Rh2BG592600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016377
Physical Location & Seq
Reverse (-)
80959643 .. 80961436
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG592600.1

Sequence Viewer

Length: 1611 bp
ATGCTGAGGTATAACTTAGGGTTCAAGCAAACTGACTATAAAGTATGGTACAGACCTAGAGAAGATAAAAAATGCAATAGAAAAGTCAGAGACCCTAACTTCACTGATCTTCAAGTTGAGAGCTCCAAGACCGAGTCAACGTTCAAATGGTTGTCATTTTTCAAAGAAGTTCAAGAAAGAAAGATAACAACCATCTTAGAAATGCAGAAGGAAGGCGCCTCCAAACCGTTCAAATGCCTTCTTTCCACAATGTTATGTGCTATTCTCCTTGTCAGCCCCCTTACAGTTTTCATTTTCGGCTTCAATAGTTCGTATCCACAGTGCATCTTTGCTACTAACTCCAACATCTCTCTCTCCCATGGCCTAATTACTTTACCTGATTCGCTGCGTAGCGAAATCTCTCATTTGCAGATCAAACTGGGTTTTTTACTGGAGCAGCTGCATGATGAAACTTCAGAATCAAAAGTGATCGCAAAGTTTTCAGAGCAGGTACTTTACATTGCCATTTCTTTGGACAAAATTGCTGTTAGCTTATCAGAGAGCAGTAAGAATTCTCCCTCTGCTAATAATGAGGTAAGCAATGTGGATGAAGATTTCAGTGATCCCGAAGAAGGTGAAGCCGAAGAACAGTTTATGAGTGGGAATGTCTTCAAATCAGGTGAGATTCGTAGCTACATTTCACCAAAACCAAACAGGCTAGTTGGGAAGAAAAATTTTCTTGGGGTGGATGCACTAACTCCATCAATTGGGTTGGCTTGTGCCAAAATGGCCTCCATCTTGGACCGGTTTATGAGTTACAAAGTTCACAGTGCGTGTCCAGATGATTCGCAAATAGCTCAGAAGCTTATAGTTCACGGTTGTGATCCATTGCCAAGAAGAAGATGCTTCACAAAATCACCTCCACACTACACTAAGCCATTTCCTATAAACGACTCCCTTTGGACTCAACCTAGTGATGCCAACATCTTATGGAACAATTACAAGTGCAAAGACTACTCTTGCCTTGTTTCTAAAGAAACCGCAGACAGAAGAGGGTTCTTCAAATGCTCAAGCTGTTTCAACATTTCACAACGTGGGTGGAATGTTCCTACGAACGAGTCTGTATCAGCAGAGTTCACCATTGATGAAGTCCTTAGCTTAAAGCCGGGGGAGATAAGAATCGGCCTAGACTATAGCCCTACAACTGGTACTTTTGCTGCTGTGATGAGGGAAAAAAATGTCACCATTGCATCAAGTACACTAAACTTAGGTGCTCCTTTCAATGAGGTCATAGCCTTAAGAGGCCTTCTTCCTCTTTACACATCAATTGGCTCAAGATTGCCTTTCTTTGACAATACCCTTGACATTATCCATTCCACTTTGTTCTTGGATGGCTGGATAGGAATTGAACTCCTTCAATTTGTTCTGTTTGATTGGGATCGCGTCCTTCGGCCAAAAGGTCTTCTTTGGATAGACAGGTTCTTCTGTCATAAAGAGGATATGAAGCTGTATTTGGAGGAGTTTAACAGGTTAGGCTACAAGCCACTGCTATGGAGGGTAATACCCAAGAATGATAAGCTTGGAGATGAGCTGTTCTTCTCAGCTGTATTGGAGAAGCCAATTAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

536

Amino Acids

60.97

Weight (kDa)

7.48

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46550
malus_domestica MD17G1063800.v1.1
prunus_persica Prupe.3G250700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0165191
rosa_laevigata RLG00000021515
rosa_multiflora Rmu_sc0001097.1_g000045 Rmu_sc0012583.1_g000003
rosa_roxburghii Rroxscaffold_2G00085950
rosa_rugosa Rorug02G0513000
rosa_samantha Rh2AG581300 Rh2BG592600 Rh2CG563300 Rh2DG602600
rosa_wichuraiana Rw0G008410 Rw2G048280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 746
AccII CGCG 1 cut(s) 1422
AciI CCGC 1 cut(s) 1020
AclI AACGTT 1 cut(s) 140
AclWI GGATC 3 cut(s) 596, 857, 1425
