RLG00000021517

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018092
Physical Location & Seq
Forward (+)
76142156 .. 76142930
775 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021517

Sequence Viewer

Length: 426 bp
ATGTCTCATTGGGGCAGAACTCGGGTTCGAGACTGCAATCGGAATTCTCGAGCAGAATCCGGCGATAACCCACTCGGTCATCGACACTCCTGCGTTCTCGAAGGCATCGAAGATTTTCTGGTCGCAGTTGAGGACGACTGCTGTCTGTTCTGCAAAACGGAGCTGAGCTCCTTACCGGATCGGGTCCTCTGGTCTGGCGGCGATTTGAGGCTGTTGAAATCGGAATGGGTTGCCGCATTTGAGAACCAGAGGAAGAAGAAGCTAGAGAGGTCCAATGTGAGCTTCTTCGACGACCAACCCTTTAAGGCTGCGAATACAGAGCTCGTATACTGCCAATGTCATCCTGTGCAAAGCCCCCTTCGTCTGCCCGGGGTTTATATACGCATGCATGATGGCCTCACGAATCGTACTGTGCTGAAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.15

Weight (kDa)

7.62

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018092)

Species Orthologous Gene IDs
malus_domestica MD13G1210300.v1.1
prunus_persica Prupe.3G302100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391461 RchiOBHm_Chr4g0391621
rosa_laevigata RLG00000021517
rosa_multiflora Rmu_sc0001174.1_g000015
rosa_roxburghii Rroxscaffold_3G00220420
rosa_samantha Rh2AG655400 Rh2BG627100 Rh2BG666600 Rh4AG038100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 327
AciI CCGC 2 cut(s) 198, 234
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 43
AfaI GTAC 1 cut(s) 409
AgsI TTSAA 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 5 cut(s) 163, 168, 262, 282, 322
AluI AGCT 5 cut(s) 163, 168, 262, 282, 322
Alw21I GWGCWC 2 cut(s) 170, 324
Alw26I GTCTC 2 cut(s) 9, 24
AlwI GGATC 1 cut(s) 186
Ama87I CYCGRG 3 cut(s) 21, 48, 368
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 184, 270
AsuC2I CCSGG 2 cut(s) 369, 370
AvaI CYCGRG 3 cut(s) 21, 48, 368
AvaII GGWCC 2 cut(s) 184, 270
BanII GRGCYC 2 cut(s) 170, 324
Bbv12I GWGCWC 2 cut(s) 170, 324
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 386
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BcnI CCSGG 2 cut(s) 369, 370
BcoDI GTCTC 2 cut(s) 9, 24
BfaI CTAG 2 cut(s) 263, 424
BisI GCNGC 3 cut(s) 199, 234, 309
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 3 cut(s) 200, 235, 310
Bme1390I CCNGG 2 cut(s) 369, 370
Bme18I GGWCC 2 cut(s) 184, 270
BmeT110I CYCGRG 3 cut(s) 21, 48, 368
BmgT120I GGNCC 2 cut(s) 184, 270
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 2 cut(s) 369, 370
BmsI GCATC 1 cut(s) 114
BoxI GACNNNNGTC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bpu1102I GCTNAGC 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 369, 370
BsaJI CCNNGG 2 cut(s) 368, 369
BsaWI WCCGGW 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 368, 369
BseGI GGATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 170, 324
BsiHKCI CYCGRG 3 cut(s) 21, 48, 368
BsiSI CCGG 3 cut(s) 60, 176, 369
BsmAI GTCTC 2 cut(s) 9, 24
BsnI GGCC 1 cut(s) 396
BsoBI CYCGRG 3 cut(s) 21, 48, 368
Bsp1286I GDGCHC 2 cut(s) 170, 324
Bsp143I GATC 1 cut(s) 178
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 2 cut(s) 198, 234
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 185
BspPI GGATC 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 368, 369
BssMI GATC 1 cut(s) 178
BssNAI GTATAC 1 cut(s) 328
Bst1107I GTATAC 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 9, 24
BstMBI GATC 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 388
BstPAI GACNNNNGTC 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 367, 368
BstV1I GCAGC 1 cut(s) 295
BstZ17I GTATAC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 184, 270
Cfr9I CCCGGG 1 cut(s) 368
Csp6I GTAC 1 cut(s) 408
CviAII CATG 2 cut(s) 385, 389
CviJI RGCY 9 cut(s) 163, 168, 211, 262, 282, 308, 322, 354, 396
