Rroxscaffold_2G00100360

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
22240249 .. 22242916
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100360.1

Sequence Viewer

Length: 1500 bp
ATGGAAGCCACTTCTTGGGTTACATATGCAGCCGCCTGGCTGGGAGCTCTAGCCCTCTTCCTCCTCTCCCGCCACCTCCGCCGCCGCAAGCTTAATTTGCCACCCGGCCCAAAACCCTGGCCCATCATTGGCAACCTCAACCTCATAGGCAATCTTCCCCACCGCTCCATCCATGACCTCTCCCAAAAATATGGGCCCATCATGCACCTCAAATTCGGGTCCTTCCCGGTCGTCGTGGGGTCCTCCGTTGAAATGGCCAAGGCCTTCCTCAAAACCCACGATGTCACCTTCGCCGGGCGGCCTAAAATTGCAGCGGGCAAGCACACCACCTACAACTACTCGGACATCACTTGGTCCCCTTACGGCCCATATTGGCGCCAGGCCCGTAAAATGTGCATCATGGAGCTTTTCAGCAACAAACGCCTAGAGTCGTATGAATACATCAGAAGAGAAGAGATGAGTGCTTTGCTTAGAGGCTTGTATGAGTCCTCCCAAGACCAACGCCAACGTTTTGCTCAAAGACCACCTCTCCAACGAAAGAAGTACACCGACAAGTCCAAGGATGCGATTGTGAGCCCGGACGAGTTCAAGAAAATGATTGATGAGCTGTTCTTGCTGAGTGGAGTGTTGAATATTGGTGATTCAATTCCTTGGCTTGATTTCTTGGACTTGCAGGGGTACATAAAGAGAATGAAGGCTTTGAGCAAGAAGCTGGATAGGTTCTTGGAGCATGTTTTGGATGAACATATTGAAAATAAGAAGGCAAAGGACTTTGTTGCAACAGATATGGTGGATGTGCTTTTGCAGCTCGCTGATGATCCCAACCTTGAAGTTAAGCTTGAGAGGAATGGAGTCAAGGCCTTTACTCAGGACCTAATTGCTGGCGGGACAGAGAGCTCAGCTGTGACGGTGGAGTGGGCAATCTCGGAGCTCCTAAAGAAGCCAGAGATTTTCAAGAAGGCGACTGAGGAGCTAGACAGGGTGATTGGAAGAGAGAGATGGGTGGAAGAGAAGGACATTGTTGACTTGCCTTTCATTGATGCCATTACCAAGGAAACCATGAGGCTCCATCCTGTGGCACCCATGCTGGTGCCAAGACTAGCACGTGAAGATTGCCAAGTTGCTGGCTATGACATTCCTAAGGGCACCAGAATCCTAGTGAGTGTGTGGACAATAGGAAGAGACCCTACCTTATGGGACAACCCAGATGAGTTTTGCCCTGAGAGGTTCATCGGCAGGGACATTGATGTCAAAGGCCAAGACTTCGAGCTTTTGCCATTTGGGTCAGGCAGGAGGATGTGCCCTGGTTACAGTCTTGGCATCAAGGTCATTCATTCAAGTCTGGCTAATCTGTTACATGGGTTTACATGGAGATTGCCTGATGGCATGAAGAAAGAGGATTTGAGCATGGAAGAGATTTTTGGGCTTTCAACACCCAAAAAATTCCCCCTTGTCGCTGTCACCGAACCTCGTCTTCCTGCTCATCTATACTCCCTCTGA

Protein Analysis

499

Amino Acids

57.08

Weight (kDa)