AcoI YGGCCR 1 cut(s) 1430
AcsI RAATTY 2 cut(s) 550, 712
AcuI CTGAAG 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 216
AdeI CACNNNGTG 1 cut(s) 1073
AfaI GTAC 4 cut(s) 50, 492, 1189, 1237
AfiI CCNNNNNNNGG 4 cut(s) 611, 746, 1184, 1604
AflII CTTAAG 1 cut(s) 1276
AgeI ACCGGT 1 cut(s) 783
AjuI GAANNNNNNNTTGG 2 cut(s) 1475, 1507
AleI CACNNNNGTG 1 cut(s) 858
Alw21I GWGCWC 2 cut(s) 125, 1255
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 3 cut(s) 596, 857, 1425
AoxI GGCC 5 cut(s) 361, 768, 1162, 1282, 1430
ApeKI GCWGC 4 cut(s) 385, 436, 439, 1196
ApoI RAATTY 2 cut(s) 550, 712
AsiGI ACCGGT 1 cut(s) 783
Asp700I GAANNNNTTC 2 cut(s) 647, 1392
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 781
AsuC2I CCSGG 1 cut(s) 1146
AsuHPI GGTGA 6 cut(s) 626, 671, 672, 888, 1108, 1213
AvaII GGWCC 1 cut(s) 781
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 640, 1433
Bbv12I GWGCWC 2 cut(s) 125, 1255
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 4 cut(s) 372, 426, 448, 1183
BccI CCATC 4 cut(s) 200, 748, 782, 1364
BciVI GTATCC 1 cut(s) 324
BcnI CCSGG 1 cut(s) 1146
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 4 cut(s) 57, 698, 951, 1166
BfmI CTRYAG 1 cut(s) 1171
BfoI RGCGCY 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 1276
BfuAI ACCTGC 1 cut(s) 478
BfuI GTATCC 1 cut(s) 324
BglI GCCNNNNNGGC 1 cut(s) 767
BisI GCNGC 4 cut(s) 386, 437, 440, 1197
BlsI GCNGC 4 cut(s) 387, 438, 441, 1198
Bme1390I CCNGG 1 cut(s) 1146
Bme18I GGWCC 1 cut(s) 781
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 1146
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 5 cut(s) 333, 718, 872, 946, 1238
BmuI ACTGGG 1 cut(s) 428
BpiI GAAGAC 2 cut(s) 640, 1433
BpmI CTGGAG 1 cut(s) 452
Bpu10I CCTNAGC 2 cut(s) 5, 1133
BpuEI CTTGAG 2 cut(s) 1033, 1297
BpuMI CCSGG 1 cut(s) 1146
BsaBI GATNNNNATC 2 cut(s) 1157, 1416
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 358, 1145
BsaWI WCCGGW 1 cut(s) 783
Bsc4I CCNNNNNNNGG 4 cut(s) 611, 746, 1184, 1604
Bse118I RCCGGY 1 cut(s) 783
Bse1I ACTGG 3 cut(s) 423, 435, 1189
Bse3DI GCAATG 4 cut(s) 498, 586, 866, 1224
Bse8I GATNNNNATC 2 cut(s) 1157, 1416
BseDI CCNNGG 2 cut(s) 358, 1145
BseGI GGATG 3 cut(s) 592, 733, 1375
BseJI GATNNNNATC 2 cut(s) 1157, 1416
BseLI CCNNNNNNNGG 4 cut(s) 611, 746, 1184, 1604
BseMI GCAATG 4 cut(s) 498, 586, 866, 1224
BseMII CTCAG 2 cut(s) 851, 1593
BseNI ACTGG 3 cut(s) 423, 435, 1189
BseRI GAGGAG 1 cut(s) 1511
BseXI GCAGC 4 cut(s) 372, 426, 448, 1183
Bsh1236I CGCG 1 cut(s) 1422
BshFI GGCC 5 cut(s) 363, 770, 1164, 1284, 1432
