Rmu_sc0012583.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012583.1
OG0016377
Physical Location & Seq
Forward (+)
12060 .. 13362
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012583.1_g000003.1.cds

Sequence Viewer

Length: 1303 bp
atgcagaaggaaagcgcctctaagccgtttaaatgccttctttccacaatgttatgtgctattctccttgtcagcccccttacagttttcattttcggcttcaatagttcttatcaaccatccatctttgctactaactccaacatctctctctcccatggcctaattactttacctgattcactgcatagcgaaatctctcatttgcagatcaaactgggtgttttactggagcagctgcatgatgaaacttcagaatcaaaagtgatcgcaaagttttcagagcaggtactttacattgccatttctttggacaaaattgctgttagcttatcagagagcagtaagaattctccctctgctaataatgaggtaagcaatgtggatgaagatttcagtgatcccgaagaaggtgaagccgaagaacagtttatgagtgggaatgtcttcaaatcaggtgagattcgtagttacatttcaccaaaaccaaacaggctagttgggaagaaaaattttcttggggtggatgcactaactccatcaattgggttggcttgtgccaaaatggcctccatcttggaccggtttatgagttaccaggttcacagtgcgtgtccagatgattcgcaaatagcgcagaagcttatagttcacggttgtgatccattgccaagaagaagatgcttcacaaaatcacctccacactacactaagccatttcctataaacgcctccctttggactcaacctagtgatgccaacatcttatggaacaattacaagtgcaaagactactcttgccttgtttctaaagaaaccgcagacagaagagggttcttcaaatgctcaagctgtttcaacatttcacaatgtggatggaatgttcctacgaatgagtctgtatcagcagagttcaccattgatgaagtccttagcttaaagccgggggagataagaatcggcctagactatagccctacaactggtacttttgctgctgtgatgagggaaaaaaatgtcaccattgcatcaagtacactaaacttaggtgctcctttcaatgaggtcatagccttaagaggccttcttcctctttacacatcaattggctcaagattgcctttctttgacaatacccttgacattatccattccactttgttcttggatggctggataggaattgaactccttcaatttgttctgtttgattgggatcgcatccttcggccaaagggtcttctttggatagacaggttcttctgtcataaagaggatatgaagctgtatttggaggagttta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

434

Amino Acids

48.49

Weight (kDa)

