Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001702.1

Orthogroup ID

OG0004865

Physical Location & Seq

Genomic Coordinates Reverse (-)

5409 .. 7437

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001702.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

atggaagacactacttgggttccctacgccactgcatggctgggagctctaaaccttatcctgttttcccgccatctccgccgccgaaaattcaatttacctccccgcccaaaaccttggcccatcattggaaacctcaacctcataggccacctccctcaccgttctgtccatgcactttcccaaatatatgggcccatcatgcagctgaaattcgggtccttccccattgtcgtggcctcctcggtcgaaatggccgaggccttcctcaaaactgaagacgttacttttgccgaccggcccaaaatggcggcgggaaagtacaccacctacaactactccaacatcacttggtccccttatggcccatattggagccagggccgtaagatgtgcatcatggaacttttcagcagcaaacgcctacagtcacatgaatacataagagaagaaatgagtgctttgcttagaggcttgtatgagtcctccaacactaacattttgctcaaagaccacttctccactgtgagtctcaatgtcataagcataatggtgcttggaaagaagtacacagacgagtccaaggatgcgatattgagccccgatgagtttaagaaattgcttgatgagctgttcttgctgagtggggtgttgaatattggtgatttcagtccttggcttgacttcttggacttgcaggggtatataaagcgaatgaaggctttaagcaagaagttggacaggttcttggagcatgtgttggatgagcatattgaaaataagaaggcaaaaggctttgttgcaacagatatggtggatgtgcttttgcagcttgctgatgatcccgaccttgtagttaagcttgaggggcatggggtcaagggctttacgcaggacctaattgcttgtgggacagagagctcagccgtgatagtggagtgggcaatttcggagcttctaagaaagccagagattttcaggaaggcaaccgaggagctagacagggtgattggaagggaaagatgggtggaagagagagacatttttcacttgccattcattgatgccattgccaaggaaaccatgaggcttcaccctgtggcacccatgttggtgccaagactagcacgtgaagattgccaagttgctggttataacattcctaagggcaacagagtcctagtgagtgtgtggacaataggaagagaccctaacttgtgggacaatcccaatgagttctgcccggaaaggttcattggcaaggacattgatgtcaagggccaagactttgagctgttgccatttgggtcaggaaggaggatgtgccctggttacagtcttggcattaacgttattcaatcaagtctggctaatatcttacatggttcacatggagattgcctgggaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

470

Amino Acids

53.41

Weight (kDa)

