RLG00000021515

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016377
Physical Location & Seq
Reverse (-)
76053864 .. 76055468
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021515

Sequence Viewer

Length: 1605 bp
ATGCTGAGGTATAACTCAGGGTTCAAGCAAACTGACTATAAAGTATGCTACAGATCTAGAGAAGATAAAAAATGCAATAGAAAAATAAGAGACCCTAACTTCACTGATCTTCCAAGTCGAGAGCTCCAAGACCGAATCAACGGTCAAATAGTTGTCAGTTTTCAGAGAAATTCGAGAAAGATAACAACCATCTTAGAAATGCAGAAGGAAAGCACCTCTAAGCCATTTAGCCTTCTTTTCACAATGTTATGTGCTATTCTCCTTGTCAGCCCCCTTACAGTTTTCATTTTCAGCTTCACTAGTTCGTATCCACAATCCATCTTTGCTACTAACTCCAACATCTCTCTCTCCCATGGCCTAATTGCTTTACCTGATTCGCTGCGTAGCGAAATCTCTCATTTGCAGATCAAACTGGGTCTTTTACTGGAGCAGCTGCATAATGAGACTTCAGAATCAAAAGTGATCACAAAGTTTTCAGAGCAGGTACTTTACATTGCCATTTCTTTGGACAAAATTGCTGTTAGCTTATCAGAGAGCAATAAGAATTCTCCCCCCGCTAATGATGAGGTAAGCAATGTGGATGAAGATTTCAGTGATCCCGAAGAAGGCGAAGCCGAAGAACAGTTTATGAGTGGGAATGTCTTCAAATCAGGTGAGATTCGTAGTTACATGTCACCAAAACCAAACAGGCTAGTTGGGAAGAAAAATTTTCTTGGGGTGGATGCACTAACTCCATCAATTGGGTTGGCTTGTGCCAAAATGGCCTCGAACTTGGACCGGTTTATGAGTTACAAGGTTCACAGTGCGTGTCCAGATGATTCACAAATAGCTCAGAGGCTTATAGTTCACGGTTGTGATCCATTGCCAAGAAGAAGATGCTTCACAAAATCACCTCCACACTACACTAAGCCATTTCCTATAAACGCCTCCCTTTGGACTCAACCTAGTGATGCCAACATCTTATGGAACAGTTACAAGTGCAAAGACTACTCTTGCCTTGTTTCTAAAGAAACCACAGACAGAAGAGGGTTCTTCAAATGCTCAAGCTGTTTCAACATTTCACAACGTGGGTGGAATGTTCCTACGAATGAGTCTGTACCAGCAGAGTTCACCATTGATGAAGTCCTTAGCTTAAAGCCGGGGGAGATAAGAATCGGCCTAGACTATAGCCCTACAACTGGTACTTTTGCTGCTGTGATGAGGGAAAAAAATGTCACCATTGCATCAAGTACACTAAACTTAGGTGCTCCTTTCAATGAGGTCATAGCCTTAAGAGGCCTTCTTCCTCTTTACACATCAATTGGCTCAAGATTGCCTTTCTTTGACAATACCCTTGACATTATCCATTCCACTTTGTTCTTGGATGGCTGGATAGGAATTGAACTTCTTCAATTTGTTCTGTTTGATTGGGATCGCGTCCTTCGGCCAAAGGGTCTTCTTTGGATAGACAGGTTCTTCTGTCATAAAGAGGATATGAAGCTCTATTTGGAGGAGTTTAACAGGTTAGGCTACAAGGCACTACTATGGAGGGTAGTACCCAAGAATGATAAGCTTGGAGATGAGCTCTTCTTCTCAGCTGTATTGGAGAAGCCAATTAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

535

Amino Acids

60.6

Weight (kDa)

