Chloroplastic group IIA intron splicing facilitator CRS1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01370 |
| fragaria_vesca | FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 |
| malus_domestica | MD17G1040600.v1.1 |
| prunus_persica | Prupe.3G278400_v2.0.a1 |
| pyrus_communis | pycom17g03640 |
| rosa_chinensis | RchiOBHm_Chr2g0170301 |
| rosa_laevigata | RLG00000021945 |
| rosa_multiflora | Rmu_co8444867.1_g000001 Rmu_sc0012445.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00081450 |
| rosa_rugosa | Rorug02G0548100 |
| rosa_samantha | Rh2AG619400 Rh2BG630300 Rh2CG600400 Rh2DG643200 |
| rosa_wichuraiana | Rw2G051310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 412 |
| AccB1I | GGYRCC | 1 cut(s) | 349 |
| AccI | GTMKAC | 2 cut(s) | 1565, 1768 |
| AccII | CGCG | 2 cut(s) | 303, 1000 |
| AccIII | TCCGGA | 1 cut(s) | 123 |
| AclWI | GGATC | 3 cut(s) | 871, 2873, 2893 |
| AcoI | YGGCCR | 1 cut(s) | 465 |
| AcsI | RAATTY | 3 cut(s) | 113, 1352, 2473 |
| AcuI | CTGAAG | 7 cut(s) | 984, 1323, 1725, 2048, 2874, 2991, 3303 |
| AfaI | GTAC | 2 cut(s) | 299, 2384 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 280, 359, 365, 1040, 1143, 1762, 3101, 3219 |
| AflIII | ACRYGT | 1 cut(s) | 2633 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1533 |
| AhlI | ACTAGT | 1 cut(s) | 3452 |
| AjnI | CCWGG | 6 cut(s) | 943, 1066, 1496, 2881, 3375, 3427 |
| AleI | CACNNNNGTG | 1 cut(s) | 825 |
| Alw21I | GWGCWC | 8 cut(s) | 131, 254, 335, 889, 1830, 2245, 2344, 3264 |
| Alw44I | GTGCAC | 1 cut(s) | 3260 |
| AlwI | GGATC | 3 cut(s) | 871, 2873, 2893 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2225, 2672 |
| Ama87I | CYCGRG | 5 cut(s) | 200, 247, 1341, 3045, 3130 |
| Aor13HI | TCCGGA | 1 cut(s) | 123 |
| AoxI | GGCC | 4 cut(s) | 465, 995, 1979, 3042 |
| ApaLI | GTGCAC | 1 cut(s) | 3260 |
| ApeKI | GCWGC | 6 cut(s) | 195, 1108, 1211, 1574, 1577, 3467 |
| ApoI | RAATTY | 3 cut(s) | 113, 1352, 2473 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 255, 287, 646, 678 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1751, 2274 |
| AspLEI | GCGC | 2 cut(s) | 808, 2135 |
| AspS9I | GGNCC | 5 cut(s) | 363, 995, 1045, 1486, 3043 |
| AsuC2I | CCSGG | 6 cut(s) | 360, 367, 1508, 2468, 3046, 3047 |
| AsuHPI | GGTGA | 6 cut(s) | 11, 745, 812, 959, 2197, 2387 |
| AvaI | CYCGRG | 5 cut(s) | 200, 247, 1341, 3045, 3130 |
| AvaII | GGWCC | 3 cut(s) | 363, 1045, 1486 |
| BaeGI | GKGCMC | 2 cut(s) | 312, 3264 |
| BanI | GGYRCC | 1 cut(s) | 349 |
| BanII | GRGCYC | 3 cut(s) | 131, 254, 889 |
| BbsI | GAAGAC | 3 cut(s) | 219, 1529, 2430 |
| Bbv12I | GWGCWC | 8 cut(s) | 131, 254, 335, 889, 1830, 2245, 2344, 3264 |
| BbvCI | CCTCAGC | 2 cut(s) | 407, 494 |
| BbvI | GCAGC | 6 cut(s) | 207, 1120, 1198, 1564, 1586, 3454 |