8.73

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 479 1.7e-91 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1247
AccB1I GGYRCC 4 cut(s) 375, 1078, 1090, 1145
AccB7I CCANNNNNTGG 2 cut(s) 15, 1075
AccBSI CCGCTC 1 cut(s) 165
AciI CCGC 9 cut(s) 33, 70, 79, 82, 85, 163, 298, 314, 885
AclI AACGTT 1 cut(s) 508
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 212, 1442
AcvI CACGTG 1 cut(s) 1106
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 2 cut(s) 545, 680
AfiI CCNNNNNNNGG 4 cut(s) 15, 128, 294, 1075
AgsI TTSAA 9 cut(s) 251, 589, 631, 645, 752, 830, 955, 1338, 1431
AjnI CCWGG 4 cut(s) 35, 116, 378, 1303
AjuI GAANNNNNNNTTGG 2 cut(s) 1404, 1436
Alw21I GWGCWC 3 cut(s) 49, 899, 933
Alw26I GTCTC 1 cut(s) 1176
AlwI GGATC 1 cut(s) 812
ApaI GGGCCC 1 cut(s) 198
ApeKI GCWGC 3 cut(s) 29, 311, 805
ApoI RAATTY 2 cut(s) 212, 1442
AspLEI GCGC 1 cut(s) 378
AsuC2I CCSGG 4 cut(s) 105, 227, 295, 578
AsuHPI GGTGA 4 cut(s) 277, 650, 994, 1453
AvaII GGWCC 4 cut(s) 219, 240, 354, 871
AxyI CCTNAGG 1 cut(s) 1140
BaeGI GKGCMC 3 cut(s) 198, 1148, 1304
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 4 cut(s) 375, 1078, 1090, 1145
BanII GRGCYC 5 cut(s) 49, 198, 578, 899, 933
BarI GAAGNNNNNNTAC 2 cut(s) 1171, 1203
BbrPI CACGTG 1 cut(s) 1106
BbsI GAAGAC 1 cut(s) 1466
Bbv12I GWGCWC 3 cut(s) 49, 899, 933
BbvI GCAGC 3 cut(s) 41, 323, 817
BccI CCATC 6 cut(s) 131, 176, 206, 993, 1077, 1376
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 4 cut(s) 37, 118, 380, 1305
BcnI CCSGG 4 cut(s) 105, 227, 295, 578
BcoDI GTCTC 1 cut(s) 1176
BfaI CTAG 5 cut(s) 50, 425, 974, 1100, 1157
BfoI RGCGCY 1 cut(s) 379
BisI GCNGC 7 cut(s) 30, 33, 82, 85, 299, 312, 806
BlpI GCTNAGC 1 cut(s) 898
BlsI GCNGC 7 cut(s) 31, 34, 83, 86, 300, 313, 807
Bme1390I CCNGG 8 cut(s) 37, 105, 118, 227, 295, 380, 578, 1305
Bme18I GGWCC 4 cut(s) 219, 240, 354, 871
BmiI GGNNCC 9 cut(s) 196, 220, 241, 356, 377, 1067, 1080, 1092, 1147
BmrFI CCNGG 8 cut(s) 37, 105, 118, 227, 295, 380, 578, 1305
BmsI GCATC 4 cut(s) 405, 553, 1030, 1329
BpiI GAAGAC 1 cut(s) 1466
Bpu1102I GCTNAGC 1 cut(s) 898
BpuEI CTTGAG 1 cut(s) 860
BpuMI CCSGG 4 cut(s) 105, 227, 295, 578
BsaAI YACGTR 1 cut(s) 1106
BsaHI GRCGYC 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 1176
BsaJI CCNNGG 6 cut(s) 116, 258, 558, 650, 1050, 1303
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 128, 294, 1075
Bse21I CCTNAGG 1 cut(s) 1140
BseBI CCWGG 4 cut(s) 37, 118, 380, 1305
BseDI CCNNGG 6 cut(s) 116, 258, 558, 650, 1050, 1303
BseGI GGATG 6 cut(s) 168, 568, 745, 799, 1069, 1302
BseLI CCNNNNNNNGG 4 cut(s) 15, 128, 294, 1075
BseMII CTCAG 5 cut(s) 608, 881, 912, 957, 1212
BseRI GAGGAG 2 cut(s) 53, 983
BseSI GKGCMC 3 cut(s) 198, 1148, 1304
BseXI GCAGC 3 cut(s) 41, 323, 817
