Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018092

Physical Location & Seq

Genomic Coordinates Reverse (-)

87233658 .. 87237601

Gene Structure 3944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG655400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAATATTGTTTGTATTCTGCATACTTTCTATTGGTATGTGTTTTCAGGCAGAGATTCAATCTCATGTGCAACCTGGATCTGTATCGGTATATATATATATTATGGACAAAGTAGACCAAAAGATGCGACTCTTTTAGCTCAAAGTGACGTTGCGATCACTACATATGGCGTTTTACCATCAGAGTTTTCTATAGAGAATTCTAAGGACAACGGGGGACTTCACTCAGTTAGTTGGTTTAGAGTGGTTCTTGATGAAGCGCACACCATAAAATCCTCTAAAAGCCAAATCTCTACTGCTGCTGCTGCCTTAGTTGCTGGTCGCCGATGGTGTCTTACTGGCACCCCCATACAGAACAATCTGGAGGACATTTATAGTCTACTCCGATTTTTGAGGGTAGAACCTTGGGCGAATTGGGCTTGGTGGAATAAACTCATCCAGAAACCCTTTGAGGAGGGTGATGAGAAAGGGTTAAAGCTGGTTCAATCTATCTTAAAGACGATTATGTTAAGGAGAACCAAGTTTAGCACTGATCGTGAAGGCAGTCGAGGTGATACACAAGAATATTCAGATCTGAATAAGCTTGCAAGACGCTCAAAAAGCATTGTCTTCAGCCAGTGGACAGCCTTTCTGGACCTCCTGCAGATACCTCTTTCTCGGAGTAACATTCCATTTTTGCGCCTGGATGGGACTCTGAATCAACAGCAGCGCGAAAAAGTGTTAAAACAGTTTTCAGAAGACAGTGACATTCTGGTGTTGCTAATGTCACTGAAGGCCGGAGGAGTTGGAATAAATTTAACAGCAGCATCCAATGCCTTTGTCTTGGATCCATGGTGGAATCCAGCTGTAGAGGAACAAGCGGTCATGCGTATTCATCGCATCGGACAAACAAAAAGTGTGATGATCAAACGATTTATCGTGAAGGGAACAGTCGAGGAAAGAATGGAAGCAGTGCAAGCTCGTAAACAGCGGTTAATTTCTGGCGCCTTGACTGACCAAGAAGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

336

Amino Acids

38.23

Weight (kDa)

9.28

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	29 - 176	9.2e-40	SNF2-related domain
Helicase_C	PF00271	195 - 295	4.3e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018092)

