Rh2BG666600

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018092
Physical Location & Seq
Reverse (-)
87926467 .. 87930410
3944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG666600.1

Sequence Viewer

Length: 1221 bp
ATGAATATTGTTTGTATTCTGCATACTTTCTATTGGTATGTGTTTTCAGGCAGAGATTCAATCTCATGTGCAACCTGGATCTGTATCGGTATATATATATATTATGGACAAAGTAGACCAAAAGATGCGACTCTTTTAGCTCAAAGTGACGTTGCGATCACTACATATGGCGTTTTACCATCAGAGTTTTCTATAGAGAATTCTAAGGACAACGGGGGACTTCACTCAGTTAGTTGGTTTAGAGTGGTTCTTGATGAAGCGCACACCATAAAATCCTCTAAAAGCCAAATCTCTACTGCTGCTGCTGCCTTAGTTGCTGGTCGCCGATGGTGTCTTACTGGCACCCCCATACAGAACAATCTGGAGGACATTTATAGTCTACTCCGATTTTTGAGGGTAGAACCTTGGGCGAATTGGGCTTGGTGGAATAAACTCATCCAGAAACCCTTTGAGGAGGGTGATGAGAAAGGGTTAAAGCTGGTTCAATCTATCTTAAAGACGATTATGTTAAGGAGAACCAAGTTTAGCACTGATCGTGAAGGCAGGCATATTTTAGCCCTTCCTCCTGCTGATATTCATGTGGTTTACTGTGAACTCATAGAAGTTGAAAAAGACTTTTATGAGGCCTTGTTTAAAAGATCAAAGGTGAAATTTGATCAATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCATCCATATTGGAATTACTTTTACGCATTTGCCAATGTTGTGATCACCCATTTCTTGTGATGAGTCGAGTTGGCGGAATTCAACTTCTGGCTTATGTCCAGTTTGCAGGCTCAAAAAGCATTGTCTTCAGCCAGTGGACAGCCTTTCTGGACCTCCTGCAGATACCTCTTTCTCGGAGTAACATTCCATTTTTGCGCCTGGATGGGACTCTGAATCAACAGCAGCGCGAAAAAGTGTTAAAACAGTTTTCAGAAGACAGTGACATTCTGGTGTTGCTAATGTCACTGAAGGCCGGAGGAGTTGGAATAAATTTAACAGCAGCATCCAATGCCTTTGTCTTGGATCCATGGTGGAATCCAGCTGTAGAGGAACAAGCGGTCATGCGTATTCATCGCATCGGACAAACAAAAAGTGTGATGATCAAACGATTTATCGTGAAGGGAACAGTCGAGGAAAGAATGGAAGCAGTGCAAGCTCGTAAACAGCGGTTAATTTCTGGCGCCTTGACTGACCAAGAAGTTCGTTAG

Protein Analysis

406

Amino Acids

46.28

Weight (kDa)

8.8

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 29 - 249 7.2e-48 SNF2-related domain
Helicase_C PF00271 267 - 365 1.1e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018092)

