Rroxscaffold_2G00085950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016377
Physical Location & Seq
Forward (+)
8249950 .. 8251410
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085950.1

Sequence Viewer

Length: 1461 bp
ATGGTAGTCAGTTTTCAGAGAAATTCAAGAAAGATAACAACGATCTTAGAAATGCAGAAGGAAAGCGCCTCTAAGCCGTTTAAATGCCTTCTTTCCACAATGTTATGTGCTATTCTCCTTGTCAGCCCTCTTACAGTTTTCATTTTCGGCTTCAATAGTTCGTATCAACCATCCATCTTTGCTACTAATTCCAACATCTCTCTCTCCCATGGCCTAATTGCTTTACCTGATTCACTGCGTAGCGAAATCTCTCATTTGCAGGTCAAACTGGGTTTTTTACTGGAGCAGCTGCATAATGAAACTTCAGAATCAAAAGTGATCACAAAGTTTTCAGAGCAGGTACTTTACATTGCCATTTCTTTGGACAAAATTGCTGTTAGCTTATCAGAGAGCAGTATGAATTCTCCCTCTGCTAATGATGAGTTAAGCAATGTGGATGAAGATTTCAGTGATCCCGAAGAAGGTGAAGCCGAAGAACAGTTTATGAGTGGGAATGTCTTCAAATCAGGTGAGATTCGTAGTTACATTTCACCAAAACCAAACAGGCTAGTTGGGAAGAAAAATTTTCTTGGGGTGGATGCACTGACTCCGTCAATTGGGTTGGCTTGTGCCAAAATGGCCTCCAACTTGGACCGGTTTATGAGTTACAAGGTTCACAGTGCGTGTCCAGATGATTCGCAAATAGCTCAGAAGCTTATAGTTCACGGTTGTGATCCATTGCCAAGAAGAAGATGCTTCACAAAATCACCTCCACACTACACTAAGCCATTTCCTATAAACGCCTCCCTTTGGACTCAACCTAGTGATGCCAACATCTTATGGAACAATTACAAGTGCAAAGACTACTCTTGCCTTGTTTCTAAAGAAACCGCAGACAGAAGAGGGTTCTTCAAATGCTCAAGCTGTTTCAACATTTCACAACGTGGGTGGAATGTTCCTACGAATGAGTCTGTATCAGCAGAGTTCACCATTGATGAAGTCCTTAGCTTAAAGCCGGGGGAGATAAGAATCGGCCTAGACTATAGCCCTACAACTGGTACTTTTGCTGCTGTGATGAAGGAAAAAAATGTCACCATTGCATCAAGTGCACTAAACTTAGGTGCTCCTTTCAGTGAGGTCATAGCCTTAAGAGGCCTTCTTCCACTTTACACATCAATTGGCTCAAGATTGCCTTTCTTTGACAATACCCTTGACATTATCCATTCCACTTTGTTCTTGGATGGTTGGATAGGAATTGAACTTCTTCAATTTGTTCTGTTTGATTGGGATCGCGTCCTTCGGCCAAAGGGTCTTCTTTGGATAGACAGGTTCTTCTGTCATAAAGAGGATATGAAGCTGTATTTGGAGGAGTTTAACAGGTTAGGCTACAAGCCACTACTATGGAGGGTGGTACCCAAGAATGATAAGCTTGGAGATGAGCTCTTCTTCTCAGCTGTATTGGAGAAGCCAATTAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

486

Amino Acids

54.57

Weight (kDa)

6.48

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46550
malus_domestica MD17G1063800.v1.1
prunus_persica Prupe.3G250700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0165191
rosa_laevigata RLG00000021515
rosa_multiflora Rmu_sc0001097.1_g000045 Rmu_sc0012583.1_g000003
rosa_roxburghii Rroxscaffold_2G00085950
rosa_rugosa Rorug02G0513000
rosa_samantha Rh2AG581300 Rh2BG592600 Rh2CG563300 Rh2DG602600
rosa_wichuraiana Rw0G008410 Rw2G048280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 250, 328
Acc65I GGTACC 1 cut(s) 1390
AccB1I GGYRCC 1 cut(s) 1390
AccII CGCG 1 cut(s) 1272
AciI CCGC 1 cut(s) 870
AclWI GGATC 3 cut(s) 446, 707, 1275
