Rh2BG627100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018092
Physical Location & Seq
Reverse (-)
84898536 .. 84899486
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG627100.1

Sequence Viewer

Length: 432 bp
ATGTCTCATTGGGGCAGAACTCGGGTTCGAGACTGCAATCGGAATTCTCGAGCAAAATCCGGCGATATCGAACTCGGTCATCGGCGCTCCTGCGTTCTCGAAGGCATCGAAGATTTTCTGGTCGCGGTTGAGGACGACTGCTGTCTGTTGTGCAAAACGGAGCTAAGCTCATTACCGGATCGCGTCCTCGGGTCCGACGGCGAGTTGAGGCTGCTGAAATATGAATGGGTTACCGCATTTGAGAACCAGAGGAAGAAGAAGCTAGAGTGGTCCAGGGTGAGCTTCTCCGATGTGTTGGATTCGGCCTGGTCGAAGGGGAAGAGAAAGAACACGGCGGTGGAGAGGGGGAGGAAAGCGACAGTTGTGGATATACTGAGGGAGTCTTCGGATAAGCCGATAAGCTTGGAAATTCCTTTATGTCCTAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.35

Weight (kDa)

8.95

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018092)

Species Orthologous Gene IDs
malus_domestica MD13G1210300.v1.1
prunus_persica Prupe.3G302100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391461 RchiOBHm_Chr4g0391621
rosa_laevigata RLG00000021517
rosa_multiflora Rmu_sc0001174.1_g000015
rosa_roxburghii Rroxscaffold_3G00220420
rosa_samantha Rh2AG655400 Rh2BG627100 Rh2BG666600 Rh4AG038100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 125, 183
AciI CCGC 3 cut(s) 125, 234, 335
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 2 cut(s) 43, 408
AjnI CCWGG 2 cut(s) 272, 305
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 5 cut(s) 163, 168, 262, 282, 402
AluI AGCT 5 cut(s) 163, 168, 262, 282, 402
Alw26I GTCTC 2 cut(s) 9, 24
AlwI GGATC 1 cut(s) 186
Ama87I CYCGRG 3 cut(s) 21, 48, 188
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 43, 408
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 192, 270
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 3 cut(s) 21, 48, 188
AvaII GGWCC 2 cut(s) 192, 270
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 198
BceAI ACGGC 2 cut(s) 214, 348
BciT130I CCWGG 2 cut(s) 274, 307
BcoDI GTCTC 2 cut(s) 9, 24
BfaI CTAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 2 cut(s) 274, 307
Bme18I GGWCC 2 cut(s) 192, 270
BmeT110I CYCGRG 3 cut(s) 21, 48, 188
BmgT120I GGNCC 2 cut(s) 192, 270
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 2 cut(s) 274, 307
BmsI GCATC 1 cut(s) 114
BoxI GACNNNNGTC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 375
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bpu1102I GCTNAGC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 187, 273
BsaWI WCCGGW 1 cut(s) 175
BseBI CCWGG 2 cut(s) 274, 307
BseDI CCNNGG 2 cut(s) 187, 273
BseMII CTCAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 198
Bsh1236I CGCG 2 cut(s) 125, 183
BshFI GGCC 1 cut(s) 305
BsiHKCI CYCGRG 3 cut(s) 21, 48, 188
BsiSI CCGG 2 cut(s) 60, 176
BsmAI GTCTC 2 cut(s) 9, 24
BsnI GGCC 1 cut(s) 305
BsoBI CYCGRG 3 cut(s) 21, 48, 188
Bsp143I GATC 1 cut(s) 178
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 3 cut(s) 125, 234, 335
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 366
BspFNI CGCG 2 cut(s) 125, 183
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 187, 273
BssMI GATC 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 274, 307
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 314
BstDEI CTNAG 2 cut(s) 164, 374
BstEII GGTNACC 1 cut(s) 229
BstFNI CGCG 2 cut(s) 125, 183
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 9, 24
BstMBI GATC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 274, 307
BstPAI GACNNNNGTC 1 cut(s) 141
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 272, 305
BstUI CGCG 2 cut(s) 125, 183
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 375
BsuRI GGCC 1 cut(s) 305
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 192, 270
CseI GACGC 1 cut(s) 172
CviJI RGCY 8 cut(s) 163, 168, 211, 262, 282, 305, 394, 402
CviKI_1 RGCY 8 cut(s) 163, 168, 211, 262, 282, 305, 394, 402
DdeI CTNAG 2 cut(s) 164, 374
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 192, 270
Eco88I CYCGRG 3 cut(s) 21, 48, 188
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 272, 305
EcoRV GATATC 1 cut(s) 67
FaiI YATR 3 cut(s) 222, 371, 418
Fnu4HI GCNGC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 305
HapII CCGG 2 cut(s) 60, 176
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 2 cut(s) 299, 380
HpaII CCGG 2 cut(s) 60, 176
HphI GGTGA 1 cut(s) 289
Hpy188I TCNGA 4 cut(s) 42, 196, 289, 388
Hpy188III TCNNGA 3 cut(s) 29, 48, 98
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 95, 307
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 36, 153
HpyF3I CTNAG 2 cut(s) 164, 374
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 92, 160
LpnPI CCDG 9 cut(s) 73, 103, 104, 189, 259, 260, 286, 292, 319
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 5 cut(s) 122, 265, 268, 331, 375
MluCI AATT 2 cut(s) 43, 408
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 219, 276
MnlI CCTC 7 cut(s) 124, 197, 201, 243, 336, 342, 369
MroXI GAANNNNTTC 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 2 cut(s) 60, 176
MspR9I CCNGG 2 cut(s) 274, 307
MvaI CCWGG 2 cut(s) 274, 307
MvnI CGCG 2 cut(s) 125, 183
NdeII GATC 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 193
OliI CACNNNNGTG 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 48
PcsI WCGNNNNNNNCGW 4 cut(s) 46, 105, 308, 392
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PshAI GACNNNNGTC 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 272, 305
PspEI GGTNACC 1 cut(s) 229
PspGI CCWGG 2 cut(s) 272, 305
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 192, 270
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 2 cut(s) 192, 270
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 274, 307
SetI ASST 5 cut(s) 165, 170, 264, 284, 404
SfaNI GCATC 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 48
SinI GGWCC 2 cut(s) 192, 270
SlaI CTCGAG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 2 cut(s) 43, 408
SsiI CCGC 3 cut(s) 125, 234, 335
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 272, 305
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 6 cut(s) 28, 49, 69, 99, 108, 311
TaqII GACCGA 1 cut(s) 65
TasI AATT 2 cut(s) 43, 408
TfiI GAWTC 1 cut(s) 299
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 192, 270
XapI RAATTY 2 cut(s) 43, 408
XhoI CTCGAG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.