Species	Orthologous Gene IDs
malus_domestica	MD13G1210300.v1.1
prunus_persica	Prupe.3G302100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0391461 RchiOBHm_Chr4g0391621
rosa_laevigata	RLG00000021517
rosa_multiflora	Rmu_sc0001174.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220420
rosa_samantha	Rh2AG655400 Rh2BG627100 Rh2BG666600 Rh4AG038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	341, 983
AccI	GTMKAC	2 cut(s)	115, 379
AccII	CGCG	1 cut(s)	711
AciI	CCGC	2 cut(s)	860, 970
AclWI	GGATC	3 cut(s)	86, 821, 834
AcsI	RAATTY	2 cut(s)	199, 793
AcuI	CTGAAG	2 cut(s)	595, 791
AcyI	GRCGYC	1 cut(s)	984
AgsI	TTSAA	2 cut(s)	60, 485
AjnI	CCWGG	2 cut(s)	74, 681
AluBI	AGCT	5 cut(s)	140, 478, 583, 845, 959
AluI	AGCT	5 cut(s)	140, 478, 583, 845, 959
AlwI	GGATC	3 cut(s)	86, 821, 834
AoxI	GGCC	1 cut(s)	774
ApeKI	GCWGC	5 cut(s)	299, 302, 305, 706, 803
ApoI	RAATTY	2 cut(s)	199, 793
AspLEI	GCGC	4 cut(s)	262, 681, 711, 986
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	2 cut(s)	470, 563
AvaII	GGWCC	1 cut(s)	634
BamHI	GGATCC	1 cut(s)	826
BanI	GGYRCC	2 cut(s)	341, 983
BbsI	GAAGAC	2 cut(s)	601, 744
BbvI	GCAGC	5 cut(s)	286, 289, 292, 718, 815
BccI	CCATC	3 cut(s)	187, 321, 680
BciT130I	CCWGG	2 cut(s)	76, 683
BclI	TGATCA	1 cut(s)	903
BfmI	CTRYAG	3 cut(s)	192, 641, 846
BfoI	RGCGCY	1 cut(s)	987
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	5 cut(s)	300, 303, 306, 707, 804
BlsI	GCNGC	5 cut(s)	301, 304, 307, 708, 805
Bme1390I	CCNGG	2 cut(s)	76, 683
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	3 cut(s)	343, 828, 985
BmrFI	CCNGG	2 cut(s)	76, 683
BmsI	GCATC	3 cut(s)	115, 815, 888
BpiI	GAAGAC	2 cut(s)	601, 744
BpmI	CTGGAG	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	984
BsaJI	CCNNGG	2 cut(s)	404, 830
Bse1I	ACTGG	2 cut(s)	343, 616
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	76, 683
BseDI	CCNNGG	2 cut(s)	404, 830
BseGI	GGATG	3 cut(s)	435, 691, 806
BseJI	GATNNNNATC	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	343, 616
BseRI	GAGGAG	2 cut(s)	467, 795
BseXI	GCAGC	5 cut(s)	286, 289, 292, 718, 815
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	776
BshNI	GGYRCC	2 cut(s)	341, 983
BsiSI	CCGG	1 cut(s)	777
BslFI	GGGAC	2 cut(s)	231, 703
BsmFI	GGGAC	2 cut(s)	231, 703
BsnI	GGCC	1 cut(s)	776
Bsp143I	GATC	6 cut(s)	78, 156, 532, 571, 826, 903
Bsp19I	CCATGG	1 cut(s)	830
BspACI	CCGC	2 cut(s)	860, 970
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	711
BspLI	GGNNCC	3 cut(s)	343, 828, 985
BspMAI	CTGCAG	1 cut(s)	645
BspPI	GGATC	3 cut(s)	86, 821, 834
BspT107I	GGYRCC	2 cut(s)	341, 983
BsrI	ACTGG	2 cut(s)	343, 616
BssECI	CCNNGG	2 cut(s)	404, 830
BssMI	GATC	6 cut(s)	78, 156, 532, 571, 826, 903
BssNI	GRCGYC	1 cut(s)	984
BssT1I	CCWWGG	2 cut(s)	404, 830
Bst2UI	CCWGG	2 cut(s)	76, 683
Bst4CI	ACNGT	3 cut(s)	729, 743, 931
BstACI	GRCGYC	1 cut(s)	984
