Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001174.1

Orthogroup ID

OG0018092

Physical Location & Seq

Genomic Coordinates Forward (+)

47480 .. 49645

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001174.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggaggagagagaaaccataggagactttgccagagcccggtcaccagtcgccggaatcctgccaactttcgccggattctggtcgcctgccgccgcccaccagattttgctaaaaatctcaccggaaagaactcgggttcgagactgcaatcggaattctcgagcagaatccagtgatatcggactcggtcattggcgctcctgggttctcgaaggcatcgaagattttctggtcgcggttgaggacgactgttgtttgttctacaaaacggagctgagctccttaccggatctggtcctcgggtccggcggcgagttgaggctgctgaaatcggaatgggttgccgcatttgagaaccagaggaagaagaagctagagaggtccagggtcagcttctccgacgagttggatccggccgggtccgaggggaagaggaagaacacggcggtggagaggggaaggaaagcgacgtcttcggacacggtggaggaacgcctgctacaagttcaggccaggaagcagagaatgattgccggagctctcactgatgaggaagttcgatctgctagaattgatgagctcaaaatgcttttcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

200

Amino Acids

22.51

Weight (kDa)

6.23

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018092)

Species	Orthologous Gene IDs
malus_domestica	MD13G1210300.v1.1
prunus_persica	Prupe.3G302100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0391461 RchiOBHm_Chr4g0391621
rosa_laevigata	RLG00000021517
rosa_multiflora	Rmu_sc0001174.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220420
rosa_samantha	Rh2AG655400 Rh2BG627100 Rh2BG666600 Rh4AG038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	476
AccII	CGCG	1 cut(s)	239
AciI	CCGC	6 cut(s)	93, 96, 239, 312, 348, 449
AclWI	GGATC	3 cut(s)	300, 407, 420
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	39, 53, 81
AjnI	CCWGG	3 cut(s)	203, 386, 515
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	6 cut(s)	277, 282, 376, 396, 542, 583
AluI	AGCT	6 cut(s)	277, 282, 376, 396, 542, 583
Alw21I	GWGCWC	3 cut(s)	284, 544, 585
Alw26I	GTCTC	2 cut(s)	18, 138
AlwI	GGATC	3 cut(s)	300, 407, 420
Ama87I	CYCGRG	3 cut(s)	135, 162, 302
AoxI	GGCC	2 cut(s)	417, 513
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	157
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	4 cut(s)	298, 306, 384, 423
AsuC2I	CCSGG	2 cut(s)	40, 421
AsuHPI	GGTGA	2 cut(s)	36, 114
AvaI	CYCGRG	3 cut(s)	135, 162, 302
AvaII	GGWCC	4 cut(s)	298, 306, 384, 423
BamHI	GGATCC	1 cut(s)	412
BanII	GRGCYC	4 cut(s)	40, 284, 544, 585
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	3 cut(s)	284, 544, 585
BbvI	GCAGC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	3 cut(s)	205, 388, 517
BcnI	CCSGG	2 cut(s)	40, 421
BcoDI	GTCTC	2 cut(s)	18, 138
BfaI	CTAG	2 cut(s)	377, 570
BfoI	RGCGCY	1 cut(s)	202
BisI	GCNGC	5 cut(s)	93, 96, 313, 326, 348
BlpI	GCTNAGC	1 cut(s)	278
BlsI	GCNGC	5 cut(s)	94, 97, 314, 327, 349
Bme1390I	CCNGG	5 cut(s)	40, 205, 388, 421, 517
Bme18I	GGWCC	4 cut(s)	298, 306, 384, 423
BmeT110I	CYCGRG	3 cut(s)	135, 162, 302
BmgT120I	GGNCC	4 cut(s)	298, 306, 384, 423
BmiI	GGNNCC	3 cut(s)	307, 414, 424
BmrFI	CCNGG	5 cut(s)	40, 205, 388, 421, 517
BmsI	GCATC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	468
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu1102I	GCTNAGC	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	40, 421
BsaHI	GRCGYC	1 cut(s)	473
BsaJI	CCNNGG	4 cut(s)	204, 301, 387, 426