8.14

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46550
malus_domestica MD17G1063800.v1.1
prunus_persica Prupe.3G250700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0165191
rosa_laevigata RLG00000021515
rosa_multiflora Rmu_sc0001097.1_g000045 Rmu_sc0012583.1_g000003
rosa_roxburghii Rroxscaffold_2G00085950
rosa_rugosa Rorug02G0513000
rosa_samantha Rh2AG581300 Rh2BG592600 Rh2CG563300 Rh2DG602600
rosa_wichuraiana Rw0G008410 Rw2G048280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 740
AccII CGCG 1 cut(s) 1416
AciI CCGC 1 cut(s) 555
AclWI GGATC 3 cut(s) 590, 851, 1419
AcoI YGGCCR 1 cut(s) 1424
AcsI RAATTY 3 cut(s) 169, 544, 706
AcuI CTGAAG 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 1067
AfaI GTAC 5 cut(s) 486, 1098, 1183, 1231, 1536
AfiI CCNNNNNNNGG 5 cut(s) 605, 740, 933, 1178, 1598
AflII CTTAAG 1 cut(s) 1270
AflIII ACRYGT 1 cut(s) 669
AgeI ACCGGT 1 cut(s) 777
AgsI TTSAA 7 cut(s) 25, 646, 1036, 1054, 1255, 1382, 1391
AhlI ACTAGT 1 cut(s) 299
AjuI GAANNNNNNNTTGG 2 cut(s) 1469, 1501
AleI CACNNNNGTG 1 cut(s) 852
Alw21I GWGCWC 3 cut(s) 126, 1249, 1566
Alw26I GTCTC 2 cut(s) 84, 437
AlwI GGATC 3 cut(s) 590, 851, 1419
AoxI GGCC 5 cut(s) 355, 762, 1156, 1276, 1424
ApeKI GCWGC 4 cut(s) 379, 430, 433, 1190
ApoI RAATTY 3 cut(s) 169, 544, 706
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AsiGI ACCGGT 1 cut(s) 777
Asp700I GAANNNNTTC 2 cut(s) 641, 1386
AspS9I GGNCC 1 cut(s) 775
AsuC2I CCSGG 1 cut(s) 1140
AsuHPI GGTGA 5 cut(s) 665, 666, 882, 1102, 1207
AvaII GGWCC 1 cut(s) 775
BanII GRGCYC 2 cut(s) 126, 1566
BbsI GAAGAC 2 cut(s) 634, 1427
Bbv12I GWGCWC 3 cut(s) 126, 1249, 1566
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 4 cut(s) 366, 420, 442, 1177
BccI CCATC 4 cut(s) 197, 326, 742, 1358
BciVI GTATCC 1 cut(s) 318
BclI TGATCA 1 cut(s) 462
BcnI CCSGG 1 cut(s) 1140
BcoDI GTCTC 2 cut(s) 84, 437
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 5 cut(s) 57, 300, 692, 945, 1160
BfmI CTRYAG 2 cut(s) 49, 1165
BfrI CTTAAG 1 cut(s) 1270
BfuAI ACCTGC 1 cut(s) 472
BfuI GTATCC 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 761
BglII AGATCT 1 cut(s) 53
BisI GCNGC 4 cut(s) 380, 431, 434, 1191
BlsI GCNGC 4 cut(s) 381, 432, 435, 1192
Bme1390I CCNGG 1 cut(s) 1140
Bme18I GGWCC 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 775
BmrFI CCNGG 1 cut(s) 1140
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 4 cut(s) 712, 866, 940, 1232
BmuI ACTGGG 1 cut(s) 422
BpiI GAAGAC 2 cut(s) 634, 1427
BplI GAGNNNNNCTC 2 cut(s) 1548, 1580
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 2 cut(s) 5, 1127
BpuEI CTTGAG 2 cut(s) 1027, 1291
BpuMI CCSGG 1 cut(s) 1140
BsaBI GATNNNNATC 2 cut(s) 1151, 1410
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 352, 1139