BseYI CCCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 231
BshNI GGYRCC 4 cut(s) 375, 1078, 1090, 1145
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 3 cut(s) 49, 899, 933
BsiSI CCGG 4 cut(s) 105, 227, 294, 578
BslFI GGGAC 4 cut(s) 340, 901, 1211, 1253
BslI CCNNNNNNNGG 4 cut(s) 15, 128, 294, 1075
BsmAI GTCTC 1 cut(s) 1176
BsmFI GGGAC 4 cut(s) 340, 901, 1211, 1253
Bso31I GGTCTC 1 cut(s) 1176
Bsp120I GGGCCC 1 cut(s) 194
Bsp1286I GDGCHC 7 cut(s) 49, 198, 578, 899, 933, 1148, 1304
Bsp143I GATC 1 cut(s) 817
Bsp1720I GCTNAGC 1 cut(s) 898
BspACI CCGC 9 cut(s) 33, 70, 79, 82, 85, 163, 298, 314, 885
BspCNI CTCAG 5 cut(s) 609, 880, 911, 958, 1213
BspLI GGNNCC 9 cut(s) 196, 220, 241, 356, 377, 1067, 1080, 1092, 1147
BspPI GGATC 1 cut(s) 812
BspT107I GGYRCC 4 cut(s) 375, 1078, 1090, 1145
BspTNI GGTCTC 1 cut(s) 1176
BsrBI CCGCTC 1 cut(s) 165
BssECI CCNNGG 6 cut(s) 116, 258, 558, 650, 1050, 1303
BssMI GATC 1 cut(s) 817
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 4 cut(s) 258, 558, 650, 1050
Bst2UI CCWGG 4 cut(s) 37, 118, 380, 1305
Bst4CI ACNGT 2 cut(s) 910, 1313
Bst6I CTCTTC 7 cut(s) 62, 442, 447, 985, 1002, 1174, 1407
BstACI GRCGYC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 1106
BstC8I GCNNGC 6 cut(s) 89, 316, 320, 810, 883, 1126
BstDEI CTNAG 7 cut(s) 470, 617, 867, 898, 966, 1140, 1221
BstF5I GGATG 6 cut(s) 168, 568, 745, 799, 1069, 1302
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 1 cut(s) 820
BstMAI GTCTC 1 cut(s) 1176
BstMBI GATC 1 cut(s) 817
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 6 cut(s) 78, 97, 202, 420, 613, 805
BstNI CCWGG 4 cut(s) 37, 118, 380, 1305
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 8 cut(s) 35, 103, 116, 225, 293, 378, 576, 1303
BstSLI GKGCMC 3 cut(s) 198, 1148, 1304
BstV1I GCAGC 3 cut(s) 41, 323, 817
BstV2I GAAGAC 1 cut(s) 1466
BstXI CCANNNNNNTGG 3 cut(s) 117, 191, 1124
Bsu36I CCTNAGG 1 cut(s) 1140
BtsCI GGATG 6 cut(s) 168, 568, 745, 799, 1069, 1302
Cac8I GCNNGC 6 cut(s) 89, 316, 320, 810, 883, 1126
CfoI GCGC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 544, 679
CviQI GTAC 2 cut(s) 544, 679
DdeI CTNAG 7 cut(s) 470, 617, 867, 898, 966, 1140, 1221
DinI GGCGCC 1 cut(s) 377
DpnI GATC 1 cut(s) 819
DpnII GATC 1 cut(s) 817
DrdI GACNNNNNNGTC 1 cut(s) 1247
DseDI GACNNNNNNGTC 1 cut(s) 1247
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 7 cut(s) 62, 442, 447, 985, 1002, 1174, 1407
EarI CTCTTC 7 cut(s) 62, 442, 447, 985, 1002, 1174, 1407
EciI GGCGGA 1 cut(s) 68
Ecl136II GAGCTC 3 cut(s) 47, 897, 931
Eco130I CCWWGG 4 cut(s) 258, 558, 650, 1050
Eco147I AGGCCT 2 cut(s) 263, 860
Eco24I GRGCYC 5 cut(s) 49, 198, 578, 899, 933
Eco31I GGTCTC 1 cut(s) 1176
Eco47I GGWCC 4 cut(s) 219, 240, 354, 871
Eco53kI GAGCTC 3 cut(s) 47, 897, 931
Eco72I CACGTG 1 cut(s) 1106