| BceAI | ACGGC | 2 cut(s) | 1494, 3197 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3121, 3155 |
| BciT130I | CCWGG | 6 cut(s) | 945, 1068, 1498, 2883, 3377, 3429 |
| BciVI | GTATCC | 2 cut(s) | 756, 1064 |
| BcnI | CCSGG | 6 cut(s) | 360, 367, 1508, 2468, 3046, 3047 |
| BcuI | ACTAGT | 1 cut(s) | 3452 |
| BfaI | CTAG | 5 cut(s) | 1643, 2286, 2520, 2739, 3453 |
| BfmI | CTRYAG | 3 cut(s) | 315, 858, 1392 |
| BfuAI | ACCTGC | 1 cut(s) | 412 |
| BfuI | GTATCC | 2 cut(s) | 756, 1064 |
| BglII | AGATCT | 1 cut(s) | 3062 |
| BlpI | GCTNAGC | 3 cut(s) | 489, 888, 1869 |
| Bme18I | GGWCC | 3 cut(s) | 363, 1045, 1486 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1533 |
| BmeT110I | CYCGRG | 5 cut(s) | 200, 247, 1341, 3045, 3130 |
| BmgT120I | GGNCC | 5 cut(s) | 363, 995, 1045, 1486, 3043 |
| BmiI | GGNNCC | 6 cut(s) | 351, 357, 364, 1046, 2430, 3381 |
| BmsI | GCATC | 6 cut(s) | 310, 793, 805, 1813, 3283, 3529 |
| BpiI | GAAGAC | 3 cut(s) | 219, 1529, 2430 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2825, 2857, 3262, 3294 |
| BpmI | CTGGAG | 5 cut(s) | 349, 702, 1344, 1673, 3365 |
| Bpu10I | CCTNAGC | 4 cut(s) | 407, 494, 1113, 1724 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 489, 888, 1869 |
| BpuEI | CTTGAG | 3 cut(s) | 2264, 3170, 3527 |
| BpuMI | CCSGG | 6 cut(s) | 360, 367, 1508, 2468, 3046, 3047 |
| BsaI | GGTCTC | 4 cut(s) | 1072, 1987, 2393, 3127 |
| BsaJI | CCNNGG | 9 cut(s) | 199, 359, 998, 1605, 2432, 2466, 3045, 3375, 3546 |
| BsaWI | WCCGGW | 3 cut(s) | 123, 346, 811 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 236, 266, 675, 705, 2496, 2526 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 280, 359, 365, 1040, 1143, 1762, 3101, 3219 |
| Bse118I | RCCGGY | 1 cut(s) | 257 |
| Bse1I | ACTGG | 9 cut(s) | 685, 1327, 1581, 2422, 2666, 2872, 3089, 3241, 3348 |
| BseAI | TCCGGA | 1 cut(s) | 123 |
| BseBI | CCWGG | 6 cut(s) | 945, 1068, 1498, 2883, 3377, 3429 |
| BseDI | CCNNGG | 9 cut(s) | 199, 359, 998, 1605, 2432, 2466, 3045, 3375, 3546 |
| BseGI | GGATG | 9 cut(s) | 168, 693, 820, 1129, 2326, 2650, 2908, 2932, 3274 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 280, 359, 365, 1040, 1143, 1762, 3101, 3219 |
| BseNI | ACTGG | 9 cut(s) | 685, 1327, 1581, 2422, 2666, 2872, 3089, 3241, 3348 |
| BseRI | GAGGAG | 7 cut(s) | 22, 412, 424, 443, 1788, 2195, 2426 |
| BseSI | GKGCMC | 2 cut(s) | 312, 3264 |
| BseXI | GCAGC | 6 cut(s) | 207, 1120, 1198, 1564, 1586, 3454 |
| BseYI | CCCAGC | 3 cut(s) | 551, 1671, 1784 |
| BsgI | GTGCAG | 1 cut(s) | 3435 |
| Bsh1236I | CGCG | 2 cut(s) | 303, 1000 |
| BshFI | GGCC | 4 cut(s) | 467, 997, 1981, 3044 |
| BshNI | GGYRCC | 1 cut(s) | 349 |
| BsiHKAI | GWGCWC | 8 cut(s) | 131, 254, 335, 889, 1830, 2245, 2344, 3264 |
| BsiHKCI | CYCGRG | 5 cut(s) | 200, 247, 1341, 3045, 3130 |