BsaWI WCCGGW 1 cut(s) 777
Bsc4I CCNNNNNNNGG 5 cut(s) 605, 740, 933, 1178, 1598
Bse118I RCCGGY 1 cut(s) 777
Bse1I ACTGG 3 cut(s) 417, 429, 1183
Bse3DI GCAATG 4 cut(s) 492, 580, 860, 1218
Bse8I GATNNNNATC 2 cut(s) 1151, 1410
BseDI CCNNGG 2 cut(s) 352, 1139
BseGI GGATG 3 cut(s) 586, 727, 1369
BseJI GATNNNNATC 2 cut(s) 1151, 1410
BseLI CCNNNNNNNGG 5 cut(s) 605, 740, 933, 1178, 1598
BseMI GCAATG 4 cut(s) 492, 580, 860, 1218
BseMII CTCAG 3 cut(s) 30, 845, 1587
BseNI ACTGG 3 cut(s) 417, 429, 1183
BseRI GAGGAG 1 cut(s) 1505
BseXI GCAGC 4 cut(s) 366, 420, 442, 1177
Bsh1236I CGCG 1 cut(s) 1416
BshFI GGCC 5 cut(s) 357, 764, 1158, 1278, 1426
BshTI ACCGGT 1 cut(s) 777
BsiHKAI GWGCWC 3 cut(s) 126, 1249, 1566
BsiSI CCGG 2 cut(s) 778, 1139
BslI CCNNNNNNNGG 5 cut(s) 605, 740, 933, 1178, 1598
BsmAI GTCTC 2 cut(s) 84, 437
BsnI GGCC 5 cut(s) 357, 764, 1158, 1278, 1426
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 3 cut(s) 126, 1249, 1566
Bsp143I GATC 7 cut(s) 53, 106, 405, 462, 595, 856, 1411
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 1 cut(s) 555
BspANI GGCC 5 cut(s) 357, 764, 1158, 1278, 1426
BspCNI CTCAG 3 cut(s) 29, 844, 1586
BspFNI CGCG 1 cut(s) 1416
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 3 cut(s) 590, 851, 1419
BspQI GCTCTTC 1 cut(s) 1571
BspTI CTTAAG 1 cut(s) 1270
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 4 cut(s) 492, 580, 860, 1218
BsrFI RCCGGY 1 cut(s) 777
BsrI ACTGG 3 cut(s) 417, 429, 1183
BssAI RCCGGY 1 cut(s) 777
BssECI CCNNGG 2 cut(s) 352, 1139
BssMI GATC 7 cut(s) 53, 106, 405, 462, 595, 856, 1411
BssT1I CCWWGG 1 cut(s) 352
Bst4CI ACNGT 6 cut(s) 143, 280, 624, 803, 851, 971
Bst6I CTCTTC 2 cut(s) 1018, 1571
BstAFI CTTAAG 1 cut(s) 1270
BstDEI CTNAG 9 cut(s) 5, 16, 193, 219, 831, 906, 1127, 1240, 1573
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 3 cut(s) 586, 727, 1369
BstFNI CGCG 1 cut(s) 1416
BstKTI GATC 7 cut(s) 56, 109, 408, 465, 598, 859, 1414
BstMAI GTCTC 2 cut(s) 84, 437
BstMBI GATC 7 cut(s) 53, 106, 405, 462, 595, 856, 1411
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 1138
BstSFI CTRYAG 2 cut(s) 49, 1165
BstUI CGCG 1 cut(s) 1416
BstV1I GCAGC 4 cut(s) 366, 420, 442, 1177
BstV2I GAAGAC 2 cut(s) 634, 1427
BstX2I RGATCY 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 1 cut(s) 53
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 5 cut(s) 357, 764, 1158, 1278, 1426
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 3 cut(s) 586, 727, 1369
BtsIMutI CAGTG 3 cut(s) 102, 598, 808
BveI ACCTGC 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 777
Cfr13I GGNCC 1 cut(s) 775
CseI GACGC 1 cut(s) 1405
Csp6I GTAC 5 cut(s) 485, 1097, 1182, 1230, 1535
CspAI ACCGGT 1 cut(s) 777
CspCI CAANNNNNGTGG 2 cut(s) 1052, 1087