5.57

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46550
malus_domestica MD17G1063800.v1.1
prunus_persica Prupe.3G250700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0165191
rosa_laevigata RLG00000021515
rosa_multiflora Rmu_sc0001097.1_g000045 Rmu_sc0012583.1_g000003
rosa_roxburghii Rroxscaffold_2G00085950
rosa_rugosa Rorug02G0513000
rosa_samantha Rh2AG581300 Rh2BG592600 Rh2CG563300 Rh2DG602600
rosa_wichuraiana Rw0G008410 Rw2G048280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccB7I CCANNNNNTGG 1 cut(s) 545
AciI CCGC 1 cut(s) 819
AclWI GGATC 3 cut(s) 395, 656, 1224
AcoI YGGCCR 1 cut(s) 1229
AcsI RAATTY 2 cut(s) 349, 511
AcuI CTGAAG 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 872
AfaI GTAC 3 cut(s) 291, 988, 1036
AfiI CCNNNNNNNGG 4 cut(s) 410, 545, 738, 983
AflII CTTAAG 1 cut(s) 1075
AgeI ACCGGT 1 cut(s) 582
AgsI TTSAA 7 cut(s) 103, 451, 841, 859, 1060, 1187, 1196
AjnI CCWGG 1 cut(s) 597
AjuI GAANNNNNNNTTGG 1 cut(s) 1274
AleI CACNNNNGTG 1 cut(s) 657
AloI GAACNNNNNNTCC 2 cut(s) 867, 899
AluBI AGCT 6 cut(s) 238, 330, 643, 852, 936, 1285
AluI AGCT 6 cut(s) 238, 330, 643, 852, 936, 1285
Alw21I GWGCWC 1 cut(s) 1054
AlwI GGATC 3 cut(s) 395, 656, 1224
AoxI GGCC 5 cut(s) 160, 567, 961, 1081, 1229
ApeKI GCWGC 3 cut(s) 235, 238, 995
ApoI RAATTY 2 cut(s) 349, 511
AsiGI ACCGGT 1 cut(s) 582
Asp700I GAANNNNTTC 2 cut(s) 446, 1191
AspLEI GCGC 2 cut(s) 17, 637
AspS9I GGNCC 1 cut(s) 580
AsuC2I CCSGG 1 cut(s) 945
AsuHPI GGTGA 6 cut(s) 425, 470, 471, 687, 907, 1012
AvaII GGWCC 1 cut(s) 580
BbsI GAAGAC 2 cut(s) 439, 1232
Bbv12I GWGCWC 1 cut(s) 1054
BbvI GCAGC 3 cut(s) 225, 247, 982
BccI CCATC 6 cut(s) 127, 131, 547, 581, 870, 1163
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 599
BcnI CCSGG 1 cut(s) 945
BfaI CTAG 3 cut(s) 497, 750, 965
BfmI CTRYAG 1 cut(s) 970
BfoI RGCGCY 1 cut(s) 18
BfrI CTTAAG 1 cut(s) 1075
BfuAI ACCTGC 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 3 cut(s) 236, 239, 996
BlsI GCNGC 3 cut(s) 237, 240, 997
Bme1390I CCNGG 2 cut(s) 599, 945
Bme18I GGWCC 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 580
BmrFI CCNGG 2 cut(s) 599, 945
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 5 cut(s) 517, 671, 745, 1037, 1230
BmuI ACTGGG 1 cut(s) 227
BpiI GAAGAC 2 cut(s) 439, 1232
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 932
BpuEI CTTGAG 2 cut(s) 832, 1096
BpuMI CCSGG 1 cut(s) 945
BsaBI GATNNNNATC 2 cut(s) 956, 1215
BsaJI CCNNGG 2 cut(s) 157, 944
BsaWI WCCGGW 1 cut(s) 582
Bsc4I CCNNNNNNNGG 4 cut(s) 410, 545, 738, 983
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 3 cut(s) 222, 234, 988
Bse3DI GCAATG 4 cut(s) 297, 385, 665, 1023
Bse8I GATNNNNATC 2 cut(s) 956, 1215
BseBI CCWGG 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 157, 944
BseGI GGATG 6 cut(s) 119, 391, 532, 881, 1174, 1221
BseJI GATNNNNATC 2 cut(s) 956, 1215
BseLI CCNNNNNNNGG 4 cut(s) 410, 545, 738, 983
BseMI GCAATG 4 cut(s) 297, 385, 665, 1023
BseNI ACTGG 3 cut(s) 222, 234, 988
BseXI GCAGC 3 cut(s) 225, 247, 982
BshFI GGCC 5 cut(s) 162, 569, 963, 1083, 1231
BshTI ACCGGT 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 1054
BsiSI CCGG 2 cut(s) 583, 944