| BslFI | GGGAC | 7 cut(s) | 257, 376, 1002, 1058, 1358, 1653, 1801 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 280, 359, 365, 1040, 1143, 1762, 3101, 3219 |
| BsmFI | GGGAC | 7 cut(s) | 257, 376, 1002, 1058, 1358, 1653, 1801 |
| BsnI | GGCC | 4 cut(s) | 467, 997, 1981, 3044 |
| Bso31I | GGTCTC | 4 cut(s) | 1072, 1987, 2393, 3127 |
| BsoBI | CYCGRG | 5 cut(s) | 200, 247, 1341, 3045, 3130 |
| Bsp1286I | GDGCHC | 9 cut(s) | 131, 254, 312, 335, 889, 1830, 2245, 2344, 3264 |
| Bsp13I | TCCGGA | 1 cut(s) | 123 |
| Bsp143I | GATC | 6 cut(s) | 599, 863, 1522, 2878, 2885, 3062 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 489, 888, 1869 |
| Bsp19I | CCATGG | 2 cut(s) | 1605, 2432 |
| BspANI | GGCC | 4 cut(s) | 467, 997, 1981, 3044 |
| BspEI | TCCGGA | 1 cut(s) | 123 |
| BspFNI | CGCG | 2 cut(s) | 303, 1000 |
| BspHI | TCATGA | 6 cut(s) | 388, 583, 658, 772, 2346, 2580 |
| BspLI | GGNNCC | 6 cut(s) | 351, 357, 364, 1046, 2430, 3381 |
| BspMAI | CTGCAG | 1 cut(s) | 1396 |
| BspMI | ACCTGC | 1 cut(s) | 412 |
| BspPI | GGATC | 3 cut(s) | 871, 2873, 2893 |
| BspQI | GCTCTTC | 1 cut(s) | 1407 |
| BspT107I | GGYRCC | 1 cut(s) | 349 |
| BspTNI | GGTCTC | 4 cut(s) | 1072, 1987, 2393, 3127 |
| BsrFI | RCCGGY | 1 cut(s) | 257 |
| BsrI | ACTGG | 9 cut(s) | 685, 1327, 1581, 2422, 2666, 2872, 3089, 3241, 3348 |
| BssAI | RCCGGY | 1 cut(s) | 257 |
| BssECI | CCNNGG | 9 cut(s) | 199, 359, 998, 1605, 2432, 2466, 3045, 3375, 3546 |
| BssMI | GATC | 6 cut(s) | 599, 863, 1522, 2878, 2885, 3062 |
| BssT1I | CCWWGG | 2 cut(s) | 1605, 2432 |
| Bst2UI | CCWGG | 6 cut(s) | 945, 1068, 1498, 2883, 3377, 3429 |
| Bst4CI | ACNGT | 4 cut(s) | 511, 2387, 3155, 3547 |
| Bst6I | CTCTTC | 9 cut(s) | 441, 644, 1299, 1307, 1407, 1701, 2265, 2632, 2848 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 854, 959, 3359 |
| BstDSI | CCRYGG | 4 cut(s) | 998, 1605, 2432, 3546 |
| BstF5I | GGATG | 9 cut(s) | 168, 693, 820, 1129, 2326, 2650, 2908, 2932, 3274 |
| BstFNI | CGCG | 2 cut(s) | 303, 1000 |
| BstHHI | GCGC | 2 cut(s) | 808, 2135 |
| BstKTI | GATC | 6 cut(s) | 602, 866, 1525, 2881, 2888, 3065 |
| BstMBI | GATC | 6 cut(s) | 599, 863, 1522, 2878, 2885, 3062 |
| BstNI | CCWGG | 6 cut(s) | 945, 1068, 1498, 2883, 3377, 3429 |
| BstNSI | RCATGY | 2 cut(s) | 1804, 3127 |
| BstSFI | CTRYAG | 3 cut(s) | 315, 858, 1392 |
| BstSLI | GKGCMC | 2 cut(s) | 312, 3264 |
| BstUI | CGCG | 2 cut(s) | 303, 1000 |
| BstV1I | GCAGC | 6 cut(s) | 207, 1120, 1198, 1564, 1586, 3454 |
| BstV2I | GAAGAC | 3 cut(s) | 219, 1529, 2430 |
| BstX2I | RGATCY | 2 cut(s) | 2885, 3062 |
| BstYI | RGATCY | 2 cut(s) | 2885, 3062 |
| BsuI | GTATCC | 2 cut(s) | 756, 1064 |
| BsuRI | GGCC | 4 cut(s) | 467, 997, 1981, 3044 |
| BtgI | CCRYGG | 4 cut(s) | 998, 1605, 2432, 3546 |
| BtsCI | GGATG | 9 cut(s) | 168, 693, 820, 1129, 2326, 2650, 2908, 2932, 3274 |
| BtsI | GCAGTG | 1 cut(s) | 1926 |