BsaWI	WCCGGW	2 cut(s)	124, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 53, 81
Bse1I	ACTGG	2 cut(s)	47, 174
BseBI	CCWGG	3 cut(s)	205, 388, 517
BseDI	CCNNGG	4 cut(s)	204, 301, 387, 426
BseLI	CCNNNNNNNGG	3 cut(s)	39, 53, 81
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	47, 174
BseRI	GAGGAG	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	417
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	419, 515
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	3 cut(s)	284, 544, 585
BsiHKCI	CYCGRG	3 cut(s)	135, 162, 302
BsiSI	CCGG	9 cut(s)	40, 54, 75, 125, 290, 309, 416, 420, 537
BslI	CCNNNNNNNGG	3 cut(s)	39, 53, 81
BsmAI	GTCTC	2 cut(s)	18, 138
BsnI	GGCC	2 cut(s)	419, 515
BsoBI	CYCGRG	3 cut(s)	135, 162, 302
Bsp1286I	GDGCHC	4 cut(s)	40, 284, 544, 585
Bsp143I	GATC	3 cut(s)	292, 412, 563
Bsp1720I	GCTNAGC	1 cut(s)	278
BspACI	CCGC	6 cut(s)	93, 96, 239, 312, 348, 449
BspANI	GGCC	2 cut(s)	419, 515
BspCNI	CTCAG	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	3 cut(s)	307, 414, 424
BspPI	GGATC	3 cut(s)	300, 407, 420
BsrI	ACTGG	2 cut(s)	47, 174
BssECI	CCNNGG	4 cut(s)	204, 301, 387, 426
BssMI	GATC	3 cut(s)	292, 412, 563
BssNI	GRCGYC	1 cut(s)	473
Bst2UI	CCWGG	3 cut(s)	205, 388, 517
Bst4CI	ACNGT	2 cut(s)	254, 487
Bst6I	CTCTTC	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	90, 500
BstDEI	CTNAG	1 cut(s)	278
BstEII	GGTNACC	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	3 cut(s)	295, 415, 566
BstMAI	GTCTC	2 cut(s)	18, 138
BstMBI	GATC	3 cut(s)	292, 412, 563
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	1 cut(s)	589
BstNI	CCWGG	3 cut(s)	205, 388, 517
BstPI	GGTNACC	1 cut(s)	42
BstSCI	CCNGG	5 cut(s)	38, 203, 386, 419, 515
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	2 cut(s)	292, 412
BstYI	RGATCY	2 cut(s)	292, 412
BstZI	CGGCCG	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	419, 515
BtsIMutI	CAGTG	2 cut(s)	181, 546
Cac8I	GCNNGC	2 cut(s)	90, 500
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	4 cut(s)	298, 306, 384, 423
CviAII	CATG	1 cut(s)	600
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	3 cut(s)	294, 414, 565
DpnII	GATC	3 cut(s)	292, 412, 563
EaeI	YGGCCR	1 cut(s)	417
EagI	CGGCCG	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Ecl136II	GAGCTC	3 cut(s)	282, 542, 583
EclXI	CGGCCG	1 cut(s)	417
Eco24I	GRGCYC	4 cut(s)	40, 284, 544, 585
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	4 cut(s)	298, 306, 384, 423
Eco52I	CGGCCG	1 cut(s)	417
Eco53kI	GAGCTC	3 cut(s)	282, 542, 583
Eco88I	CYCGRG	3 cut(s)	135, 162, 302
Eco91I	GGTNACC	1 cut(s)	42
EcoICRI	GAGCTC	3 cut(s)	282, 542, 583
EcoO65I	GGTNACC	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	3 cut(s)	203, 386, 515
EcoRV	GATATC	1 cut(s)	181
EcoT38I	GRGCYC	4 cut(s)	40, 284, 544, 585
FaeI	CATG	1 cut(s)	603
FaiI	YATR	2 cut(s)	20, 601
FatI	CATG	1 cut(s)	599
Fnu4HI	GCNGC	5 cut(s)	93, 96, 313, 326, 348
FriOI	GRGCYC	4 cut(s)	40, 284, 544, 585
Fsp4HI	GCNGC	5 cut(s)	93, 96, 313, 326, 348
FspBI	CTAG	2 cut(s)	377, 570
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	5 cut(s)	93, 96, 313, 326, 348
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	419, 515
HapII	CCGG	9 cut(s)	40, 54, 75, 125, 290, 309, 416, 420, 537
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	1 cut(s)	603