6.52

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34910 FvH4_6g34950
malus_domestica	MD09G1181200.v1.1 MD17G1167200.v1.1
prunus_persica	Prupe.3G039300_v2.0.a1
pyrus_communis	pycom09g09890 pycom17g15910
rosa_chinensis	RchiOBHm_Chr2g0145811 RchiOBHm_Chr2g0145921
rosa_laevigata	RLG00000020169 RLG00000020170 RLG00000020171 RLG00000020176
rosa_multiflora	Rmu_sc0001702.1_g000001 Rmu_sc0001702.1_g000002 Rmu_sc0001702.1_g000024
rosa_roxburghii	Rroxscaffold_152G00434770 Rroxscaffold_152G00434780 Rroxscaffold_152G00434800 Rroxscaffold_2G00100360 Rroxscaffold_2G00100420 Rroxscaffold_2G00100430
rosa_rugosa	Rorug02G0393400 Rorug02G0393500
rosa_samantha	Rh2AG448500 Rh2BG460200 Rh2BG460600 Rh2CG435500 Rh2DG470000
rosa_wichuraiana	Rw2G036590 Rw2G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1155
AasI	GACNNNNNNGTC	1 cut(s)	1271
AccB1I	GGYRCC	2 cut(s)	1102, 1114
AccB7I	CCANNNNNTGG	1 cut(s)	36
AciI	CCGC	6 cut(s)	70, 79, 82, 106, 311, 314
AclI	AACGTT	1 cut(s)	1350
AclWI	GGATC	1 cut(s)	836
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	89, 212
AcuI	CTGAAG	1 cut(s)	297
AcvI	CACGTG	1 cut(s)	1130
AdeI	CACNNNGTG	1 cut(s)	1099
AfaI	GTAC	2 cut(s)	323, 569
AfiI	CCNNNNNNNGG	2 cut(s)	36, 128
AgsI	TTSAA	4 cut(s)	94, 655, 776, 1358
AjnI	CCWGG	3 cut(s)	378, 1327, 1401
AjuI	GAANNNNNNNTTGG	2 cut(s)	1239, 1271
AluBI	AGCT	9 cut(s)	47, 208, 631, 832, 862, 921, 955, 997, 1294
AluI	AGCT	9 cut(s)	47, 208, 631, 832, 862, 921, 955, 997, 1294
Alw21I	GWGCWC	2 cut(s)	49, 923
Alw26I	GTCTC	3 cut(s)	536, 1032, 1200
AlwI	GGATC	1 cut(s)	836
ApaI	GGGCCC	1 cut(s)	198
ApeKI	GCWGC	3 cut(s)	205, 414, 829
ApoI	RAATTY	2 cut(s)	89, 212
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AsuC2I	CCSGG	1 cut(s)	1244
AsuHPI	GGTGA	4 cut(s)	152, 674, 1018, 1085
AvaII	GGWCC	3 cut(s)	219, 354, 895
AxyI	CCTNAGG	1 cut(s)	1164
BaeGI	GKGCMC	2 cut(s)	198, 1328
BanI	GGYRCC	2 cut(s)	1102, 1114
BanII	GRGCYC	4 cut(s)	49, 198, 602, 923
BbrPI	CACGTG	1 cut(s)	1130
BbsI	GAAGAC	2 cut(s)	12, 285
Bbv12I	GWGCWC	2 cut(s)	49, 923
BbvI	GCAGC	3 cut(s)	217, 426, 841
BccI	CCATC	4 cut(s)	81, 131, 206, 1017
BceAI	ACGGC	2 cut(s)	369, 911
BciT130I	CCWGG	3 cut(s)	380, 1329, 1403
BcnI	CCSGG	1 cut(s)	1244
BcoDI	GTCTC	3 cut(s)	536, 1032, 1200
BfaI	CTAG	3 cut(s)	998, 1124, 1181
BfmI	CTRYAG	1 cut(s)	425
BisI	GCNGC	5 cut(s)	82, 206, 312, 415, 830
BlpI	GCTNAGC	1 cut(s)	922
BlsI	GCNGC	5 cut(s)	83, 207, 313, 416, 831
Bme1390I	CCNGG	4 cut(s)	380, 1244, 1329, 1403
Bme18I	GGWCC	3 cut(s)	219, 354, 895
BmiI	GGNNCC	7 cut(s)	21, 196, 220, 356, 377, 1104, 1116
BmrFI	CCNGG	4 cut(s)	380, 1244, 1329, 1403
BmsI	GCATC	3 cut(s)	405, 577, 1054
BpiI	GAAGAC	2 cut(s)	12, 285