| BtsIMutI | CAGTG | 5 cut(s) | 832, 1926, 2024, 3096, 3160 |
| BveI | ACCTGC | 1 cut(s) | 412 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2225, 2672 |
| CciI | TCATGA | 6 cut(s) | 388, 583, 658, 772, 2346, 2580 |
| CfoI | GCGC | 2 cut(s) | 808, 2135 |
| Cfr10I | RCCGGY | 1 cut(s) | 257 |
| Cfr13I | GGNCC | 5 cut(s) | 363, 995, 1045, 1486, 3043 |
| Cfr42I | CCGCGG | 1 cut(s) | 1001 |
| Cfr9I | CCCGGG | 1 cut(s) | 3045 |
| CseI | GACGC | 2 cut(s) | 292, 2039 |
| Csp6I | GTAC | 2 cut(s) | 298, 2383 |
| CviQI | GTAC | 2 cut(s) | 298, 2383 |
| DpnI | GATC | 6 cut(s) | 601, 865, 1524, 2880, 2887, 3064 |
| DpnII | GATC | 6 cut(s) | 599, 863, 1522, 2878, 2885, 3062 |
| DraI | TTTAAA | 3 cut(s) | 2079, 2778, 3340 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1533 |
| EaeI | YGGCCR | 1 cut(s) | 465 |
| Eam1104I | CTCTTC | 9 cut(s) | 441, 644, 1299, 1307, 1407, 1701, 2265, 2632, 2848 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1533 |
| EarI | CTCTTC | 9 cut(s) | 441, 644, 1299, 1307, 1407, 1701, 2265, 2632, 2848 |
| EciI | GGCGGA | 5 cut(s) | 121, 154, 244, 610, 1076 |
| Ecl136II | GAGCTC | 3 cut(s) | 129, 252, 887 |
| Eco130I | CCWWGG | 2 cut(s) | 1605, 2432 |
| Eco24I | GRGCYC | 3 cut(s) | 131, 254, 889 |
| Eco31I | GGTCTC | 4 cut(s) | 1072, 1987, 2393, 3127 |
| Eco32I | GATATC | 1 cut(s) | 2217 |
| Eco47I | GGWCC | 3 cut(s) | 363, 1045, 1486 |
| Eco53kI | GAGCTC | 3 cut(s) | 129, 252, 887 |
| Eco57I | CTGAAG | 7 cut(s) | 984, 1323, 1725, 2048, 2874, 2991, 3303 |
| Eco88I | CYCGRG | 5 cut(s) | 200, 247, 1341, 3045, 3130 |
| EcoICRI | GAGCTC | 3 cut(s) | 129, 252, 887 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1045 |
| EcoRII | CCWGG | 6 cut(s) | 943, 1066, 1496, 2881, 3375, 3427 |
| EcoRV | GATATC | 1 cut(s) | 2217 |
| EcoT14I | CCWWGG | 2 cut(s) | 1605, 2432 |
| EcoT22I | ATGCAT | 1 cut(s) | 1806 |
| EcoT38I | GRGCYC | 3 cut(s) | 131, 254, 889 |
| ErhI | CCWWGG | 2 cut(s) | 1605, 2432 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1721, 1753, 2289, 2321, 3248, 3280, 3381, 3413 |
| FaqI | GGGAC | 7 cut(s) | 257, 376, 1002, 1058, 1358, 1653, 1801 |
| FauI | CCCGC | 4 cut(s) | 34, 48, 150, 753 |
| FblI | GTMKAC | 2 cut(s) | 1565, 1768 |
| FokI | GGATG | 9 cut(s) | 155, 700, 827, 1136, 2333, 2657, 2895, 2939, 3261 |
| FriOI | GRGCYC | 3 cut(s) | 131, 254, 889 |
| FspBI | CTAG | 5 cut(s) | 1643, 2286, 2520, 2739, 3453 |
| GlaI | GCGC | 2 cut(s) | 807, 2134 |
| GsaI | CCCAGC | 3 cut(s) | 555, 1675, 1788 |
| GsuI | CTGGAG | 5 cut(s) | 349, 702, 1344, 1673, 3365 |
| HaeIII | GGCC | 4 cut(s) | 467, 997, 1981, 3044 |
| HgaI | GACGC | 2 cut(s) | 292, 2039 |
| HhaI | GCGC | 2 cut(s) | 808, 2135 |
| Hin6I | GCGC | 2 cut(s) | 806, 2133 |
| HinP1I | GCGC | 2 cut(s) | 806, 2133 |
| HincII | GTYRAC | 2 cut(s) | 1039, 3013 |
| HindII | GTYRAC | 2 cut(s) | 1039, 3013 |