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	57, 78, 170, 186
HpaII	CCGG	9 cut(s)	40, 54, 75, 125, 290, 309, 416, 420, 537
HphI	GGTGA	2 cut(s)	36, 114
Hpy188I	TCNGA	6 cut(s)	156, 185, 337, 403, 427, 481
Hpy188III	TCNNGA	3 cut(s)	143, 162, 212
Hpy99I	CGWCG	2 cut(s)	407, 475
HpyAV	CCTTC	2 cut(s)	209, 456
HpyCH4III	ACNGT	2 cut(s)	254, 487
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	589
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	1 cut(s)	603
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	292, 412, 563
LmnI	GCTCC	4 cut(s)	206, 274, 287, 539
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	377, 570
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	3 cut(s)	294, 414, 565
MboI	GATC	3 cut(s)	292, 412, 563
MboII	GAAGA	6 cut(s)	236, 379, 382, 445, 451, 468
MflI	RGATCY	2 cut(s)	292, 412
MhlI	GDGCHC	4 cut(s)	40, 284, 544, 585
MluCI	AATT	2 cut(s)	157, 573
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	390, 426
MroXI	GAANNNNTTC	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	9 cut(s)	40, 54, 75, 125, 290, 309, 416, 420, 537
MspR9I	CCNGG	5 cut(s)	40, 205, 388, 421, 517
MvaI	CCWGG	3 cut(s)	205, 388, 517
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	589
NciI	CCSGG	2 cut(s)	40, 421
NdeII	GATC	3 cut(s)	292, 412, 563
NlaIII	CATG	1 cut(s)	603
NlaIV	GGNNCC	3 cut(s)	307, 414, 424
NmuCI	GTSAC	1 cut(s)	42
OliI	CACNNNNGTG	1 cut(s)	449
PaeR7I	CTCGAG	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	2 cut(s)	160, 219
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	57, 78, 170
PflFI	GACNNNGTC	1 cut(s)	189
PkrI	GCNGC	5 cut(s)	94, 97, 314, 327, 349
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp124BI	GAGCTC	3 cut(s)	284, 544, 585
Psp6I	CCWGG	3 cut(s)	203, 386, 515
PspEI	GGTNACC	1 cut(s)	42
PspGI	CCWGG	3 cut(s)	203, 386, 515
PspN4I	GGNNCC	3 cut(s)	307, 414, 424
PspPI	GGNCC	4 cut(s)	298, 306, 384, 423
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PsuI	RGATCY	2 cut(s)	292, 412
PsyI	GACNNNGTC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	449
SacI	GAGCTC	3 cut(s)	284, 544, 585
SatI	GCNGC	5 cut(s)	93, 96, 313, 326, 348
Sau3AI	GATC	3 cut(s)	292, 412, 563
Sau96I	GGNCC	4 cut(s)	298, 306, 384, 423
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	5 cut(s)	40, 205, 388, 421, 517
SduI	GDGCHC	4 cut(s)	40, 284, 544, 585
SetI	ASST	8 cut(s)	279, 284, 378, 386, 398, 476, 544, 585
SfaNI	GCATC	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	4 cut(s)	298, 306, 384, 423
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	157, 573
SsiI	CCGC	6 cut(s)	93, 96, 239, 312, 348, 449
SspMI	CTAG	2 cut(s)	377, 570
SstI	GAGCTC	3 cut(s)	284, 544, 585
StyD4I	CCNGG	5 cut(s)	38, 203, 386, 419, 515
TaaI	ACNGT	2 cut(s)	254, 487
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	5 cut(s)	142, 163, 213, 222, 562
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	2 cut(s)	157, 573
TauI	GCSGC	4 cut(s)	95, 98, 315, 350
TfiI	GAWTC	3 cut(s)	57, 78, 170
TscAI	CASTG	2 cut(s)	181, 553
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	181, 553
Tth111I	GACNNNGTC	1 cut(s)	189
VpaK11BI	GGWCC	4 cut(s)	298, 306, 384, 423
XapI	RAATTY	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	2 cut(s)	377, 570
ZraI	GACGTC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.