BshNI GGYRCC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 783
BsiHKAI GWGCWC 2 cut(s) 125, 1255
BsiSI CCGG 2 cut(s) 784, 1145
BslI CCNNNNNNNGG 4 cut(s) 611, 746, 1184, 1604
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 5 cut(s) 363, 770, 1164, 1284, 1432
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 125, 1255
Bsp143I GATC 6 cut(s) 106, 411, 468, 601, 862, 1417
Bsp19I CCATGG 1 cut(s) 358
BspACI CCGC 1 cut(s) 1020
BspANI GGCC 5 cut(s) 363, 770, 1164, 1284, 1432
BspCNI CTCAG 2 cut(s) 850, 1592
BspFNI CGCG 1 cut(s) 1422
BspLI GGNNCC 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 3 cut(s) 596, 857, 1425
BspT107I GGYRCC 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 1276
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 4 cut(s) 498, 586, 866, 1224
BsrFI RCCGGY 1 cut(s) 783
BsrI ACTGG 3 cut(s) 423, 435, 1189
BssAI RCCGGY 1 cut(s) 783
BssECI CCNNGG 2 cut(s) 358, 1145
BssMI GATC 6 cut(s) 106, 411, 468, 601, 862, 1417
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 6 cut(s) 228, 286, 321, 630, 809, 857
Bst6I CTCTTC 1 cut(s) 1024
BstACI GRCGYC 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 1276
BstDEI CTNAG 8 cut(s) 5, 16, 196, 837, 912, 1133, 1246, 1579
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 3 cut(s) 592, 733, 1375
BstFNI CGCG 1 cut(s) 1422
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 6 cut(s) 109, 414, 471, 604, 865, 1420
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 6 cut(s) 106, 411, 468, 601, 862, 1417
BstMWI GCNNNNNNNGC 1 cut(s) 767
BstSCI CCNGG 1 cut(s) 1144
BstSFI CTRYAG 1 cut(s) 1171
BstUI CGCG 1 cut(s) 1422
BstV1I GCAGC 4 cut(s) 372, 426, 448, 1183
BstV2I GAAGAC 2 cut(s) 640, 1433
BstXI CCANNNNNNTGG 2 cut(s) 511, 1530
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 5 cut(s) 363, 770, 1164, 1284, 1432
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 3 cut(s) 592, 733, 1375
BtsI GCAGTG 1 cut(s) 1523
BtsIMutI CAGTG 5 cut(s) 102, 326, 604, 814, 1523
BveI ACCTGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 783
Cfr13I GGNCC 1 cut(s) 781
CseI GACGC 1 cut(s) 1411
Csp6I GTAC 4 cut(s) 49, 491, 1188, 1236
CspAI ACCGGT 1 cut(s) 783
CspCI CAANNNNNGTGG 2 cut(s) 1058, 1093
CviAII CATG 2 cut(s) 359, 443
CviQI GTAC 4 cut(s) 49, 491, 1188, 1236
DdeI CTNAG 8 cut(s) 5, 16, 196, 837, 912, 1133, 1246, 1579
DinI GGCGCC 1 cut(s) 217
DpnI GATC 6 cut(s) 108, 413, 470, 603, 864, 1419
DpnII GATC 6 cut(s) 106, 411, 468, 601, 862, 1417
DraIII CACNNNGTG 1 cut(s) 1073
EaeI YGGCCR 1 cut(s) 1430