Eco81I CCTNAGG 1 cut(s) 1140
EcoICRI GAGCTC 3 cut(s) 47, 897, 931
EcoO109I RGGNCCY 3 cut(s) 219, 240, 871
EcoRII CCWGG 4 cut(s) 35, 116, 378, 1303
EcoT14I CCWWGG 4 cut(s) 258, 558, 650, 1050
EcoT38I GRGCYC 5 cut(s) 49, 198, 578, 899, 933
EgeI GGCGCC 1 cut(s) 377
EheI GGCGCC 1 cut(s) 377
ErhI CCWWGG 4 cut(s) 258, 558, 650, 1050
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 4 cut(s) 340, 901, 1211, 1253
FauI CCCGC 3 cut(s) 77, 307, 878
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 7 cut(s) 30, 33, 82, 85, 299, 312, 806
FokI GGATG 6 cut(s) 155, 575, 752, 806, 1056, 1309
FriOI GRGCYC 5 cut(s) 49, 198, 578, 899, 933
Fsp4HI GCNGC 7 cut(s) 30, 33, 82, 85, 299, 312, 806
FspBI CTAG 5 cut(s) 50, 425, 974, 1100, 1157
GlaI GCGC 1 cut(s) 377
GluI GCNGC 7 cut(s) 30, 33, 82, 85, 299, 312, 806
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 379
HapII CCGG 4 cut(s) 105, 227, 294, 578
HhaI GCGC 1 cut(s) 378
Hin1I GRCGYC 1 cut(s) 376
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HindIII AAGCTT 2 cut(s) 89, 836
HinfI GANTC 5 cut(s) 428, 485, 641, 852, 1152
HpaII CCGG 4 cut(s) 105, 227, 294, 578
HphI GGTGA 4 cut(s) 277, 650, 994, 1453
Hpy166II GTNNAC 4 cut(s) 546, 1024, 1170, 1365
Hpy188I TCNGA 4 cut(s) 343, 446, 928, 1499
Hpy188III TCNNGA 3 cut(s) 589, 869, 955
Hpy8I GTNNAC 4 cut(s) 546, 1024, 1170, 1365
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 7 cut(s) 232, 274, 298, 688, 754, 952, 1006
HpyCH4III ACNGT 2 cut(s) 910, 1313
HpyCH4IV ACGT 2 cut(s) 508, 1105
HpyCH4V TGCA 7 cut(s) 29, 205, 311, 396, 673, 779, 805
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 97, 202, 420, 613, 805
HpyF3I CTNAG 7 cut(s) 470, 617, 867, 898, 966, 1140, 1221
HpySE526I ACGT 2 cut(s) 508, 1105
Hsp92I GRCGYC 1 cut(s) 376
HspAI GCGC 1 cut(s) 376
KasI GGCGCC 1 cut(s) 375
Kzo9I GATC 1 cut(s) 817
LmnI GCTCC 8 cut(s) 44, 170, 403, 727, 928, 936, 970, 1071
Lsp1109I GCAGC 3 cut(s) 41, 323, 817
LweI GCATC 4 cut(s) 405, 553, 1030, 1329
MaeI CTAG 5 cut(s) 50, 425, 974, 1100, 1157
MaeII ACGT 2 cut(s) 508, 1105
MaeIII GTNAC 6 cut(s) 19, 283, 904, 1307, 1353, 1459
MalI GATC 1 cut(s) 819
MbiI CCGCTC 1 cut(s) 165
MboI GATC 1 cut(s) 817
MhlI GDGCHC 7 cut(s) 49, 198, 578, 899, 933, 1148, 1304
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 6 cut(s) 94, 212, 306, 645, 876, 1442
MluNI TGGCCA 1 cut(s) 257
Mly113I GGCGCC 1 cut(s) 376
MlyI GAGTC 3 cut(s) 437, 494, 861
MmeI TCCRAC 1 cut(s) 556
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 2 cut(s) 93, 834
MslI CAYNNNNRTG 1 cut(s) 1088
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 2 cut(s) 314, 902
MspI CCGG 4 cut(s) 105, 227, 294, 578
MspR9I CCNGG 8 cut(s) 37, 105, 118, 227, 295, 380, 578, 1305
MvaI CCWGG 4 cut(s) 37, 118, 380, 1305
MwoI GCNNNNNNNGC 6 cut(s) 78, 97, 202, 420, 613, 805