Species Orthologous Gene IDs
malus_domestica MD13G1210300.v1.1
prunus_persica Prupe.3G302100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391461 RchiOBHm_Chr4g0391621
rosa_laevigata RLG00000021517
rosa_multiflora Rmu_sc0001174.1_g000015
rosa_roxburghii Rroxscaffold_3G00220420
rosa_samantha Rh2AG655400 Rh2BG627100 Rh2BG666600 Rh4AG038100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 341, 1193
AccI GTMKAC 2 cut(s) 115, 379
AccII CGCG 1 cut(s) 921
AciI CCGC 3 cut(s) 768, 1070, 1180
AclWI GGATC 3 cut(s) 86, 1031, 1044
AcsI RAATTY 4 cut(s) 199, 650, 771, 1003
AcuI CTGAAG 2 cut(s) 805, 1001
AcyI GRCGYC 1 cut(s) 1194
AgsI TTSAA 4 cut(s) 60, 485, 608, 776
AjnI CCWGG 2 cut(s) 74, 891
AluBI AGCT 4 cut(s) 140, 478, 1055, 1169
AluI AGCT 4 cut(s) 140, 478, 1055, 1169
AlwI GGATC 3 cut(s) 86, 1031, 1044
AoxI GGCC 2 cut(s) 624, 984
ApeKI GCWGC 5 cut(s) 299, 302, 305, 916, 1013
ApoI RAATTY 4 cut(s) 199, 650, 771, 1003
AspLEI GCGC 4 cut(s) 262, 891, 921, 1196
AspS9I GGNCC 1 cut(s) 844
AsuHPI GGTGA 3 cut(s) 470, 658, 731
AvaII GGWCC 1 cut(s) 844
BamHI GGATCC 1 cut(s) 1036
BanI GGYRCC 2 cut(s) 341, 1193
BbsI GAAGAC 2 cut(s) 811, 954
BbvI GCAGC 5 cut(s) 286, 289, 292, 928, 1025
BccI CCATC 3 cut(s) 187, 321, 890
BciT130I CCWGG 2 cut(s) 76, 893
BclI TGATCA 3 cut(s) 655, 736, 1113
BfmI CTRYAG 3 cut(s) 192, 851, 1056
BfoI RGCGCY 1 cut(s) 1197
BisI GCNGC 5 cut(s) 300, 303, 306, 917, 1014
BlsI GCNGC 5 cut(s) 301, 304, 307, 918, 1015
Bme1390I CCNGG 2 cut(s) 76, 893
Bme18I GGWCC 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 844
BmiI GGNNCC 3 cut(s) 343, 1038, 1195
BmrFI CCNGG 2 cut(s) 76, 893
BmsI GCATC 4 cut(s) 115, 704, 1025, 1098
BpiI GAAGAC 2 cut(s) 811, 954
BpmI CTGGAG 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 1194
BsaJI CCNNGG 2 cut(s) 404, 1040
Bse1I ACTGG 3 cut(s) 343, 793, 826
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 2 cut(s) 76, 893
BseDI CCNNGG 2 cut(s) 404, 1040
BseGI GGATG 4 cut(s) 435, 695, 901, 1016
BseJI GATNNNNATC 1 cut(s) 83
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 3 cut(s) 343, 793, 826
BseRI GAGGAG 2 cut(s) 467, 1005
BseXI GCAGC 5 cut(s) 286, 289, 292, 928, 1025
Bsh1236I CGCG 1 cut(s) 921
BshFI GGCC 2 cut(s) 626, 986
BshNI GGYRCC 2 cut(s) 341, 1193
BsiSI CCGG 1 cut(s) 987
BslFI GGGAC 2 cut(s) 231, 913
BsmFI GGGAC 2 cut(s) 231, 913
BsnI GGCC 2 cut(s) 626, 986
Bsp143I GATC 8 cut(s) 78, 156, 532, 638, 655, 736, 1036, 1113
Bsp19I CCATGG 1 cut(s) 1040
BspACI CCGC 3 cut(s) 768, 1070, 1180
BspANI GGCC 2 cut(s) 626, 986
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 1 cut(s) 921
BspLI GGNNCC 3 cut(s) 343, 1038, 1195
BspMAI CTGCAG 1 cut(s) 855
BspPI GGATC 3 cut(s) 86, 1031, 1044
BspT107I GGYRCC 2 cut(s) 341, 1193
BsrI ACTGG 3 cut(s) 343, 793, 826
BssECI CCNNGG 2 cut(s) 404, 1040
BssMI GATC 8 cut(s) 78, 156, 532, 638, 655, 736, 1036, 1113
BssNI GRCGYC 1 cut(s) 1194
BssT1I CCWWGG 2 cut(s) 404, 1040
Bst2UI CCWGG 2 cut(s) 76, 893
Bst4CI ACNGT 4 cut(s) 590, 939, 953, 1141
BstACI GRCGYC 1 cut(s) 1194
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstC8I GCNNGC 3 cut(s) 545, 802, 1167
