Rh2AG581300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016377
Physical Location & Seq
Reverse (-)
81072489 .. 81074261
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG581300.1

Sequence Viewer

Length: 1461 bp
ATGGTTGTCATTTTTCAAAGAAGTTCAAGAAAGATAACAACCATCTTAGAAATGCAGAAGGAAGGCGCCTCCAAACCGTTCAAATGCCTTCTTTCCACAATGTTATGTGCTATTCTCCTTGTCAGCCCCCTTACAGTTTTCATTTTCGGCTTCAATAGTTCGTATCCACAATGCATCTTTGCTACTAACTCCAACATCTCTCTCTCCCATGGCCTAATTGCTTTACCTGATTCGCTGCGTAGCGAAATCTCTCATTTGCAGATCAAACTGGGTTTTTTACTAGAGCAGCTGCATGATGAAACTTCAGAATCAAAAGTGATCGCAAAGTTTTCAGAGCAGGTACTTTACATTGCCATTTCTTTGGACAAAATTGCTGTTAGCTTATCAGAGAGCAGTAAGAATTCTCCCTCTGCTAATAATGAGGTAAGCAATGTGGATGAAGATTTCAGTGATCCCGAAGAAGGTGAAGCCGAAGAACAGTTTATGAGTGGGAATGTCTTCAAATCAGGTGAGATTCGTAGTTACATTTCACCAAAACCAAACAGGCTAGTTGGGAAGAAAAATTTTCTTGGAGTGGATGCACTAACTCCATCAATTGGGTTGGCTTGTGCCAAAATGGCCTCCATCTTGGACCGGTTTATGAGTTACAAGGTTCACAGTGCGTGTCCAGATGATTCGCAAATAGCTCAGAAGCTTATAGTACACGGTTGTGATCCATTGCCAAGAAGAAGATGCTTCACAAAATCACCTCCACACTACACTAAGCCATTTCCTATAAACGCCTCCCTTTGGACTCAACCTAGTGATGCCAACATCTTATGGAACAATTACAAGTGCAAAGACTACTCTTGCCTTGTTTCTAAAGAAACCGCAGACAGAAGAGGGTTCTTCAAATGCTCAAGCTGTTTCAACATTTCACAACGTGGGTGGAATGTTCCTACGAATGAGTCTGTATCAGCAGAGTTCACCATTGATGAAGTCCTTAGCTTAAAGCCGGGGGAGATAAGAATCGGCCTAGACTATAGCCCTACAACTGGTACTTTTGCTGCTGTGATGAGGGAAAAAAATGTCACCATTGCATCAAGTACACTAAACTTAGGTGCTCCTTTCAATGAGGTCATAGCCTTAAGAGGCCTTCTTCCTCTTTACACATCAATTGGCTCAAGATTGCCTTTCTTTGACAATACCCTTGACATTATCCATTCCACTTTGTTCTTGGATGGCTGGATAGGATTTGAACTCCTTCAATTTGTTCTGTTTGATTGGGATCGCGTCCTTCGGCCAAAGGGTCTTCTTTGGATAGACAGGTTCTTCTGTCATAAAGAGGATATGAAGCTGTATTTGGAGGAGTTTAACAGGTTAGGCTACAAGCCACTGCTATGGAGGGTAATACCCAAGAATGATAAGCTTGGAGATGAGCTGTTCTTCTCAGCTGTATTGGAGAAGCCAATTAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

486

Amino Acids

54.66

Weight (kDa)