AcoI YGGCCR 1 cut(s) 1280
AcsI RAATTY 3 cut(s) 22, 400, 562
AcuI CTGAAG 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 923
AfaI GTAC 3 cut(s) 342, 1039, 1392
AfiI CCNNNNNNNGG 5 cut(s) 461, 596, 789, 1034, 1454
AflII CTTAAG 1 cut(s) 1126
AgeI ACCGGT 1 cut(s) 633
AgsI TTSAA 7 cut(s) 27, 154, 502, 892, 910, 1238, 1247
AjuI GAANNNNNNNTTGG 2 cut(s) 1325, 1357
AleI CACNNNNGTG 1 cut(s) 708
Alw21I GWGCWC 3 cut(s) 1090, 1105, 1422
Alw44I GTGCAC 1 cut(s) 1086
AlwI GGATC 3 cut(s) 446, 707, 1275
AoxI GGCC 5 cut(s) 211, 618, 1012, 1132, 1280
ApaLI GTGCAC 1 cut(s) 1086
ApeKI GCWGC 3 cut(s) 286, 289, 1046
ApoI RAATTY 3 cut(s) 22, 400, 562
AsiGI ACCGGT 1 cut(s) 633
Asp700I GAANNNNTTC 2 cut(s) 497, 1242
Asp718I GGTACC 1 cut(s) 1390
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 631
AsuC2I CCSGG 1 cut(s) 996
AsuHPI GGTGA 6 cut(s) 476, 521, 522, 738, 958, 1063
AvaII GGWCC 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 1090
BanI GGYRCC 1 cut(s) 1390
BanII GRGCYC 1 cut(s) 1422
BbsI GAAGAC 2 cut(s) 490, 1283
Bbv12I GWGCWC 3 cut(s) 1090, 1105, 1422
BbvI GCAGC 3 cut(s) 276, 298, 1033
BccI CCATC 3 cut(s) 178, 182, 1214
BceAI ACGGC 1 cut(s) 61
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 1 cut(s) 996
BfaI CTAG 3 cut(s) 548, 801, 1016
BfmI CTRYAG 1 cut(s) 1021
BfoI RGCGCY 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 1126
BfuAI ACCTGC 2 cut(s) 250, 328
BglI GCCNNNNNGGC 1 cut(s) 617
BisI GCNGC 3 cut(s) 287, 290, 1047
BlsI GCNGC 3 cut(s) 288, 291, 1048
Bme1390I CCNGG 1 cut(s) 996
Bme18I GGWCC 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 1 cut(s) 1392
BmrFI CCNGG 1 cut(s) 996
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 4 cut(s) 568, 722, 796, 1088
BmuI ACTGGG 1 cut(s) 278
BpiI GAAGAC 2 cut(s) 490, 1283
BplI GAGNNNNNCTC 2 cut(s) 1404, 1436
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 983
BpuEI CTTGAG 2 cut(s) 883, 1147
BpuMI CCSGG 1 cut(s) 996
BsaBI GATNNNNATC 2 cut(s) 1007, 1266
BsaJI CCNNGG 2 cut(s) 208, 995
BsaWI WCCGGW 1 cut(s) 633
Bsc4I CCNNNNNNNGG 5 cut(s) 461, 596, 789, 1034, 1454
Bse118I RCCGGY 1 cut(s) 633
Bse1I ACTGG 3 cut(s) 273, 285, 1039
Bse3DI GCAATG 4 cut(s) 348, 436, 716, 1074
Bse8I GATNNNNATC 2 cut(s) 1007, 1266
BseDI CCNNGG 2 cut(s) 208, 995
BseGI GGATG 4 cut(s) 170, 442, 583, 1225
BseJI GATNNNNATC 2 cut(s) 1007, 1266
BseLI CCNNNNNNNGG 5 cut(s) 461, 596, 789, 1034, 1454
BseMI GCAATG 4 cut(s) 348, 436, 716, 1074
BseMII CTCAG 2 cut(s) 701, 1443
