Rroxscaffold_3G00220420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018092
Physical Location & Seq
Forward (+)
2635220 .. 2635777
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220420.1

Sequence Viewer

Length: 303 bp
ATGGAAGAGAGTGAAACCATAGGAGACTTCGCCGGAGCCCCGTCACCGGCCGCCGGAATCGGACCAACTTATGCGGGATTACGGTCACCGGTCGCAGGATTCGGGTCACCGGCTGCCACCCACCTGAATTTGCTAAAAATCTCACCGGAAATGTTTTTTTGCCCCGATAGACGTCTATTGCGGGACAATAGACGTCTATCGACCATGTACCTAGAAAATACTCGAGCACCCAAGTCAAGAGCCGGACCCAAACCACCGGATCGAAGCACCTCGGAGCTCACCGCCGACGTCTCTCACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.74

Weight (kDa)

7.95

Isoelectric Point (pI)

74.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018092)

Species Orthologous Gene IDs
malus_domestica MD13G1210300.v1.1
prunus_persica Prupe.3G302100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391461 RchiOBHm_Chr4g0391621
rosa_laevigata RLG00000021517
rosa_multiflora Rmu_sc0001174.1_g000015
rosa_roxburghii Rroxscaffold_3G00220420
rosa_samantha Rh2AG655400 Rh2BG627100 Rh2BG666600 Rh4AG038100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 175, 196, 291
AciI CCGC 4 cut(s) 51, 74, 181, 282
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 127
AcyI GRCGYC 3 cut(s) 172, 193, 288
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 46, 53, 95
AgeI ACCGGT 1 cut(s) 88
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw21I GWGCWC 2 cut(s) 229, 279
Alw26I GTCTC 2 cut(s) 18, 295
AlwI GGATC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 127
AsiGI ACCGGT 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 62, 245
AsuHPI GGTGA 6 cut(s) 36, 78, 99, 135, 271, 287
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 2 cut(s) 62, 245
BanII GRGCYC 2 cut(s) 40, 279
Bbv12I GWGCWC 2 cut(s) 229, 279
BbvI GCAGC 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 18, 295
BfaI CTAG 1 cut(s) 212
BisI GCNGC 2 cut(s) 51, 114
BlsI GCNGC 2 cut(s) 52, 115
Bme18I GGWCC 2 cut(s) 62, 245
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 2 cut(s) 62, 245
BmiI GGNNCC 2 cut(s) 37, 247
BsaHI GRCGYC 3 cut(s) 172, 193, 288
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 3 cut(s) 88, 145, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 53, 95
Bse118I RCCGGY 3 cut(s) 46, 88, 109
BseDI CCNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 3 cut(s) 46, 53, 95
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 100
Bsh1285I CGRYCG 2 cut(s) 51, 93
BshFI GGCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 88
BsiEI CGRYCG 2 cut(s) 51, 93
BsiHKAI GWGCWC 2 cut(s) 229, 279
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 8 cut(s) 33, 47, 54, 89, 110, 146, 243, 257
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 46, 53, 95
BsmAI GTCTC 2 cut(s) 18, 295
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 3 cut(s) 40, 229, 279
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 4 cut(s) 51, 74, 181, 282
BspANI GGCC 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 37, 247
BspPI GGATC 1 cut(s) 267
BsrFI RCCGGY 3 cut(s) 46, 88, 109
BssAI RCCGGY 3 cut(s) 46, 88, 109
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 259
BssNI GRCGYC 3 cut(s) 172, 193, 288
Bst4CI ACNGT 1 cut(s) 84
BstACI GRCGYC 3 cut(s) 172, 193, 288
BstEII GGTNACC 2 cut(s) 84, 105