CviAII CATG 2 cut(s) 353, 670
CviQI GTAC 5 cut(s) 485, 1097, 1182, 1230, 1535
DdeI CTNAG 9 cut(s) 5, 16, 193, 219, 831, 906, 1127, 1240, 1573
DpnI GATC 7 cut(s) 55, 108, 407, 464, 597, 858, 1413
DpnII GATC 7 cut(s) 53, 106, 405, 462, 595, 856, 1411
DraIII CACNNNGTG 1 cut(s) 1067
EaeI YGGCCR 1 cut(s) 1424
Eam1104I CTCTTC 2 cut(s) 1018, 1571
EarI CTCTTC 2 cut(s) 1018, 1571
Ecl136II GAGCTC 2 cut(s) 124, 1564
Eco130I CCWWGG 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 1278
Eco24I GRGCYC 2 cut(s) 126, 1566
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 775
Eco53kI GAGCTC 2 cut(s) 124, 1564
Eco57I CTGAAG 1 cut(s) 432
EcoICRI GAGCTC 2 cut(s) 124, 1564
EcoRI GAATTC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 352
EcoT38I GRGCYC 2 cut(s) 126, 1566
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 2 cut(s) 356, 673
FalI AAGNNNNNCTT 2 cut(s) 1300, 1332
FatI CATG 2 cut(s) 352, 669
FauI CCCGC 1 cut(s) 562
FbaI TGATCA 1 cut(s) 462
Fnu4HI GCNGC 4 cut(s) 380, 431, 434, 1191
FokI GGATG 3 cut(s) 593, 734, 1376
FriOI GRGCYC 2 cut(s) 126, 1566
Fsp4HI GCNGC 4 cut(s) 380, 431, 434, 1191
FspBI CTAG 5 cut(s) 57, 300, 692, 945, 1160
GluI GCNGC 4 cut(s) 380, 431, 434, 1191
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 5 cut(s) 357, 764, 1158, 1278, 1426
HapII CCGG 2 cut(s) 778, 1139
HgaI GACGC 1 cut(s) 1405
Hin1II CATG 2 cut(s) 356, 673
HindIII AAGCTT 1 cut(s) 1550
HinfI GANTC 8 cut(s) 135, 374, 452, 658, 818, 937, 1091, 1152
HpaII CCGG 2 cut(s) 778, 1139
HphI GGTGA 5 cut(s) 665, 666, 882, 1102, 1207
Hpy166II GTNNAC 4 cut(s) 799, 847, 1110, 1232
Hpy188I TCNGA 5 cut(s) 165, 451, 478, 532, 834
Hpy188III TCNNGA 6 cut(s) 57, 119, 174, 599, 812, 1308
Hpy8I GTNNAC 4 cut(s) 799, 847, 1110, 1232
HpyAV CCTTC 5 cut(s) 199, 242, 599, 1289, 1430
HpyCH4III ACNGT 6 cut(s) 143, 280, 624, 803, 851, 971
HpyCH4IV ACGT 1 cut(s) 1066
HpyCH4V TGCA 7 cut(s) 75, 202, 403, 436, 725, 981, 1223
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 9 cut(s) 5, 16, 193, 219, 831, 906, 1127, 1240, 1573
HpySE526I ACGT 1 cut(s) 1066
Hsp92II CATG 2 cut(s) 356, 673
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 7 cut(s) 53, 106, 405, 462, 595, 856, 1411
LguI GCTCTTC 1 cut(s) 1571
LmnI GCTCC 3 cut(s) 129, 427, 1252
Lsp1109I GCAGC 4 cut(s) 366, 420, 442, 1177
LweI GCATC 4 cut(s) 712, 866, 940, 1232
MaeI CTAG 5 cut(s) 57, 300, 692, 945, 1160
MaeII ACGT 1 cut(s) 1066
MaeIII GTNAC 5 cut(s) 665, 672, 788, 971, 1213
MalI GATC 7 cut(s) 55, 108, 407, 464, 597, 858, 1413
MboI GATC 7 cut(s) 53, 106, 405, 462, 595, 856, 1411
MfeI CAATTG 2 cut(s) 738, 1299
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 3 cut(s) 126, 1249, 1566
MlyI GAGTC 2 cut(s) 931, 1100
MmeI TCCRAC 1 cut(s) 360
MroXI GAANNNNTTC 2 cut(s) 641, 1386