BseNI ACTGG 3 cut(s) 273, 285, 1039
BseRI GAGGAG 1 cut(s) 1361
BseSI GKGCMC 1 cut(s) 1090
BseXI GCAGC 3 cut(s) 276, 298, 1033
Bsh1236I CGCG 1 cut(s) 1272
BshFI GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
BshNI GGYRCC 1 cut(s) 1390
BshTI ACCGGT 1 cut(s) 633
BsiHKAI GWGCWC 3 cut(s) 1090, 1105, 1422
BsiSI CCGG 2 cut(s) 634, 995
BslI CCNNNNNNNGG 5 cut(s) 461, 596, 789, 1034, 1454
BsnI GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
Bsp1286I GDGCHC 3 cut(s) 1090, 1105, 1422
Bsp143I GATC 5 cut(s) 42, 318, 451, 712, 1267
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 1 cut(s) 870
BspANI GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
BspCNI CTCAG 2 cut(s) 700, 1442
BspFNI CGCG 1 cut(s) 1272
BspLI GGNNCC 1 cut(s) 1392
BspMI ACCTGC 2 cut(s) 250, 328
BspPI GGATC 3 cut(s) 446, 707, 1275
BspQI GCTCTTC 1 cut(s) 1427
BspT107I GGYRCC 1 cut(s) 1390
BspTI CTTAAG 1 cut(s) 1126
BsrDI GCAATG 4 cut(s) 348, 436, 716, 1074
BsrFI RCCGGY 1 cut(s) 633
BsrI ACTGG 3 cut(s) 273, 285, 1039
BssAI RCCGGY 1 cut(s) 633
BssECI CCNNGG 2 cut(s) 208, 995
BssMI GATC 5 cut(s) 42, 318, 451, 712, 1267
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 4 cut(s) 136, 480, 659, 707
Bst6I CTCTTC 2 cut(s) 874, 1427
BstAFI CTTAAG 1 cut(s) 1126
BstAPI GCANNNNNTGC 1 cut(s) 1085
BstDEI CTNAG 7 cut(s) 46, 72, 687, 762, 983, 1096, 1429
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 4 cut(s) 170, 442, 583, 1225
BstFNI CGCG 1 cut(s) 1272
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 5 cut(s) 45, 321, 454, 715, 1270
BstMBI GATC 5 cut(s) 42, 318, 451, 712, 1267
BstMWI GCNNNNNNNGC 2 cut(s) 617, 1085
BstSCI CCNGG 1 cut(s) 994
BstSFI CTRYAG 1 cut(s) 1021
BstSLI GKGCMC 1 cut(s) 1090
BstUI CGCG 1 cut(s) 1272
BstV1I GCAGC 3 cut(s) 276, 298, 1033
BstV2I GAAGAC 2 cut(s) 490, 1283
BstXI CCANNNNNNTGG 2 cut(s) 361, 1380
BsuRI GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 4 cut(s) 170, 442, 583, 1225
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 5 cut(s) 233, 454, 581, 664, 1117
BveI ACCTGC 2 cut(s) 250, 328
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 631
CseI GACGC 1 cut(s) 1261
Csp6I GTAC 3 cut(s) 341, 1038, 1391
CspAI ACCGGT 1 cut(s) 633
CspCI CAANNNNNGTGG 2 cut(s) 908, 943
CviAII CATG 1 cut(s) 209
CviQI GTAC 3 cut(s) 341, 1038, 1391
DdeI CTNAG 7 cut(s) 46, 72, 687, 762, 983, 1096, 1429
DpnI GATC 5 cut(s) 44, 320, 453, 714, 1269
DpnII GATC 5 cut(s) 42, 318, 451, 712, 1267
DraI TTTAAA 1 cut(s) 82