Bpu1102I	GCTNAGC	1 cut(s)	922
BpuEI	CTTGAG	1 cut(s)	884
BpuMI	CCSGG	1 cut(s)	1244
BsaAI	YACGTR	1 cut(s)	1130
BsaBI	GATNNNNATC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	1200
BsaXI	ACNNNNNCTCC	6 cut(s)	323, 353, 503, 533, 743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 128
Bse118I	RCCGGY	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	1164
Bse3DI	GCAATG	1 cut(s)	1068
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	3 cut(s)	380, 1329, 1403
BseGI	GGATG	4 cut(s)	592, 769, 823, 1326
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	36, 128
BseMI	GCAATG	1 cut(s)	1068
BseMII	CTCAG	2 cut(s)	632, 936
BseRI	GAGGAG	2 cut(s)	232, 1007
BseSI	GKGCMC	2 cut(s)	198, 1328
BseXI	GCAGC	3 cut(s)	217, 426, 841
BseYI	CCCAGC	1 cut(s)	40
Bsh1285I	CGRYCG	2 cut(s)	249, 298
BshNI	GGYRCC	2 cut(s)	1102, 1114
BsiEI	CGRYCG	2 cut(s)	249, 298
BsiHKAI	GWGCWC	2 cut(s)	49, 923
BsiSI	CCGG	2 cut(s)	298, 1244
BslFI	GGGAC	3 cut(s)	340, 925, 1235
BslI	CCNNNNNNNGG	2 cut(s)	36, 128
BsmAI	GTCTC	3 cut(s)	536, 1032, 1200
BsmFI	GGGAC	3 cut(s)	340, 925, 1235
Bso31I	GGTCTC	1 cut(s)	1200
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	5 cut(s)	49, 198, 602, 923, 1328
Bsp143I	GATC	1 cut(s)	841
Bsp1720I	GCTNAGC	1 cut(s)	922
BspACI	CCGC	6 cut(s)	70, 79, 82, 106, 311, 314
BspCNI	CTCAG	2 cut(s)	633, 935
BspLI	GGNNCC	7 cut(s)	21, 196, 220, 356, 377, 1104, 1116
BspPI	GGATC	1 cut(s)	836
BspT107I	GGYRCC	2 cut(s)	1102, 1114
BspTNI	GGTCTC	1 cut(s)	1200
BsrDI	GCAATG	1 cut(s)	1068
BsrFI	RCCGGY	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	297
BssMI	GATC	1 cut(s)	841
BssT1I	CCWWGG	4 cut(s)	116, 582, 674, 1074
Bst2UI	CCWGG	3 cut(s)	380, 1329, 1403
Bst4CI	ACNGT	4 cut(s)	164, 429, 526, 1337
Bst6I	CTCTTC	2 cut(s)	1026, 1198
BstBAI	YACGTR	1 cut(s)	1130
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	5 cut(s)	467, 641, 922, 959, 1164
BstF5I	GGATG	4 cut(s)	592, 769, 823, 1326
BstKTI	GATC	1 cut(s)	844
BstMAI	GTCTC	3 cut(s)	536, 1032, 1200
BstMBI	GATC	1 cut(s)	841
BstMCI	CGRYCG	2 cut(s)	249, 298
BstMWI	GCNNNNNNNGC	7 cut(s)	78, 202, 420, 628, 637, 829, 868
BstNI	CCWGG	3 cut(s)	380, 1329, 1403
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	4 cut(s)	378, 1242, 1327, 1401
BstSFI	CTRYAG	1 cut(s)	425
BstSLI	GKGCMC	2 cut(s)	198, 1328
BstV1I	GCAGC	3 cut(s)	217, 426, 841
BstV2I	GAAGAC	2 cut(s)	12, 285
BstXI	CCANNNNNNTGG	4 cut(s)	117, 191, 235, 1148
Bsu36I	CCTNAGG	1 cut(s)	1164
BtsCI	GGATG	4 cut(s)	592, 769, 823, 1326
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 522
Cac8I	GCNNGC	1 cut(s)	834
Cfr10I	RCCGGY	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	322, 568
CviQI	GTAC	2 cut(s)	322, 568
DdeI	CTNAG	5 cut(s)	467, 641, 922, 959, 1164