Eam1104I CTCTTC 1 cut(s) 1024
EarI CTCTTC 1 cut(s) 1024
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 358
Eco147I AGGCCT 1 cut(s) 1284
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 125
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 2 cut(s) 362, 446
FalI AAGNNNNNCTT 4 cut(s) 1306, 1338, 1428, 1460
FatI CATG 2 cut(s) 358, 442
Fnu4HI GCNGC 4 cut(s) 386, 437, 440, 1197
FokI GGATG 3 cut(s) 599, 740, 1382
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 4 cut(s) 386, 437, 440, 1197
FspBI CTAG 4 cut(s) 57, 698, 951, 1166
GlaI GCGC 1 cut(s) 217
GluI GCNGC 4 cut(s) 386, 437, 440, 1197
GsuI CTGGAG 1 cut(s) 452
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 5 cut(s) 363, 770, 1164, 1284, 1432
HapII CCGG 2 cut(s) 784, 1145
HgaI GACGC 1 cut(s) 1411
HhaI GCGC 1 cut(s) 218
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 2 cut(s) 362, 446
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 2 cut(s) 842, 1556
HinfI GANTC 9 cut(s) 134, 380, 458, 664, 824, 932, 943, 1097, 1158
HpaII CCGG 2 cut(s) 784, 1145
HphI GGTGA 6 cut(s) 626, 671, 672, 888, 1108, 1213
Hpy166II GTNNAC 5 cut(s) 138, 805, 853, 1116, 1238
Hpy188I TCNGA 5 cut(s) 89, 457, 484, 538, 840
Hpy188III TCNNGA 4 cut(s) 173, 605, 818, 1314
Hpy8I GTNNAC 5 cut(s) 138, 805, 853, 1116, 1238
HpyAV CCTTC 7 cut(s) 202, 206, 248, 605, 1295, 1403, 1436
HpyCH4III ACNGT 6 cut(s) 228, 286, 321, 630, 809, 857
HpyCH4IV ACGT 2 cut(s) 140, 1072
HpyCH4V TGCA 8 cut(s) 75, 205, 324, 409, 442, 731, 987, 1229
HpyF10VI GCNNNNNNNGC 1 cut(s) 767
HpyF3I CTNAG 8 cut(s) 5, 16, 196, 837, 912, 1133, 1246, 1579
HpySE526I ACGT 2 cut(s) 140, 1072
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 362, 446
HspAI GCGC 1 cut(s) 216
KasI GGCGCC 1 cut(s) 215
Kzo9I GATC 6 cut(s) 106, 411, 468, 601, 862, 1417
LmnI GCTCC 3 cut(s) 128, 433, 1258
Lsp1109I GCAGC 4 cut(s) 372, 426, 448, 1183
LweI GCATC 5 cut(s) 333, 718, 872, 946, 1238
MaeI CTAG 4 cut(s) 57, 698, 951, 1166
MaeII ACGT 2 cut(s) 140, 1072
MaeIII GTNAC 2 cut(s) 794, 1219
MalI GATC 6 cut(s) 108, 413, 470, 603, 864, 1419
MboI GATC 6 cut(s) 106, 411, 468, 601, 862, 1417
MfeI CAATTG 2 cut(s) 744, 1305
MhlI GDGCHC 2 cut(s) 125, 1255
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 4 cut(s) 143, 926, 937, 1106
MmeI TCCRAC 1 cut(s) 366
MroXI GAANNNNTTC 2 cut(s) 647, 1392
MseI TTAA 3 cut(s) 1139, 1277, 1503
MslI CAYNNNNRTG 2 cut(s) 858, 1528
MspA1I CMGCKG 2 cut(s) 439, 1583
MspCI CTTAAG 1 cut(s) 1276
MspI CCGG 2 cut(s) 784, 1145
MspR9I CCNGG 1 cut(s) 1146