DraIII CACNNNGTG 1 cut(s) 923
EaeI YGGCCR 1 cut(s) 1280
Eam1104I CTCTTC 2 cut(s) 874, 1427
EarI CTCTTC 2 cut(s) 874, 1427
Ecl136II GAGCTC 1 cut(s) 1420
Eco130I CCWWGG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 1134
Eco24I GRGCYC 1 cut(s) 1422
Eco47I GGWCC 1 cut(s) 631
Eco53kI GAGCTC 1 cut(s) 1420
Eco57I CTGAAG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 1420
EcoRI GAATTC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 1422
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 212
FalI AAGNNNNNCTT 2 cut(s) 1156, 1188
FatI CATG 1 cut(s) 208
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 287, 290, 1047
FokI GGATG 4 cut(s) 157, 449, 590, 1232
FriOI GRGCYC 1 cut(s) 1422
Fsp4HI GCNGC 3 cut(s) 287, 290, 1047
FspBI CTAG 3 cut(s) 548, 801, 1016
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 287, 290, 1047
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
HapII CCGG 2 cut(s) 634, 995
HgaI GACGC 1 cut(s) 1261
HhaI GCGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 2 cut(s) 692, 1406
HinfI GANTC 8 cut(s) 230, 308, 514, 586, 674, 793, 947, 1008
HpaII CCGG 2 cut(s) 634, 995
HphI GGTGA 6 cut(s) 476, 521, 522, 738, 958, 1063
Hpy166II GTNNAC 4 cut(s) 655, 703, 966, 1088
Hpy188I TCNGA 5 cut(s) 18, 307, 334, 388, 690
Hpy188III TCNNGA 4 cut(s) 27, 455, 668, 1164
Hpy8I GTNNAC 4 cut(s) 655, 703, 966, 1088
HpyAV CCTTC 6 cut(s) 52, 98, 455, 1051, 1145, 1286
HpyCH4III ACNGT 4 cut(s) 136, 480, 659, 707
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 7 cut(s) 55, 259, 292, 581, 837, 1079, 1088
HpyF10VI GCNNNNNNNGC 2 cut(s) 617, 1085
HpyF3I CTNAG 7 cut(s) 46, 72, 687, 762, 983, 1096, 1429
HpySE526I ACGT 1 cut(s) 922
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 66
KpnI GGTACC 1 cut(s) 1394
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 5 cut(s) 42, 318, 451, 712, 1267
LguI GCTCTTC 1 cut(s) 1427
LmnI GCTCC 2 cut(s) 283, 1108
Lsp1109I GCAGC 3 cut(s) 276, 298, 1033
LweI GCATC 4 cut(s) 568, 722, 796, 1088
MaeI CTAG 3 cut(s) 548, 801, 1016
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 3 cut(s) 521, 644, 1069
MalI GATC 5 cut(s) 44, 320, 453, 714, 1269
MboI GATC 5 cut(s) 42, 318, 451, 712, 1267
MfeI CAATTG 2 cut(s) 594, 1155
MhlI GDGCHC 3 cut(s) 1090, 1105, 1422
MlyI GAGTC 3 cut(s) 580, 787, 956
MmeI TCCRAC 3 cut(s) 216, 648, 1205
MroXI GAANNNNTTC 2 cut(s) 497, 1242
MseI TTAA 5 cut(s) 81, 425, 989, 1127, 1353
MslI CAYNNNNRTG 2 cut(s) 708, 1378
MspA1I CMGCKG 2 cut(s) 289, 1433