NarI GGCGCC 1 cut(s) 376
NciI CCSGG 4 cut(s) 105, 227, 295, 578
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 817
NlaIV GGNNCC 9 cut(s) 196, 220, 241, 356, 377, 1067, 1080, 1092, 1147
NmuCI GTSAC 3 cut(s) 283, 904, 1459
NspI RCATGY 1 cut(s) 734
PceI AGGCCT 2 cut(s) 263, 860
PcsI WCGNNNNNNNCGW 1 cut(s) 1461
PfeI GAWTC 2 cut(s) 641, 1152
PflMI CCANNNNNTGG 2 cut(s) 15, 1075
PkrI GCNGC 7 cut(s) 31, 34, 83, 86, 300, 313, 807
PleI GAGTC 3 cut(s) 436, 493, 860
PluTI GGCGCC 1 cut(s) 379
PmaCI CACGTG 1 cut(s) 1106
PmlI CACGTG 1 cut(s) 1106
PpsI GAGTC 3 cut(s) 436, 493, 860
Ppu21I YACGTR 1 cut(s) 1106
PpuMI RGGWCCY 3 cut(s) 219, 240, 871
Psp124BI GAGCTC 3 cut(s) 49, 899, 933
Psp1406I AACGTT 1 cut(s) 508
Psp5II RGGWCCY 3 cut(s) 219, 240, 871
Psp6I CCWGG 4 cut(s) 35, 116, 378, 1303
PspCI CACGTG 1 cut(s) 1106
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 4 cut(s) 35, 116, 378, 1303
PspN4I GGNNCC 9 cut(s) 196, 220, 241, 356, 377, 1067, 1080, 1092, 1147
PspOMI GGGCCC 1 cut(s) 194
PspPPI RGGWCCY 3 cut(s) 219, 240, 871
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 2 cut(s) 545, 680
RsaNI GTAC 2 cut(s) 544, 679
RseI CAYNNNNRTG 1 cut(s) 1088
SacI GAGCTC 3 cut(s) 49, 899, 933
SaqAI TTAA 2 cut(s) 93, 834
SatI GCNGC 7 cut(s) 30, 33, 82, 85, 299, 312, 806
Sau3AI GATC 1 cut(s) 817
SchI GAGTC 3 cut(s) 437, 494, 861
ScrFI CCNGG 8 cut(s) 37, 105, 118, 227, 295, 380, 578, 1305
SduI GDGCHC 7 cut(s) 49, 198, 578, 899, 933, 1148, 1304
SfaNI GCATC 4 cut(s) 405, 553, 1030, 1329
SfoI GGCGCC 1 cut(s) 377
SinI GGWCC 4 cut(s) 219, 240, 354, 871
SmiMI CAYNNNNRTG 1 cut(s) 1088
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
Sse9I AATT 6 cut(s) 94, 212, 306, 645, 876, 1442
SseBI AGGCCT 2 cut(s) 263, 860
SsiI CCGC 9 cut(s) 33, 70, 79, 82, 85, 163, 298, 314, 885
SspDI GGCGCC 1 cut(s) 375
SspI AATATT 1 cut(s) 634
SspMI CTAG 5 cut(s) 50, 425, 974, 1100, 1157
SstI GAGCTC 3 cut(s) 49, 899, 933
StuI AGGCCT 2 cut(s) 263, 860
StyD4I CCNGG 8 cut(s) 35, 103, 116, 225, 293, 378, 576, 1303
StyI CCWWGG 4 cut(s) 258, 558, 650, 1050
TaaI ACNGT 2 cut(s) 910, 1313
TaiI ACGT 2 cut(s) 511, 1108
TaqI TCGA 1 cut(s) 1266
TasI AATT 6 cut(s) 94, 212, 306, 645, 876, 1442
TatI WGTACW 1 cut(s) 543
TauI GCSGC 4 cut(s) 35, 84, 87, 301
TfiI GAWTC 2 cut(s) 641, 1152
Tru1I TTAA 2 cut(s) 93, 834
Tru9I TTAA 2 cut(s) 93, 834
TseFI GTSAC 3 cut(s) 283, 904, 1459
TseI GCWGC 3 cut(s) 29, 311, 805
Tsp45I GTSAC 3 cut(s) 283, 904, 1459
TspDTI ATGAA 7 cut(s) 450, 707, 756, 1024, 1219, 1322, 1403
TspGWI ACGGA 1 cut(s) 235
Van91I CCANNNNNTGG 2 cut(s) 15, 1075
VpaK11BI GGWCC 4 cut(s) 219, 240, 354, 871
XapI RAATTY 2 cut(s) 212, 1442
XceI RCATGY 1 cut(s) 734
XspI CTAG 5 cut(s) 50, 425, 974, 1100, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.