DpnI	GATC	1 cut(s)	843
DpnII	GATC	1 cut(s)	841
DraIII	CACNNNGTG	1 cut(s)	1099
DrdI	GACNNNNNNGTC	1 cut(s)	1271
DseDI	GACNNNNNNGTC	1 cut(s)	1271
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	1026, 1198
EarI	CTCTTC	2 cut(s)	1026, 1198
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	2 cut(s)	47, 921
Eco130I	CCWWGG	4 cut(s)	116, 582, 674, 1074
Eco147I	AGGCCT	1 cut(s)	263
Eco24I	GRGCYC	4 cut(s)	49, 198, 602, 923
Eco31I	GGTCTC	1 cut(s)	1200
Eco47I	GGWCC	3 cut(s)	219, 354, 895
Eco53kI	GAGCTC	2 cut(s)	47, 921
Eco57I	CTGAAG	1 cut(s)	297
Eco72I	CACGTG	1 cut(s)	1130
Eco81I	CCTNAGG	1 cut(s)	1164
EcoICRI	GAGCTC	2 cut(s)	47, 921
EcoO109I	RGGNCCY	2 cut(s)	219, 895
EcoRII	CCWGG	3 cut(s)	378, 1327, 1401
EcoT14I	CCWWGG	4 cut(s)	116, 582, 674, 1074
EcoT38I	GRGCYC	4 cut(s)	49, 198, 602, 923
ErhI	CCWWGG	4 cut(s)	116, 582, 674, 1074
FaqI	GGGAC	3 cut(s)	340, 925, 1235
FauI	CCCGC	3 cut(s)	77, 113, 307
Fnu4HI	GCNGC	5 cut(s)	82, 206, 312, 415, 830
FokI	GGATG	4 cut(s)	599, 776, 830, 1333
FriOI	GRGCYC	4 cut(s)	49, 198, 602, 923
Fsp4HI	GCNGC	5 cut(s)	82, 206, 312, 415, 830
FspBI	CTAG	3 cut(s)	998, 1124, 1181
GluI	GCNGC	5 cut(s)	82, 206, 312, 415, 830
GsaI	CCCAGC	1 cut(s)	44
HapII	CCGG	2 cut(s)	298, 1244
HindIII	AAGCTT	1 cut(s)	860
HinfI	GANTC	4 cut(s)	482, 529, 578, 1176
HpaII	CCGG	2 cut(s)	298, 1244
HphI	GGTGA	4 cut(s)	152, 674, 1018, 1085
Hpy166II	GTNNAC	4 cut(s)	324, 570, 1194, 1388
Hpy188I	TCNGA	1 cut(s)	952
Hpy188III	TCNNGA	3 cut(s)	845, 979, 1311
Hpy8I	GTNNAC	4 cut(s)	324, 570, 1194, 1388
HpyAV	CCTTC	7 cut(s)	232, 274, 712, 778, 976, 1008, 1308
HpyCH4III	ACNGT	4 cut(s)	164, 429, 526, 1337
HpyCH4IV	ACGT	3 cut(s)	282, 1129, 1350
HpyCH4V	TGCA	7 cut(s)	35, 176, 205, 396, 697, 803, 829
HpyF10VI	GCNNNNNNNGC	7 cut(s)	78, 202, 420, 628, 637, 829, 868
HpyF3I	CTNAG	5 cut(s)	467, 641, 922, 959, 1164
HpySE526I	ACGT	3 cut(s)	282, 1129, 1350
Kzo9I	GATC	1 cut(s)	841
LmnI	GCTCC	5 cut(s)	44, 375, 751, 952, 994
Lsp1109I	GCAGC	3 cut(s)	217, 426, 841
LweI	GCATC	3 cut(s)	405, 577, 1054
MaeI	CTAG	3 cut(s)	998, 1124, 1181
MaeII	ACGT	3 cut(s)	282, 1129, 1350
MaeIII	GTNAC	3 cut(s)	283, 429, 1331
MalI	GATC	1 cut(s)	843
MboI	GATC	1 cut(s)	841
MboII	GAAGA	6 cut(s)	17, 290, 461, 1043, 1145, 1215
MhlI	GDGCHC	5 cut(s)	49, 198, 602, 923, 1328
MluCI	AATT	6 cut(s)	89, 94, 212, 617, 900, 945
MlyI	GAGTC	4 cut(s)	491, 538, 587, 1185
MmeI	TCCRAC	4 cut(s)	366, 513, 717, 741
MseI	TTAA	4 cut(s)	612, 725, 858, 1347
MslI	CAYNNNNRTG	3 cut(s)	233, 551, 1112
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	2 cut(s)	298, 1244
MspR9I	CCNGG	4 cut(s)	380, 1244, 1329, 1403
MvaI	CCWGG	3 cut(s)	380, 1329, 1403