BslI CCNNNNNNNGG 4 cut(s) 410, 545, 738, 983
BsnI GGCC 5 cut(s) 162, 569, 963, 1083, 1231
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp143I GATC 5 cut(s) 210, 267, 400, 661, 1216
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 1 cut(s) 819
BspANI GGCC 5 cut(s) 162, 569, 963, 1083, 1231
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 3 cut(s) 395, 656, 1224
BspTI CTTAAG 1 cut(s) 1075
BsrDI GCAATG 4 cut(s) 297, 385, 665, 1023
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 3 cut(s) 222, 234, 988
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 2 cut(s) 157, 944
BssMI GATC 5 cut(s) 210, 267, 400, 661, 1216
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 4 cut(s) 85, 429, 608, 656
Bst6I CTCTTC 1 cut(s) 823
BstAFI CTTAAG 1 cut(s) 1075
BstDEI CTNAG 4 cut(s) 21, 711, 932, 1045
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 6 cut(s) 119, 391, 532, 881, 1174, 1221
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 637
BstKTI GATC 5 cut(s) 213, 270, 403, 664, 1219
BstMBI GATC 5 cut(s) 210, 267, 400, 661, 1216
BstMWI GCNNNNNNNGC 2 cut(s) 566, 634
BstNI CCWGG 1 cut(s) 599
BstSCI CCNGG 2 cut(s) 597, 943
BstSFI CTRYAG 1 cut(s) 970
BstV1I GCAGC 3 cut(s) 225, 247, 982
BstV2I GAAGAC 2 cut(s) 439, 1232
BstXI CCANNNNNNTGG 1 cut(s) 310
BsuRI GGCC 5 cut(s) 162, 569, 963, 1083, 1231
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 6 cut(s) 119, 391, 532, 881, 1174, 1221
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 3 cut(s) 182, 403, 613
BveI ACCTGC 1 cut(s) 277
CfoI GCGC 2 cut(s) 17, 637
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 580
CsiI ACCWGGT 1 cut(s) 597
Csp6I GTAC 3 cut(s) 290, 987, 1035
CspAI ACCGGT 1 cut(s) 582
CviAII CATG 2 cut(s) 158, 242
CviQI GTAC 3 cut(s) 290, 987, 1035
DdeI CTNAG 4 cut(s) 21, 711, 932, 1045
DpnI GATC 5 cut(s) 212, 269, 402, 663, 1218
DpnII GATC 5 cut(s) 210, 267, 400, 661, 1216
DraI TTTAAA 1 cut(s) 31
DraIII CACNNNGTG 1 cut(s) 872
EaeI YGGCCR 1 cut(s) 1229
Eam1104I CTCTTC 1 cut(s) 823
EarI CTCTTC 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 157
Eco147I AGGCCT 1 cut(s) 1083
Eco47I GGWCC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 161, 245
FalI AAGNNNNNCTT 2 cut(s) 1105, 1137
FatI CATG 2 cut(s) 157, 241
Fnu4HI GCNGC 3 cut(s) 236, 239, 996
FokI GGATG 6 cut(s) 106, 398, 539, 888, 1181, 1208
Fsp4HI GCNGC 3 cut(s) 236, 239, 996
FspBI CTAG 3 cut(s) 497, 750, 965
GlaI GCGC 2 cut(s) 16, 636
GluI GCNGC 3 cut(s) 236, 239, 996
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 5 cut(s) 162, 569, 963, 1083, 1231
HapII CCGG 2 cut(s) 583, 944
HhaI GCGC 2 cut(s) 17, 637
Hin1II CATG 2 cut(s) 161, 245
Hin6I GCGC 2 cut(s) 15, 635
HinP1I GCGC 2 cut(s) 15, 635
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 7 cut(s) 179, 257, 463, 623, 742, 896, 957
HpaII CCGG 2 cut(s) 583, 944
HphI GGTGA 6 cut(s) 425, 470, 471, 687, 907, 1012
Hpy166II GTNNAC 4 cut(s) 604, 652, 915, 1037
Hpy188I TCNGA 3 cut(s) 256, 283, 337
Hpy188III TCNNGA 3 cut(s) 404, 617, 1113
Hpy8I GTNNAC 4 cut(s) 604, 652, 915, 1037
HpyAV CCTTC 5 cut(s) 47, 404, 1094, 1202, 1235
HpyCH4III ACNGT 4 cut(s) 85, 429, 608, 656
HpyCH4V TGCA 7 cut(s) 4, 187, 208, 241, 530, 786, 1028