6.72

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46550
malus_domestica MD17G1063800.v1.1
prunus_persica Prupe.3G250700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0165191
rosa_laevigata RLG00000021515
rosa_multiflora Rmu_sc0001097.1_g000045 Rmu_sc0012583.1_g000003
rosa_roxburghii Rroxscaffold_2G00085950
rosa_rugosa Rorug02G0513000
rosa_samantha Rh2AG581300 Rh2BG592600 Rh2CG563300 Rh2DG602600
rosa_wichuraiana Rw0G008410 Rw2G048280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 596
AccII CGCG 1 cut(s) 1272
AciI CCGC 1 cut(s) 870
AclWI GGATC 3 cut(s) 446, 707, 1275
AcoI YGGCCR 1 cut(s) 1280
AcsI RAATTY 2 cut(s) 400, 562
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 923
AfaI GTAC 4 cut(s) 342, 702, 1039, 1087
AfiI CCNNNNNNNGG 5 cut(s) 461, 596, 789, 1034, 1454
AflII CTTAAG 1 cut(s) 1126
AgeI ACCGGT 1 cut(s) 633
AjuI GAANNNNNNNTTGG 2 cut(s) 1325, 1357
AleI CACNNNNGTG 1 cut(s) 708
Alw21I GWGCWC 1 cut(s) 1105
AlwI GGATC 3 cut(s) 446, 707, 1275
AoxI GGCC 5 cut(s) 211, 618, 1012, 1132, 1280
ApeKI GCWGC 4 cut(s) 235, 286, 289, 1046
ApoI RAATTY 2 cut(s) 400, 562
AsiGI ACCGGT 1 cut(s) 633
Asp700I GAANNNNTTC 2 cut(s) 497, 1242
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 631
AsuC2I CCSGG 1 cut(s) 996
AsuHPI GGTGA 6 cut(s) 476, 521, 522, 738, 958, 1063
AvaII GGWCC 1 cut(s) 631
BanI GGYRCC 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 490, 1283
Bbv12I GWGCWC 1 cut(s) 1105
BbvI GCAGC 4 cut(s) 222, 276, 298, 1033
BccI CCATC 4 cut(s) 50, 598, 632, 1214
BciVI GTATCC 1 cut(s) 174
BcnI CCSGG 1 cut(s) 996
BfaI CTAG 4 cut(s) 281, 548, 801, 1016
BfmI CTRYAG 1 cut(s) 1021
BfoI RGCGCY 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 1126
BfuAI ACCTGC 1 cut(s) 328
BfuI GTATCC 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 617
BisI GCNGC 4 cut(s) 236, 287, 290, 1047
BlsI GCNGC 4 cut(s) 237, 288, 291, 1048
Bme1390I CCNGG 1 cut(s) 996
Bme18I GGWCC 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 996
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 5 cut(s) 183, 568, 722, 796, 1088
BmuI ACTGGG 1 cut(s) 278
BpiI GAAGAC 2 cut(s) 490, 1283
Bpu10I CCTNAGC 1 cut(s) 983
BpuEI CTTGAG 2 cut(s) 883, 1147
BpuMI CCSGG 1 cut(s) 996
BsaBI GATNNNNATC 2 cut(s) 1007, 1266
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 208, 995
BsaWI WCCGGW 1 cut(s) 633
Bsc4I CCNNNNNNNGG 5 cut(s) 461, 596, 789, 1034, 1454
Bse118I RCCGGY 1 cut(s) 633
Bse1I ACTGG 2 cut(s) 273, 1039
Bse3DI GCAATG 4 cut(s) 348, 436, 716, 1074
Bse8I GATNNNNATC 2 cut(s) 1007, 1266
BseDI CCNNGG 2 cut(s) 208, 995
BseGI GGATG 3 cut(s) 442, 583, 1225
BseJI GATNNNNATC 2 cut(s) 1007, 1266
BseLI CCNNNNNNNGG 5 cut(s) 461, 596, 789, 1034, 1454
BseMI GCAATG 4 cut(s) 348, 436, 716, 1074
BseMII CTCAG 2 cut(s) 701, 1443
BseNI ACTGG 2 cut(s) 273, 1039
BseRI GAGGAG 1 cut(s) 1361
BseXI GCAGC 4 cut(s) 222, 276, 298, 1033
Bsh1236I CGCG 1 cut(s) 1272
BshFI GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 633
BsiHKAI GWGCWC 1 cut(s) 1105
BsiSI CCGG 2 cut(s) 634, 995
BslI CCNNNNNNNGG 5 cut(s) 461, 596, 789, 1034, 1454
BsnI GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
Bsp1286I GDGCHC 1 cut(s) 1105
Bsp143I GATC 5 cut(s) 261, 318, 451, 712, 1267
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 1 cut(s) 870
BspANI GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