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	585, 957
BstDEI	CTNAG	3 cut(s)	204, 226, 310
BstDSI	CCRYGG	1 cut(s)	830
BstF5I	GGATG	3 cut(s)	435, 691, 806
BstFNI	CGCG	1 cut(s)	711
BstH2I	RGCGCY	1 cut(s)	987
BstHHI	GCGC	4 cut(s)	262, 681, 711, 986
BstKTI	GATC	6 cut(s)	81, 159, 535, 574, 829, 906
BstMBI	GATC	6 cut(s)	78, 156, 532, 571, 826, 903
BstMWI	GCNNNNNNNGC	6 cut(s)	305, 314, 416, 600, 812, 956
BstNI	CCWGG	2 cut(s)	76, 683
BstSCI	CCNGG	2 cut(s)	74, 681
BstSFI	CTRYAG	3 cut(s)	192, 641, 846
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	5 cut(s)	286, 289, 292, 718, 815
BstV2I	GAAGAC	2 cut(s)	601, 744
BstX2I	RGATCY	3 cut(s)	78, 571, 826
BstYI	RGATCY	3 cut(s)	78, 571, 826
BsuRI	GGCC	1 cut(s)	776
BtgI	CCRYGG	1 cut(s)	830
BtgZI	GCGATG	1 cut(s)	860
BtsCI	GGATG	3 cut(s)	435, 691, 806
BtsI	GCAGTG	1 cut(s)	957
BtsIMutI	CAGTG	5 cut(s)	528, 623, 748, 767, 957
Cac8I	GCNNGC	2 cut(s)	585, 957
CfoI	GCGC	4 cut(s)	262, 681, 711, 986
Cfr13I	GGNCC	1 cut(s)	634
CseI	GACGC	1 cut(s)	600
CviAII	CATG	3 cut(s)	66, 831, 865
DdeI	CTNAG	3 cut(s)	204, 226, 310
DinI	GGCGCC	1 cut(s)	985
DpnI	GATC	6 cut(s)	80, 158, 534, 573, 828, 905
DpnII	GATC	6 cut(s)	78, 156, 532, 571, 826, 903
Eco130I	CCWWGG	2 cut(s)	404, 830
Eco47I	GGWCC	1 cut(s)	634
Eco57I	CTGAAG	2 cut(s)	595, 791
EcoRI	GAATTC	1 cut(s)	199
EcoRII	CCWGG	2 cut(s)	74, 681
EcoT14I	CCWWGG	2 cut(s)	404, 830
EgeI	GGCGCC	1 cut(s)	985
EheI	GGCGCC	1 cut(s)	985
ErhI	CCWWGG	2 cut(s)	404, 830
FaeI	CATG	3 cut(s)	69, 834, 868
FaqI	GGGAC	2 cut(s)	231, 703
FatI	CATG	3 cut(s)	65, 830, 864
FauNDI	CATATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	903
FblI	GTMKAC	2 cut(s)	115, 379
Fnu4HI	GCNGC	5 cut(s)	300, 303, 306, 707, 804
FokI	GGATG	3 cut(s)	422, 698, 793
Fsp4HI	GCNGC	5 cut(s)	300, 303, 306, 707, 804
GlaI	GCGC	4 cut(s)	261, 680, 710, 985
GluI	GCNGC	5 cut(s)	300, 303, 306, 707, 804
GsuI	CTGGAG	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	987
HaeIII	GGCC	1 cut(s)	776
HapII	CCGG	1 cut(s)	777
HgaI	GACGC	1 cut(s)	600
HhaI	GCGC	4 cut(s)	262, 681, 711, 986
Hin1I	GRCGYC	1 cut(s)	984
Hin1II	CATG	3 cut(s)	69, 834, 868
Hin6I	GCGC	4 cut(s)	260, 679, 709, 984
HinP1I	GCGC	4 cut(s)	260, 679, 709, 984
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	5 cut(s)	56, 130, 691, 697, 838
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	2 cut(s)	470, 563
Hpy166II	GTNNAC	4 cut(s)	116, 380, 621, 965
Hpy188I	TCNGA	8 cut(s)	184, 386, 571, 576, 660, 696, 736, 884
Hpy188III	TCNNGA	6 cut(s)	251, 362, 439, 536, 632, 919
Hpy8I	GTNNAC	4 cut(s)	116, 380, 621, 965
HpyAV	CCTTC	3 cut(s)	533, 766, 916
HpyCH4III	ACNGT	3 cut(s)	729, 743, 931
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	22, 71, 587, 643, 955
HpyF10VI	GCNNNNNNNGC	6 cut(s)	305, 314, 416, 600, 812, 956
HpyF3I	CTNAG	3 cut(s)	204, 226, 310
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	984