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 634
HpyF3I CTNAG 4 cut(s) 21, 711, 932, 1045
Hsp92II CATG 2 cut(s) 161, 245
HspAI GCGC 2 cut(s) 15, 635
Kzo9I GATC 5 cut(s) 210, 267, 400, 661, 1216
LmnI GCTCC 2 cut(s) 232, 1057
Lsp1109I GCAGC 3 cut(s) 225, 247, 982
LweI GCATC 5 cut(s) 517, 671, 745, 1037, 1230
MabI ACCWGGT 1 cut(s) 597
MaeI CTAG 3 cut(s) 497, 750, 965
MaeIII GTNAC 3 cut(s) 470, 593, 1018
MalI GATC 5 cut(s) 212, 269, 402, 663, 1218
MboI GATC 5 cut(s) 210, 267, 400, 661, 1216
MfeI CAATTG 2 cut(s) 543, 1104
MhlI GDGCHC 1 cut(s) 1054
MluCI AATT 9 cut(s) 165, 318, 349, 511, 543, 775, 1104, 1182, 1196
MlyI GAGTC 2 cut(s) 736, 905
MmeI TCCRAC 1 cut(s) 165
MroXI GAANNNNTTC 2 cut(s) 446, 1191
MseI TTAA 3 cut(s) 30, 938, 1076
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 238
MspCI CTTAAG 1 cut(s) 1075
MspI CCGG 2 cut(s) 583, 944
MspR9I CCNGG 2 cut(s) 599, 945
MunI CAATTG 2 cut(s) 543, 1104
MvaI CCWGG 1 cut(s) 599
MwoI GCNNNNNNNGC 2 cut(s) 566, 634
NciI CCSGG 1 cut(s) 945
NcoI CCATGG 1 cut(s) 157
NdeII GATC 5 cut(s) 210, 267, 400, 661, 1216
NlaIII CATG 2 cut(s) 161, 245
NmuCI GTSAC 1 cut(s) 1018
OliI CACNNNNGTG 1 cut(s) 657
PceI AGGCCT 1 cut(s) 1083
PdmI GAANNNNTTC 2 cut(s) 446, 1191
PfeI GAWTC 5 cut(s) 179, 257, 463, 623, 957
PflMI CCANNNNNTGG 1 cut(s) 545
PinAI ACCGGT 1 cut(s) 582
PkrI GCNGC 3 cut(s) 237, 240, 997
PleI GAGTC 2 cut(s) 736, 904
PpsI GAGTC 2 cut(s) 736, 904
Psp6I CCWGG 1 cut(s) 597
PspGI CCWGG 1 cut(s) 597
PspPI GGNCC 1 cut(s) 580
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 3 cut(s) 291, 988, 1036
RsaNI GTAC 3 cut(s) 290, 987, 1035
RseI CAYNNNNRTG 1 cut(s) 657
SaqAI TTAA 3 cut(s) 30, 938, 1076
SatI GCNGC 3 cut(s) 236, 239, 996
Sau3AI GATC 5 cut(s) 210, 267, 400, 661, 1216
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 2 cut(s) 736, 905
ScrFI CCNGG 2 cut(s) 599, 945
SduI GDGCHC 1 cut(s) 1054
SexAI ACCWGGT 1 cut(s) 597
SfaNI GCATC 5 cut(s) 517, 671, 745, 1037, 1230
SfcI CTRYAG 1 cut(s) 970
SinI GGWCC 1 cut(s) 580
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 3 cut(s) 847, 1075, 1111
SmoI CTYRAG 3 cut(s) 847, 1075, 1111
Sse9I AATT 9 cut(s) 165, 318, 349, 511, 543, 775, 1104, 1182, 1196
SseBI AGGCCT 1 cut(s) 1083
SsiI CCGC 1 cut(s) 819
SspMI CTAG 3 cut(s) 497, 750, 965
StuI AGGCCT 1 cut(s) 1083
StyD4I CCNGG 2 cut(s) 597, 943
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 4 cut(s) 85, 429, 608, 656
TasI AATT 9 cut(s) 165, 318, 349, 511, 543, 775, 1104, 1182, 1196
TatI WGTACW 1 cut(s) 1034
TfiI GAWTC 5 cut(s) 179, 257, 463, 623, 957
Tru1I TTAA 3 cut(s) 30, 938, 1076
Tru9I TTAA 3 cut(s) 30, 938, 1076
TscAI CASTG 3 cut(s) 189, 403, 613
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 3 cut(s) 235, 238, 995
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 5 cut(s) 79, 261, 402, 939, 1295
TspRI CASTG 3 cut(s) 189, 403, 613
Van91I CCANNNNNTGG 1 cut(s) 545
Vha464I CTTAAG 1 cut(s) 1075
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 2 cut(s) 349, 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XmnI GAANNNNTTC 2 cut(s) 446, 1191
XspI CTAG 3 cut(s) 497, 750, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.