BstDEI CTNAG 3 cut(s) 204, 226, 310
BstDSI CCRYGG 1 cut(s) 1040
BstF5I GGATG 4 cut(s) 435, 695, 901, 1016
BstFNI CGCG 1 cut(s) 921
BstH2I RGCGCY 1 cut(s) 1197
BstHHI GCGC 4 cut(s) 262, 891, 921, 1196
BstKTI GATC 8 cut(s) 81, 159, 535, 641, 658, 739, 1039, 1116
BstMBI GATC 8 cut(s) 78, 156, 532, 638, 655, 736, 1036, 1113
BstMWI GCNNNNNNNGC 6 cut(s) 305, 314, 416, 810, 1022, 1166
BstNI CCWGG 2 cut(s) 76, 893
BstSCI CCNGG 2 cut(s) 74, 891
BstSFI CTRYAG 3 cut(s) 192, 851, 1056
BstUI CGCG 1 cut(s) 921
BstV1I GCAGC 5 cut(s) 286, 289, 292, 928, 1025
BstV2I GAAGAC 2 cut(s) 811, 954
BstX2I RGATCY 2 cut(s) 78, 1036
BstYI RGATCY 2 cut(s) 78, 1036
BsuRI GGCC 2 cut(s) 626, 986
BtgI CCRYGG 1 cut(s) 1040
BtgZI GCGATG 1 cut(s) 1070
BtsCI GGATG 4 cut(s) 435, 695, 901, 1016
BtsI GCAGTG 1 cut(s) 1167
BtsIMutI CAGTG 5 cut(s) 528, 833, 958, 977, 1167
Cac8I GCNNGC 3 cut(s) 545, 802, 1167
CfoI GCGC 4 cut(s) 262, 891, 921, 1196
Cfr13I GGNCC 1 cut(s) 844
CviAII CATG 4 cut(s) 66, 578, 1041, 1075
DdeI CTNAG 3 cut(s) 204, 226, 310
DinI GGCGCC 1 cut(s) 1195
DpnI GATC 8 cut(s) 80, 158, 534, 640, 657, 738, 1038, 1115
DpnII GATC 8 cut(s) 78, 156, 532, 638, 655, 736, 1036, 1113
DraI TTTAAA 1 cut(s) 634
EciI GGCGGA 1 cut(s) 783
Eco130I CCWWGG 2 cut(s) 404, 1040
Eco147I AGGCCT 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 805, 1001
EcoRI GAATTC 2 cut(s) 199, 771
EcoRII CCWGG 2 cut(s) 74, 891
EcoT14I CCWWGG 2 cut(s) 404, 1040
EcoT22I ATGCAT 1 cut(s) 697
EgeI GGCGCC 1 cut(s) 1195
EheI GGCGCC 1 cut(s) 1195
ErhI CCWWGG 2 cut(s) 404, 1040
FaeI CATG 4 cut(s) 69, 581, 1044, 1078
FaqI GGGAC 2 cut(s) 231, 913
FatI CATG 4 cut(s) 65, 577, 1040, 1074
FauNDI CATATG 1 cut(s) 166
FbaI TGATCA 3 cut(s) 655, 736, 1113
FblI GTMKAC 2 cut(s) 115, 379
Fnu4HI GCNGC 5 cut(s) 300, 303, 306, 917, 1014
FokI GGATG 4 cut(s) 422, 682, 908, 1003
Fsp4HI GCNGC 5 cut(s) 300, 303, 306, 917, 1014
GlaI GCGC 4 cut(s) 261, 890, 920, 1195
GluI GCNGC 5 cut(s) 300, 303, 306, 917, 1014
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 1197
HaeIII GGCC 2 cut(s) 626, 986
HapII CCGG 1 cut(s) 987
HhaI GCGC 4 cut(s) 262, 891, 921, 1196
Hin1I GRCGYC 1 cut(s) 1194
Hin1II CATG 4 cut(s) 69, 581, 1044, 1078
Hin6I GCGC 4 cut(s) 260, 889, 919, 1194
HinP1I GCGC 4 cut(s) 260, 889, 919, 1194
HinfI GANTC 6 cut(s) 56, 130, 757, 901, 907, 1048
HpaII CCGG 1 cut(s) 987
HphI GGTGA 3 cut(s) 470, 658, 731
Hpy166II GTNNAC 6 cut(s) 116, 380, 586, 593, 831, 1175
Hpy188I TCNGA 6 cut(s) 184, 386, 870, 906, 946, 1094
Hpy188III TCNNGA 6 cut(s) 251, 362, 439, 536, 842, 1129
Hpy8I GTNNAC 6 cut(s) 116, 380, 586, 593, 831, 1175
HpyAV CCTTC 4 cut(s) 533, 569, 976, 1126
HpyCH4III ACNGT 4 cut(s) 590, 939, 953, 1141
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 6 cut(s) 22, 71, 695, 800, 853, 1165
HpyF10VI GCNNNNNNNGC 6 cut(s) 305, 314, 416, 810, 1022, 1166
HpyF3I CTNAG 3 cut(s) 204, 226, 310
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 1194
Hsp92II CATG 4 cut(s) 69, 581, 1044, 1078
HspAI GCGC 4 cut(s) 260, 889, 919, 1194
KasI GGCGCC 1 cut(s) 1193