Hsp92II	CATG	3 cut(s)	69, 834, 868
HspAI	GCGC	4 cut(s)	260, 679, 709, 984
KasI	GGCGCC	1 cut(s)	983
Ksp22I	TGATCA	1 cut(s)	903
Kzo9I	GATC	6 cut(s)	78, 156, 532, 571, 826, 903
Lsp1109I	GCAGC	5 cut(s)	286, 289, 292, 718, 815
LweI	GCATC	3 cut(s)	115, 815, 888
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	146, 662, 743, 765
MalI	GATC	6 cut(s)	80, 158, 534, 573, 828, 905
MboI	GATC	6 cut(s)	78, 156, 532, 571, 826, 903
MboII	GAAGA	2 cut(s)	601, 749
MflI	RGATCY	3 cut(s)	78, 571, 826
MluCI	AATT	4 cut(s)	199, 412, 793, 975
Mly113I	GGCGCC	1 cut(s)	984
MlyI	GAGTC	2 cut(s)	124, 685
MmeI	TCCRAC	1 cut(s)	766
MseI	TTAA	6 cut(s)	473, 494, 509, 722, 797, 974
MslI	CAYNNNNRTG	1 cut(s)	752
MspA1I	CMGCKG	2 cut(s)	845, 970
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	2 cut(s)	76, 683
MvaI	CCWGG	2 cut(s)	76, 683
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	6 cut(s)	305, 314, 416, 600, 812, 956
NarI	GGCGCC	1 cut(s)	984
NcoI	CCATGG	1 cut(s)	830
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	6 cut(s)	78, 156, 532, 571, 826, 903
NlaIII	CATG	3 cut(s)	69, 834, 868
NlaIV	GGNNCC	3 cut(s)	343, 828, 985
NmuCI	GTSAC	3 cut(s)	146, 743, 765
PfeI	GAWTC	3 cut(s)	56, 697, 838
PkrI	GCNGC	5 cut(s)	301, 304, 307, 708, 805
PleI	GAGTC	2 cut(s)	124, 685
PluTI	GGCGCC	1 cut(s)	987
PpsI	GAGTC	2 cut(s)	124, 685
Psp6I	CCWGG	2 cut(s)	74, 681
PspGI	CCWGG	2 cut(s)	74, 681
PspN4I	GGNNCC	3 cut(s)	343, 828, 985
PspPI	GGNCC	1 cut(s)	634
PstI	CTGCAG	1 cut(s)	645
PsuI	RGATCY	3 cut(s)	78, 571, 826
PvuII	CAGCTG	1 cut(s)	845
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	6 cut(s)	473, 494, 509, 722, 797, 974
SatI	GCNGC	5 cut(s)	300, 303, 306, 707, 804
Sau3AI	GATC	6 cut(s)	78, 156, 532, 571, 826, 903
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	2 cut(s)	124, 685
ScrFI	CCNGG	2 cut(s)	76, 683
SfaNI	GCATC	3 cut(s)	115, 815, 888
SfcI	CTRYAG	3 cut(s)	192, 641, 846
SfoI	GGCGCC	1 cut(s)	985
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	752
Sse9I	AATT	4 cut(s)	199, 412, 793, 975
SsiI	CCGC	2 cut(s)	860, 970
SspDI	GGCGCC	1 cut(s)	983
SspI	AATATT	2 cut(s)	7, 566
StyD4I	CCNGG	2 cut(s)	74, 681
StyI	CCWWGG	2 cut(s)	404, 830
TaaI	ACNGT	3 cut(s)	729, 743, 931
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	547, 933
TasI	AATT	4 cut(s)	199, 412, 793, 975
TfiI	GAWTC	3 cut(s)	56, 697, 838
Tru1I	TTAA	6 cut(s)	473, 494, 509, 722, 797, 974
Tru9I	TTAA	6 cut(s)	473, 494, 509, 722, 797, 974
TscAI	CASTG	5 cut(s)	535, 623, 748, 774, 957
TseFI	GTSAC	3 cut(s)	146, 743, 765
TseI	GCWGC	5 cut(s)	299, 302, 305, 706, 803
Tsp45I	GTSAC	3 cut(s)	146, 743, 765
TspDTI	ATGAA	3 cut(s)	17, 270, 863
TspRI	CASTG	5 cut(s)	535, 623, 748, 774, 957
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	2 cut(s)	199, 793
XmiI	GTMKAC	2 cut(s)	115, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.