MunI CAATTG 2 cut(s) 744, 1305
MvnI CGCG 1 cut(s) 1422
MwoI GCNNNNNNNGC 1 cut(s) 767
NarI GGCGCC 1 cut(s) 216
NciI CCSGG 1 cut(s) 1146
NcoI CCATGG 1 cut(s) 358
NdeII GATC 6 cut(s) 106, 411, 468, 601, 862, 1417
NlaIII CATG 2 cut(s) 362, 446
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 1219
OliI CACNNNNGTG 1 cut(s) 858
PceI AGGCCT 1 cut(s) 1284
PdmI GAANNNNTTC 2 cut(s) 647, 1392
PfeI GAWTC 5 cut(s) 380, 458, 664, 824, 1158
PflFI GACNNNGTC 1 cut(s) 133
PflMI CCANNNNNTGG 1 cut(s) 746
PinAI ACCGGT 1 cut(s) 783
PkrI GCNGC 4 cut(s) 387, 438, 441, 1198
PleI GAGTC 4 cut(s) 142, 926, 937, 1105
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 4 cut(s) 142, 926, 937, 1105
Psp124BI GAGCTC 1 cut(s) 125
Psp1406I AACGTT 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 781
PsyI GACNNNGTC 1 cut(s) 133
PvuII CAGCTG 2 cut(s) 439, 1583
RsaI GTAC 4 cut(s) 50, 492, 1189, 1237
RsaNI GTAC 4 cut(s) 49, 491, 1188, 1236
RseI CAYNNNNRTG 2 cut(s) 858, 1528
SacI GAGCTC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 1139, 1277, 1503
SatI GCNGC 4 cut(s) 386, 437, 440, 1197
Sau3AI GATC 6 cut(s) 106, 411, 468, 601, 862, 1417
Sau96I GGNCC 1 cut(s) 781
SchI GAGTC 4 cut(s) 143, 926, 937, 1106
ScrFI CCNGG 1 cut(s) 1146
SduI GDGCHC 2 cut(s) 125, 1255
SfaNI GCATC 5 cut(s) 333, 718, 872, 946, 1238
SfcI CTRYAG 1 cut(s) 1171
SfoI GGCGCC 1 cut(s) 217
SinI GGWCC 1 cut(s) 781
SmiMI CAYNNNNRTG 2 cut(s) 858, 1528
SmlI CTYRAG 3 cut(s) 1048, 1276, 1312
SmoI CTYRAG 3 cut(s) 1048, 1276, 1312
SseBI AGGCCT 1 cut(s) 1284
SsiI CCGC 1 cut(s) 1020
SspDI GGCGCC 1 cut(s) 215
SspMI CTAG 4 cut(s) 57, 698, 951, 1166
SstI GAGCTC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 1284
StyD4I CCNGG 1 cut(s) 1144
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 6 cut(s) 228, 286, 321, 630, 809, 857
TaiI ACGT 2 cut(s) 143, 1075
TaqII GACCGA 1 cut(s) 146
TatI WGTACW 1 cut(s) 1235
TfiI GAWTC 5 cut(s) 380, 458, 664, 824, 1158
Tru1I TTAA 3 cut(s) 1139, 1277, 1503
Tru9I TTAA 3 cut(s) 1139, 1277, 1503
TscAI CASTG 5 cut(s) 109, 326, 604, 814, 1530
TseFI GTSAC 1 cut(s) 1219
TseI GCWGC 4 cut(s) 385, 436, 439, 1196
Tsp45I GTSAC 1 cut(s) 1219
TspDTI ATGAA 5 cut(s) 280, 462, 603, 1140, 1496
TspRI CASTG 5 cut(s) 109, 326, 604, 814, 1530
Tth111I GACNNNGTC 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 1276
VpaK11BI GGWCC 1 cut(s) 781
XapI RAATTY 2 cut(s) 550, 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 1363
XmnI GAANNNNTTC 2 cut(s) 647, 1392
XspI CTAG 4 cut(s) 57, 698, 951, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.