4 cut(s) 161, 173, 402, 707
MnlI CCTC 2 cut(s) 134, 343
Mph1103I ATGCAT 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 3 cut(s) 314, 347, 650
MslI CAYNNNNRTG 1 cut(s) 522
MspI CCGG 2 cut(s) 32, 753
Mva1269I GAATGC 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeII GATC 3 cut(s) 472, 514, 793
NlaIII CATG 3 cut(s) 260, 527, 828
NmuCI GTSAC 1 cut(s) 526
NsiI ATGCAT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 721
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 4 cut(s) 191, 223, 614, 621
PinAI ACCGGT 1 cut(s) 752
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 522
SaqAI TTAA 3 cut(s) 314, 347, 650
Sau3AI GATC 3 cut(s) 472, 514, 793
SfaNI GCATC 2 cut(s) 250, 256
SfcI CTRYAG 3 cut(s) 45, 114, 228
SmiMI CAYNNNNRTG 1 cut(s) 522
SspMI CTAG 3 cut(s) 72, 204, 540
TaiI ACGT 3 cut(s) 388, 673, 718
TfiI GAWTC 4 cut(s) 191, 223, 614, 621
Tru1I TTAA 3 cut(s) 314, 347, 650
Tru9I TTAA 3 cut(s) 314, 347, 650
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 526
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 5 cut(s) 147, 188, 195, 473, 752
TspRI CASTG 1 cut(s) 343
XapI RAATTY 2 cut(s) 83, 503
XbaI TCTAGA 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 655
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 3 cut(s) 72, 204, 540
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.