BspCNI CTCAG 2 cut(s) 700, 1442
BspFNI CGCG 1 cut(s) 1272
BspLI GGNNCC 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 3 cut(s) 446, 707, 1275
BspT107I GGYRCC 1 cut(s) 65
BspTI CTTAAG 1 cut(s) 1126
BsrDI GCAATG 4 cut(s) 348, 436, 716, 1074
BsrFI RCCGGY 1 cut(s) 633
BsrI ACTGG 2 cut(s) 273, 1039
BssAI RCCGGY 1 cut(s) 633
BssECI CCNNGG 2 cut(s) 208, 995
BssMI GATC 5 cut(s) 261, 318, 451, 712, 1267
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 5 cut(s) 78, 136, 480, 659, 707
Bst6I CTCTTC 1 cut(s) 874
BstACI GRCGYC 1 cut(s) 66
BstAFI CTTAAG 1 cut(s) 1126
BstDEI CTNAG 6 cut(s) 46, 687, 762, 983, 1096, 1429
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 3 cut(s) 442, 583, 1225
BstFNI CGCG 1 cut(s) 1272
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 5 cut(s) 264, 321, 454, 715, 1270
BstMBI GATC 5 cut(s) 261, 318, 451, 712, 1267
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 994
BstSFI CTRYAG 1 cut(s) 1021
BstUI CGCG 1 cut(s) 1272
BstV1I GCAGC 4 cut(s) 222, 276, 298, 1033
BstV2I GAAGAC 2 cut(s) 490, 1283
BstXI CCANNNNNNTGG 2 cut(s) 361, 1380
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 3 cut(s) 442, 583, 1225
BtsI GCAGTG 1 cut(s) 1373
BtsIMutI CAGTG 3 cut(s) 454, 664, 1373
BveI ACCTGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 631
CseI GACGC 1 cut(s) 1261
Csp6I GTAC 4 cut(s) 341, 701, 1038, 1086
CspAI ACCGGT 1 cut(s) 633
CspCI CAANNNNNGTGG 2 cut(s) 908, 943
CviAII CATG 2 cut(s) 209, 293
CviQI GTAC 4 cut(s) 341, 701, 1038, 1086
DdeI CTNAG 6 cut(s) 46, 687, 762, 983, 1096, 1429
DinI GGCGCC 1 cut(s) 67
DpnI GATC 5 cut(s) 263, 320, 453, 714, 1269
DpnII GATC 5 cut(s) 261, 318, 451, 712, 1267
DraIII CACNNNGTG 1 cut(s) 923
EaeI YGGCCR 1 cut(s) 1280
Eam1104I CTCTTC 1 cut(s) 874
EarI CTCTTC 1 cut(s) 874
Eco130I CCWWGG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 1134
Eco47I GGWCC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 2 cut(s) 212, 296
FalI AAGNNNNNCTT 2 cut(s) 1156, 1188
FatI CATG 2 cut(s) 208, 292
Fnu4HI GCNGC 4 cut(s) 236, 287, 290, 1047
FokI GGATG 3 cut(s) 449, 590, 1232
Fsp4HI GCNGC 4 cut(s) 236, 287, 290, 1047
FspBI CTAG 4 cut(s) 281, 548, 801, 1016
GlaI GCGC 1 cut(s) 67
GluI GCNGC 4 cut(s) 236, 287, 290, 1047
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 5 cut(s) 213, 620, 1014, 1134, 1282
HapII CCGG 2 cut(s) 634, 995
HgaI GACGC 1 cut(s) 1261
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 212, 296
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 2 cut(s) 692, 1406
HinfI GANTC 7 cut(s) 230, 308, 514, 674, 793, 947, 1008
HpaII CCGG 2 cut(s) 634, 995
HphI GGTGA 6 cut(s) 476, 521, 522, 738, 958, 1063
Hpy166II GTNNAC 4 cut(s) 655, 703, 966, 1088
Hpy188I TCNGA 4 cut(s) 307, 334, 388, 690
Hpy188III TCNNGA 4 cut(s) 27, 455, 668, 1164
Hpy8I GTNNAC 4 cut(s) 655, 703, 966, 1088
HpyAV CCTTC 7 cut(s) 52, 56, 98, 455, 1145, 1253, 1286
HpyCH4III ACNGT 5 cut(s) 78, 136, 480, 659, 707
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 7 cut(s) 55, 174, 259, 292, 581, 837, 1079
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 6 cut(s) 46, 687, 762, 983, 1096, 1429
HpySE526I ACGT 1 cut(s) 922
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 212, 296
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
Kzo9I GATC 5 cut(s) 261, 318, 451, 712, 1267