MseI TTAA 3 cut(s) 1133, 1271, 1497
MslI CAYNNNNRTG 2 cut(s) 852, 1522
MspA1I CMGCKG 2 cut(s) 433, 1577
MspCI CTTAAG 1 cut(s) 1270
MspI CCGG 2 cut(s) 778, 1139
MspR9I CCNGG 1 cut(s) 1140
MunI CAATTG 2 cut(s) 738, 1299
MvnI CGCG 1 cut(s) 1416
MwoI GCNNNNNNNGC 1 cut(s) 761
NciI CCSGG 1 cut(s) 1140
NcoI CCATGG 1 cut(s) 352
NdeII GATC 7 cut(s) 53, 106, 405, 462, 595, 856, 1411
NlaIII CATG 2 cut(s) 356, 673
NmuCI GTSAC 2 cut(s) 672, 1213
NspI RCATGY 1 cut(s) 673
OliI CACNNNNGTG 1 cut(s) 852
PceI AGGCCT 1 cut(s) 1278
PciI ACATGT 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 1571
PdmI GAANNNNTTC 2 cut(s) 641, 1386
PfeI GAWTC 6 cut(s) 135, 374, 452, 658, 818, 1152
PflMI CCANNNNNTGG 1 cut(s) 740
PinAI ACCGGT 1 cut(s) 777
PkrI GCNGC 4 cut(s) 381, 432, 435, 1192
PleI GAGTC 2 cut(s) 931, 1099
PpsI GAGTC 2 cut(s) 931, 1099
PscI ACATGT 1 cut(s) 669
Psp124BI GAGCTC 2 cut(s) 126, 1566
PspPI GGNCC 1 cut(s) 775
PsuI RGATCY 1 cut(s) 53
PvuII CAGCTG 2 cut(s) 433, 1577
RsaI GTAC 5 cut(s) 486, 1098, 1183, 1231, 1536
RsaNI GTAC 5 cut(s) 485, 1097, 1182, 1230, 1535
RseI CAYNNNNRTG 2 cut(s) 852, 1522
SacI GAGCTC 2 cut(s) 126, 1566
SapI GCTCTTC 1 cut(s) 1571
SaqAI TTAA 3 cut(s) 1133, 1271, 1497
SatI GCNGC 4 cut(s) 380, 431, 434, 1191
Sau3AI GATC 7 cut(s) 53, 106, 405, 462, 595, 856, 1411
Sau96I GGNCC 1 cut(s) 775
SchI GAGTC 2 cut(s) 931, 1100
ScrFI CCNGG 1 cut(s) 1140
SduI GDGCHC 3 cut(s) 126, 1249, 1566
SfaNI GCATC 4 cut(s) 712, 866, 940, 1232
SfcI CTRYAG 2 cut(s) 49, 1165
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 2 cut(s) 852, 1522
SmlI CTYRAG 3 cut(s) 1042, 1270, 1306
SmoI CTYRAG 3 cut(s) 1042, 1270, 1306
SpeI ACTAGT 1 cut(s) 299
SseBI AGGCCT 1 cut(s) 1278
SsiI CCGC 1 cut(s) 555
SspMI CTAG 5 cut(s) 57, 300, 692, 945, 1160
SstI GAGCTC 2 cut(s) 126, 1566
StuI AGGCCT 1 cut(s) 1278
StyD4I CCNGG 1 cut(s) 1138
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 6 cut(s) 143, 280, 624, 803, 851, 971
TaiI ACGT 1 cut(s) 1069
TaqI TCGA 3 cut(s) 118, 173, 767
TaqII GACCGA 1 cut(s) 147
TatI WGTACW 1 cut(s) 1229
TfiI GAWTC 6 cut(s) 135, 374, 452, 658, 818, 1152
Tru1I TTAA 3 cut(s) 1133, 1271, 1497
Tru9I TTAA 3 cut(s) 1133, 1271, 1497
TscAI CASTG 3 cut(s) 109, 598, 808
TseFI GTSAC 2 cut(s) 672, 1213
TseI GCWGC 4 cut(s) 379, 430, 433, 1190
Tsp45I GTSAC 2 cut(s) 672, 1213
TspDTI ATGAA 4 cut(s) 274, 597, 1134, 1490
TspRI CASTG 3 cut(s) 109, 598, 808
Van91I CCANNNNNTGG 1 cut(s) 740
Vha464I CTTAAG 1 cut(s) 1270
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 3 cut(s) 169, 544, 706
XbaI TCTAGA 1 cut(s) 56
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 1357
XmnI GAANNNNTTC 2 cut(s) 641, 1386
XspI CTAG 5 cut(s) 57, 300, 692, 945, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.