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 2 cut(s) 18, 295
BstMBI GATC 1 cut(s) 259
BstMCI CGRYCG 2 cut(s) 51, 93
BstPI GGTNACC 2 cut(s) 84, 105
BstV1I GCAGC 1 cut(s) 100
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 50
Cfr10I RCCGGY 3 cut(s) 46, 88, 109
Cfr13I GGNCC 2 cut(s) 62, 245
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 1 cut(s) 205
CviJI RGCY 5 cut(s) 38, 50, 113, 242, 277
CviKI_1 RGCY 5 cut(s) 38, 50, 113, 242, 277
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 277
EclXI CGGCCG 1 cut(s) 48
Eco24I GRGCYC 2 cut(s) 40, 279
Eco47I GGWCC 2 cut(s) 62, 245
Eco52I CGGCCG 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 222
Eco91I GGTNACC 2 cut(s) 84, 105
EcoICRI GAGCTC 1 cut(s) 277
EcoO65I GGTNACC 2 cut(s) 84, 105
EcoT38I GRGCYC 2 cut(s) 40, 279
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 20, 72, 206
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 204
FauI CCCGC 2 cut(s) 67, 174
Fnu4HI GCNGC 2 cut(s) 51, 114
FriOI GRGCYC 2 cut(s) 40, 279
Fsp4HI GCNGC 2 cut(s) 51, 114
FspBI CTAG 1 cut(s) 212
GluI GCNGC 2 cut(s) 51, 114
HaeIII GGCC 1 cut(s) 50
HapII CCGG 8 cut(s) 33, 47, 54, 89, 110, 146, 243, 257
Hin1I GRCGYC 3 cut(s) 172, 193, 288
Hin1II CATG 1 cut(s) 208
HinfI GANTC 2 cut(s) 57, 99
HpaII CCGG 8 cut(s) 33, 47, 54, 89, 110, 146, 243, 257
HphI GGTGA 6 cut(s) 36, 78, 99, 135, 271, 287
Hpy188I TCNGA 2 cut(s) 62, 274
Hpy188III TCNNGA 1 cut(s) 237
Hpy99I CGWCG 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 3 cut(s) 172, 193, 288
HpySE526I ACGT 3 cut(s) 172, 193, 288
Hsp92I GRCGYC 3 cut(s) 172, 193, 288
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 35, 274
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 212
MaeII ACGT 3 cut(s) 172, 193, 288
MaeIII GTNAC 3 cut(s) 42, 84, 105
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 3 cut(s) 40, 229, 279
MluCI AATT 1 cut(s) 127
MnlI CCTC 1 cut(s) 280
MspI CCGG 8 cut(s) 33, 47, 54, 89, 110, 146, 243, 257
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 37, 247
NmuCI GTSAC 3 cut(s) 42, 84, 105
PaeR7I CTCGAG 1 cut(s) 222
PfeI GAWTC 2 cut(s) 57, 99
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 52, 115
Psp124BI GAGCTC 1 cut(s) 279
PspEI GGTNACC 2 cut(s) 84, 105
PspN4I GGNNCC 2 cut(s) 37, 247
PspPI GGNCC 2 cut(s) 62, 245
PspXI VCTCGAGB 1 cut(s) 222
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SacI GAGCTC 1 cut(s) 279
SatI GCNGC 2 cut(s) 51, 114
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 2 cut(s) 62, 245
SduI GDGCHC 3 cut(s) 40, 229, 279
SetI ASST 8 cut(s) 126, 175, 196, 213, 272, 279, 291, 300
Sfr274I CTCGAG 1 cut(s) 222
SinI GGWCC 2 cut(s) 62, 245
SlaI CTCGAG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 1 cut(s) 127
SsiI CCGC 4 cut(s) 51, 74, 181, 282
SspMI CTAG 1 cut(s) 212
SstI GAGCTC 1 cut(s) 279
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 3 cut(s) 175, 196, 291
TaqI TCGA 3 cut(s) 200, 223, 262
TasI AATT 1 cut(s) 127
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 57, 99
TseFI GTSAC 3 cut(s) 42, 84, 105
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 3 cut(s) 42, 84, 105
VpaK11BI GGWCC 2 cut(s) 62, 245
XapI RAATTY 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 222
XspI CTAG 1 cut(s) 212
ZraI GACGTC 3 cut(s) 173, 194, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.