MwoI	GCNNNNNNNGC	7 cut(s)	78, 202, 420, 628, 637, 829, 868
NciI	CCSGG	1 cut(s)	1244
NdeII	GATC	1 cut(s)	841
NlaIV	GGNNCC	7 cut(s)	21, 196, 220, 356, 377, 1104, 1116
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	758
PceI	AGGCCT	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	83, 207, 313, 416, 831
PleI	GAGTC	4 cut(s)	490, 537, 586, 1184
PmaCI	CACGTG	1 cut(s)	1130
PmlI	CACGTG	1 cut(s)	1130
PpsI	GAGTC	4 cut(s)	490, 537, 586, 1184
Ppu21I	YACGTR	1 cut(s)	1130
PpuMI	RGGWCCY	2 cut(s)	219, 895
PsiI	TTATAA	1 cut(s)	1155
Psp124BI	GAGCTC	2 cut(s)	49, 923
Psp1406I	AACGTT	1 cut(s)	1350
Psp5II	RGGWCCY	2 cut(s)	219, 895
Psp6I	CCWGG	3 cut(s)	378, 1327, 1401
PspCI	CACGTG	1 cut(s)	1130
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	3 cut(s)	378, 1327, 1401
PspN4I	GGNNCC	7 cut(s)	21, 196, 220, 356, 377, 1104, 1116
PspOMI	GGGCCC	1 cut(s)	194
PspPPI	RGGWCCY	2 cut(s)	219, 895
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	323, 569
RsaNI	GTAC	2 cut(s)	322, 568
RseI	CAYNNNNRTG	3 cut(s)	233, 551, 1112
SacI	GAGCTC	2 cut(s)	49, 923
SaqAI	TTAA	4 cut(s)	612, 725, 858, 1347
SatI	GCNGC	5 cut(s)	82, 206, 312, 415, 830
Sau3AI	GATC	1 cut(s)	841
SchI	GAGTC	4 cut(s)	491, 538, 587, 1185
ScrFI	CCNGG	4 cut(s)	380, 1244, 1329, 1403
SduI	GDGCHC	5 cut(s)	49, 198, 602, 923, 1328
SfaNI	GCATC	3 cut(s)	405, 577, 1054
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	3 cut(s)	219, 354, 895
SmiMI	CAYNNNNRTG	3 cut(s)	233, 551, 1112
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	6 cut(s)	89, 94, 212, 617, 900, 945
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	6 cut(s)	70, 79, 82, 106, 311, 314
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	3 cut(s)	998, 1124, 1181
SstI	GAGCTC	2 cut(s)	49, 923
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	4 cut(s)	378, 1242, 1327, 1401
StyI	CCWWGG	4 cut(s)	116, 582, 674, 1074
TaaI	ACNGT	4 cut(s)	164, 429, 526, 1337
TaiI	ACGT	3 cut(s)	285, 1132, 1353
TaqI	TCGA	1 cut(s)	249
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	6 cut(s)	89, 94, 212, 617, 900, 945
TatI	WGTACW	2 cut(s)	321, 567
TauI	GCSGC	2 cut(s)	84, 314
Tru1I	TTAA	4 cut(s)	612, 725, 858, 1347
Tru9I	TTAA	4 cut(s)	612, 725, 858, 1347
TscAI	CASTG	2 cut(s)	37, 529
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	3 cut(s)	205, 414, 829
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	4 cut(s)	450, 731, 1048, 1243
TspRI	CASTG	2 cut(s)	37, 529
Van91I	CCANNNNNTGG	1 cut(s)	36
VpaK11BI	GGWCC	3 cut(s)	219, 354, 895
XapI	RAATTY	2 cut(s)	89, 212
XceI	RCATGY	1 cut(s)	758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XspI	CTAG	3 cut(s)	998, 1124, 1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.