MspCI CTTAAG 1 cut(s) 1126
MspI CCGG 2 cut(s) 634, 995
MspR9I CCNGG 1 cut(s) 996
MunI CAATTG 2 cut(s) 594, 1155
MvnI CGCG 1 cut(s) 1272
MwoI GCNNNNNNNGC 2 cut(s) 617, 1085
NciI CCSGG 1 cut(s) 996
NcoI CCATGG 1 cut(s) 208
NdeII GATC 5 cut(s) 42, 318, 451, 712, 1267
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 1392
NmuCI GTSAC 1 cut(s) 1069
OliI CACNNNNGTG 1 cut(s) 708
PceI AGGCCT 1 cut(s) 1134
PciSI GCTCTTC 1 cut(s) 1427
PdmI GAANNNNTTC 2 cut(s) 497, 1242
PfeI GAWTC 5 cut(s) 230, 308, 514, 674, 1008
PflFI GACNNNGTC 1 cut(s) 589
PinAI ACCGGT 1 cut(s) 633
PkrI GCNGC 3 cut(s) 288, 291, 1048
PleI GAGTC 3 cut(s) 580, 787, 955
PpsI GAGTC 3 cut(s) 580, 787, 955
Psp124BI GAGCTC 1 cut(s) 1422
PspN4I GGNNCC 1 cut(s) 1392
PspPI GGNCC 1 cut(s) 631
PsyI GACNNNGTC 1 cut(s) 589
PvuII CAGCTG 2 cut(s) 289, 1433
RsaI GTAC 3 cut(s) 342, 1039, 1392
RsaNI GTAC 3 cut(s) 341, 1038, 1391
RseI CAYNNNNRTG 2 cut(s) 708, 1378
SacI GAGCTC 1 cut(s) 1422
SapI GCTCTTC 1 cut(s) 1427
SaqAI TTAA 5 cut(s) 81, 425, 989, 1127, 1353
SatI GCNGC 3 cut(s) 287, 290, 1047
Sau3AI GATC 5 cut(s) 42, 318, 451, 712, 1267
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 3 cut(s) 580, 787, 956
ScrFI CCNGG 1 cut(s) 996
SduI GDGCHC 3 cut(s) 1090, 1105, 1422
SfaNI GCATC 4 cut(s) 568, 722, 796, 1088
SfcI CTRYAG 1 cut(s) 1021
SinI GGWCC 1 cut(s) 631
SmiMI CAYNNNNRTG 2 cut(s) 708, 1378
SmlI CTYRAG 3 cut(s) 898, 1126, 1162
SmoI CTYRAG 3 cut(s) 898, 1126, 1162
SseBI AGGCCT 1 cut(s) 1134
SsiI CCGC 1 cut(s) 870
SspMI CTAG 3 cut(s) 548, 801, 1016
SstI GAGCTC 1 cut(s) 1422
StuI AGGCCT 1 cut(s) 1134
StyD4I CCNGG 1 cut(s) 994
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 4 cut(s) 136, 480, 659, 707
TaiI ACGT 1 cut(s) 925
TfiI GAWTC 5 cut(s) 230, 308, 514, 674, 1008
Tru1I TTAA 5 cut(s) 81, 425, 989, 1127, 1353
Tru9I TTAA 5 cut(s) 81, 425, 989, 1127, 1353
TscAI CASTG 5 cut(s) 240, 454, 588, 664, 1117
TseFI GTSAC 1 cut(s) 1069
TseI GCWGC 3 cut(s) 286, 289, 1046
Tsp45I GTSAC 1 cut(s) 1069
TspDTI ATGAA 7 cut(s) 130, 312, 413, 453, 990, 1070, 1346
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 5 cut(s) 240, 454, 588, 664, 1117
Tth111I GACNNNGTC 1 cut(s) 589
Vha464I CTTAAG 1 cut(s) 1126
VneI GTGCAC 1 cut(s) 1086
VpaK11BI GGWCC 1 cut(s) 631
XapI RAATTY 3 cut(s) 22, 400, 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 1213
XmnI GAANNNNTTC 2 cut(s) 497, 1242
XspI CTAG 3 cut(s) 548, 801, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.