CviKI_1 RGCY 9 cut(s) 163, 168, 211, 262, 282, 308, 322, 354, 396
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Ecl136II GAGCTC 2 cut(s) 168, 322
Eco24I GRGCYC 2 cut(s) 170, 324
Eco47I GGWCC 2 cut(s) 184, 270
Eco53kI GAGCTC 2 cut(s) 168, 322
Eco88I CYCGRG 3 cut(s) 21, 48, 368
EcoICRI GAGCTC 2 cut(s) 168, 322
EcoO109I RGGNCCY 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 2 cut(s) 170, 324
FaeI CATG 2 cut(s) 388, 392
FaiI YATR 5 cut(s) 328, 378, 380, 386, 390
FatI CATG 2 cut(s) 384, 388
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 3 cut(s) 199, 234, 309
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 2 cut(s) 170, 324
Fsp4HI GCNGC 3 cut(s) 199, 234, 309
FspBI CTAG 2 cut(s) 263, 424
GluI GCNGC 3 cut(s) 199, 234, 309
HaeIII GGCC 1 cut(s) 396
HapII CCGG 3 cut(s) 60, 176, 369
Hin1II CATG 2 cut(s) 388, 392
HinfI GANTC 2 cut(s) 56, 403
HpaII CCGG 3 cut(s) 60, 176, 369
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 42, 223
Hpy188III TCNNGA 4 cut(s) 29, 48, 98, 400
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 95, 368
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 4 cut(s) 36, 153, 349, 388
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 2 cut(s) 388, 392
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 160, 173
LpnPI CCDG 9 cut(s) 73, 103, 104, 175, 180, 189, 260, 357, 382
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 1 cut(s) 114
MaeI CTAG 2 cut(s) 263, 424
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 4 cut(s) 122, 265, 268, 277
MhlI GDGCHC 2 cut(s) 170, 324
MluCI AATT 1 cut(s) 43
MnlI CCTC 6 cut(s) 124, 197, 201, 243, 261, 407
Mph1103I ATGCAT 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 1 cut(s) 303
MspI CCGG 3 cut(s) 60, 176, 369
MspR9I CCNGG 2 cut(s) 369, 370
NciI CCSGG 2 cut(s) 369, 370
NdeII GATC 1 cut(s) 178
NlaIII CATG 2 cut(s) 388, 392
NlaIV GGNNCC 1 cut(s) 185
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 388
PaeI GCATGC 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 48
PcsI WCGNNNNNNNCGW 2 cut(s) 46, 105
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 56, 403
PkrI GCNGC 3 cut(s) 200, 235, 310
PpuMI RGGWCCY 1 cut(s) 184
PshAI GACNNNNGTC 1 cut(s) 141
Psp124BI GAGCTC 2 cut(s) 170, 324
Psp5II RGGWCCY 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 2 cut(s) 184, 270
PspPPI RGGWCCY 1 cut(s) 184
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SacI GAGCTC 2 cut(s) 170, 324
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 199, 234, 309
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 2 cut(s) 184, 270
ScrFI CCNGG 2 cut(s) 369, 370
SduI GDGCHC 2 cut(s) 170, 324
SetI ASST 6 cut(s) 165, 170, 264, 272, 284, 324
SfaNI GCATC 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 48
SinI GGWCC 2 cut(s) 184, 270
SlaI CTCGAG 1 cut(s) 48
SmaI CCCGGG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SphI GCATGC 1 cut(s) 388
Sse9I AATT 1 cut(s) 43
SsiI CCGC 2 cut(s) 198, 234
SspMI CTAG 2 cut(s) 263, 424
SstI GAGCTC 2 cut(s) 170, 324
StyD4I CCNGG 2 cut(s) 367, 368
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 6 cut(s) 28, 49, 82, 99, 108, 288
TaqII GACCGA 1 cut(s) 65
TasI AATT 1 cut(s) 43
TauI GCSGC 2 cut(s) 201, 236
TfiI GAWTC 2 cut(s) 56, 403
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 308
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 184, 270
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 388
XhoI CTCGAG 1 cut(s) 48
XmaI CCCGGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 263, 424
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.