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 4 cut(s) 222, 276, 298, 1033
LweI GCATC 5 cut(s) 183, 568, 722, 796, 1088
MaeI CTAG 4 cut(s) 281, 548, 801, 1016
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 3 cut(s) 521, 644, 1069
MalI GATC 5 cut(s) 263, 320, 453, 714, 1269
MboI GATC 5 cut(s) 261, 318, 451, 712, 1267
MfeI CAATTG 2 cut(s) 594, 1155
MhlI GDGCHC 1 cut(s) 1105
MluCI AATT 9 cut(s) 216, 369, 400, 562, 594, 826, 1155, 1247, 1449
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 2 cut(s) 787, 956
MmeI TCCRAC 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 176
MroXI GAANNNNTTC 2 cut(s) 497, 1242
MseI TTAA 3 cut(s) 989, 1127, 1353
MslI CAYNNNNRTG 2 cut(s) 708, 1378
MspA1I CMGCKG 2 cut(s) 289, 1433
MspCI CTTAAG 1 cut(s) 1126
MspI CCGG 2 cut(s) 634, 995
MspR9I CCNGG 1 cut(s) 996
MunI CAATTG 2 cut(s) 594, 1155
MvnI CGCG 1 cut(s) 1272
MwoI GCNNNNNNNGC 1 cut(s) 617
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 1 cut(s) 996
NcoI CCATGG 1 cut(s) 208
NdeII GATC 5 cut(s) 261, 318, 451, 712, 1267
NlaIII CATG 2 cut(s) 212, 296
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 1069
NsiI ATGCAT 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 708
PceI AGGCCT 1 cut(s) 1134
PdmI GAANNNNTTC 2 cut(s) 497, 1242
PfeI GAWTC 5 cut(s) 230, 308, 514, 674, 1008
PflMI CCANNNNNTGG 1 cut(s) 596
PinAI ACCGGT 1 cut(s) 633
PkrI GCNGC 4 cut(s) 237, 288, 291, 1048
PleI GAGTC 2 cut(s) 787, 955
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 2 cut(s) 787, 955
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 631
PvuII CAGCTG 2 cut(s) 289, 1433
RsaI GTAC 4 cut(s) 342, 702, 1039, 1087
RsaNI GTAC 4 cut(s) 341, 701, 1038, 1086
RseI CAYNNNNRTG 2 cut(s) 708, 1378
SaqAI TTAA 3 cut(s) 989, 1127, 1353
SatI GCNGC 4 cut(s) 236, 287, 290, 1047
Sau3AI GATC 5 cut(s) 261, 318, 451, 712, 1267
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 2 cut(s) 787, 956
ScrFI CCNGG 1 cut(s) 996
SduI GDGCHC 1 cut(s) 1105
SfaNI GCATC 5 cut(s) 183, 568, 722, 796, 1088
SfcI CTRYAG 1 cut(s) 1021
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 1 cut(s) 631
SmiMI CAYNNNNRTG 2 cut(s) 708, 1378
SmlI CTYRAG 3 cut(s) 898, 1126, 1162
SmoI CTYRAG 3 cut(s) 898, 1126, 1162
Sse9I AATT 9 cut(s) 216, 369, 400, 562, 594, 826, 1155, 1247, 1449
SseBI AGGCCT 1 cut(s) 1134
SsiI CCGC 1 cut(s) 870
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 4 cut(s) 281, 548, 801, 1016
StuI AGGCCT 1 cut(s) 1134
StyD4I CCNGG 1 cut(s) 994
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 5 cut(s) 78, 136, 480, 659, 707
TaiI ACGT 1 cut(s) 925
TasI AATT 9 cut(s) 216, 369, 400, 562, 594, 826, 1155, 1247, 1449
TatI WGTACW 2 cut(s) 700, 1085
TfiI GAWTC 5 cut(s) 230, 308, 514, 674, 1008
Tru1I TTAA 3 cut(s) 989, 1127, 1353
Tru9I TTAA 3 cut(s) 989, 1127, 1353
TscAI CASTG 3 cut(s) 454, 664, 1380
TseFI GTSAC 1 cut(s) 1069
TseI GCWGC 4 cut(s) 235, 286, 289, 1046
Tsp45I GTSAC 1 cut(s) 1069
TspDTI ATGAA 5 cut(s) 130, 312, 453, 990, 1346
TspRI CASTG 3 cut(s) 454, 664, 1380
Van91I CCANNNNNTGG 1 cut(s) 596
Vha464I CTTAAG 1 cut(s) 1126
VpaK11BI GGWCC 1 cut(s) 631
XapI RAATTY 2 cut(s) 400, 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 1213
XmnI GAANNNNTTC 2 cut(s) 497, 1242
XspI CTAG 4 cut(s) 281, 548, 801, 1016
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.