Ksp22I TGATCA 3 cut(s) 655, 736, 1113
Kzo9I GATC 8 cut(s) 78, 156, 532, 638, 655, 736, 1036, 1113
Lsp1109I GCAGC 5 cut(s) 286, 289, 292, 928, 1025
LweI GCATC 4 cut(s) 115, 704, 1025, 1098
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 146, 872, 953, 975
MalI GATC 8 cut(s) 80, 158, 534, 640, 657, 738, 1038, 1115
MboI GATC 8 cut(s) 78, 156, 532, 638, 655, 736, 1036, 1113
MboII GAAGA 3 cut(s) 674, 811, 959
MflI RGATCY 2 cut(s) 78, 1036
MluCI AATT 9 cut(s) 199, 412, 650, 659, 688, 707, 771, 1003, 1185
Mly113I GGCGCC 1 cut(s) 1194
MlyI GAGTC 3 cut(s) 124, 766, 895
MmeI TCCRAC 1 cut(s) 976
Mph1103I ATGCAT 1 cut(s) 697
MseI TTAA 7 cut(s) 473, 494, 509, 633, 932, 1007, 1184
MslI CAYNNNNRTG 2 cut(s) 690, 962
MspA1I CMGCKG 2 cut(s) 1055, 1180
MspI CCGG 1 cut(s) 987
MspR9I CCNGG 2 cut(s) 76, 893
MvaI CCWGG 2 cut(s) 76, 893
MvnI CGCG 1 cut(s) 921
MwoI GCNNNNNNNGC 6 cut(s) 305, 314, 416, 810, 1022, 1166
NarI GGCGCC 1 cut(s) 1194
NcoI CCATGG 1 cut(s) 1040
NdeI CATATG 1 cut(s) 166
NdeII GATC 8 cut(s) 78, 156, 532, 638, 655, 736, 1036, 1113
NlaIII CATG 4 cut(s) 69, 581, 1044, 1078
NlaIV GGNNCC 3 cut(s) 343, 1038, 1195
NmuCI GTSAC 3 cut(s) 146, 953, 975
NsiI ATGCAT 1 cut(s) 697
PceI AGGCCT 1 cut(s) 626
PfeI GAWTC 3 cut(s) 56, 907, 1048
PkrI GCNGC 5 cut(s) 301, 304, 307, 918, 1015
PleI GAGTC 3 cut(s) 124, 765, 895
PluTI GGCGCC 1 cut(s) 1197
PpsI GAGTC 3 cut(s) 124, 765, 895
Psp6I CCWGG 2 cut(s) 74, 891
PspGI CCWGG 2 cut(s) 74, 891
PspN4I GGNNCC 3 cut(s) 343, 1038, 1195
PspPI GGNCC 1 cut(s) 844
PstI CTGCAG 1 cut(s) 855
PsuI RGATCY 2 cut(s) 78, 1036
PvuII CAGCTG 1 cut(s) 1055
RseI CAYNNNNRTG 2 cut(s) 690, 962
SaqAI TTAA 7 cut(s) 473, 494, 509, 633, 932, 1007, 1184
SatI GCNGC 5 cut(s) 300, 303, 306, 917, 1014
Sau3AI GATC 8 cut(s) 78, 156, 532, 638, 655, 736, 1036, 1113
Sau96I GGNCC 1 cut(s) 844
SchI GAGTC 3 cut(s) 124, 766, 895
ScrFI CCNGG 2 cut(s) 76, 893
SfaNI GCATC 4 cut(s) 115, 704, 1025, 1098
SfcI CTRYAG 3 cut(s) 192, 851, 1056
SfoI GGCGCC 1 cut(s) 1195
SinI GGWCC 1 cut(s) 844
SmiMI CAYNNNNRTG 2 cut(s) 690, 962
Sse9I AATT 9 cut(s) 199, 412, 650, 659, 688, 707, 771, 1003, 1185
SseBI AGGCCT 1 cut(s) 626
SsiI CCGC 3 cut(s) 768, 1070, 1180
SspDI GGCGCC 1 cut(s) 1193
SspI AATATT 1 cut(s) 7
StuI AGGCCT 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 74, 891
StyI CCWWGG 2 cut(s) 404, 1040
TaaI ACNGT 4 cut(s) 590, 939, 953, 1141
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 760, 1143
TasI AATT 9 cut(s) 199, 412, 650, 659, 688, 707, 771, 1003, 1185
TfiI GAWTC 3 cut(s) 56, 907, 1048
Tru1I TTAA 7 cut(s) 473, 494, 509, 633, 932, 1007, 1184
Tru9I TTAA 7 cut(s) 473, 494, 509, 633, 932, 1007, 1184
TscAI CASTG 5 cut(s) 535, 833, 958, 984, 1167
TseFI GTSAC 3 cut(s) 146, 953, 975
TseI GCWGC 5 cut(s) 299, 302, 305, 916, 1013
Tsp45I GTSAC 3 cut(s) 146, 953, 975
TspDTI ATGAA 5 cut(s) 17, 270, 566, 674, 1073
TspRI CASTG 5 cut(s) 535, 833, 958, 984, 1167
VpaK11BI GGWCC 1 cut(s) 844
XapI RAATTY 4 cut(s) 199, 650, 771, 1003
XmiI GTMKAC 2 cut(s) 115, 379
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.