| HindIII | AAGCTT | 3 cut(s) | 1196, 2081, 2946 |
| HphI | GGTGA | 6 cut(s) | 11, 745, 812, 959, 2197, 2387 |
| Hpy166II | GTNNAC | 9 cut(s) | 736, 1005, 1039, 1566, 1769, 2188, 3013, 3262, 3518 |
| Hpy8I | GTNNAC | 9 cut(s) | 736, 1005, 1039, 1566, 1769, 2188, 3013, 3262, 3518 |
| Hpy99I | CGWCG | 2 cut(s) | 308, 2055 |
| HpyAV | CCTTC | 8 cut(s) | 32, 88, 541, 1058, 1100, 1688, 1723, 2966 |
| HpyCH4III | ACNGT | 4 cut(s) | 511, 2387, 3155, 3547 |
| HpyCH4IV | ACGT | 1 cut(s) | 2633 |
| HpySE526I | ACGT | 1 cut(s) | 2633 |
| HspAI | GCGC | 2 cut(s) | 806, 2133 |
| Kpn2I | TCCGGA | 1 cut(s) | 123 |
| KroI | GCCGGC | 1 cut(s) | 257 |
| KroNI | GCCGGC | 1 cut(s) | 259 |
| KspI | CCGCGG | 1 cut(s) | 1001 |
| Kzo9I | GATC | 6 cut(s) | 599, 863, 1522, 2878, 2885, 3062 |
| LguI | GCTCTTC | 1 cut(s) | 1407 |
| Lsp1109I | GCAGC | 6 cut(s) | 207, 1120, 1198, 1564, 1586, 3454 |
| LweI | GCATC | 6 cut(s) | 310, 793, 805, 1813, 3283, 3529 |
| MaeI | CTAG | 5 cut(s) | 1643, 2286, 2520, 2739, 3453 |
| MaeII | ACGT | 1 cut(s) | 2633 |
| MaeIII | GTNAC | 5 cut(s) | 2308, 2680, 2761, 2893, 3232 |
| MalI | GATC | 6 cut(s) | 601, 865, 1524, 2880, 2887, 3064 |
| MboI | GATC | 6 cut(s) | 599, 863, 1522, 2878, 2885, 3062 |
| MfeI | CAATTG | 4 cut(s) | 1791, 2111, 2898, 3006 |
| MflI | RGATCY | 2 cut(s) | 2885, 3062 |
| MhlI | GDGCHC | 9 cut(s) | 131, 254, 312, 335, 889, 1830, 2245, 2344, 3264 |
| MlyI | GAGTC | 9 cut(s) | 227, 280, 649, 1675, 1901, 2066, 2581, 2758, 3059 |
| MmeI | TCCRAC | 9 cut(s) | 196, 414, 648, 896, 2482, 2701, 2764, 2936, 3174 |
| Mph1103I | ATGCAT | 1 cut(s) | 1806 |
| MreI | CGCCGGCG | 1 cut(s) | 257 |
| MroI | TCCGGA | 1 cut(s) | 123 |
| MroNI | GCCGGC | 1 cut(s) | 257 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1751, 2274 |
| MslI | CAYNNNNRTG | 1 cut(s) | 825 |
| MspA1I | CMGCKG | 3 cut(s) | 327, 1000, 1577 |
| MunI | CAATTG | 4 cut(s) | 1791, 2111, 2898, 3006 |
| MvaI | CCWGG | 6 cut(s) | 945, 1068, 1498, 2883, 3377, 3429 |
| MvnI | CGCG | 2 cut(s) | 303, 1000 |
| NaeI | GCCGGC | 1 cut(s) | 259 |
| NciI | CCSGG | 6 cut(s) | 360, 367, 1508, 2468, 3046, 3047 |
| NcoI | CCATGG | 2 cut(s) | 1605, 2432 |
| NdeII | GATC | 6 cut(s) | 599, 863, 1522, 2878, 2885, 3062 |
| NgoMIV | GCCGGC | 1 cut(s) | 257 |
| NlaIV | GGNNCC | 6 cut(s) | 351, 357, 364, 1046, 2430, 3381 |
| NmeAIII | GCCGAG | 2 cut(s) | 208, 493 |
| NmuCI | GTSAC | 2 cut(s) | 2308, 2761 |
| NsiI | ATGCAT | 1 cut(s) | 1806 |
| NspI | RCATGY | 2 cut(s) | 1804, 3127 |
| OliI | CACNNNNGTG | 1 cut(s) | 825 |
| PaeR7I | CTCGAG | 1 cut(s) | 3130 |
| PagI | TCATGA | 6 cut(s) | 388, 583, 658, 772, 2346, 2580 |
| PciSI | GCTCTTC | 1 cut(s) | 1407 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 207, 213 |
| PdiI | GCCGGC | 1 cut(s) | 259 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1751, 2274 |
| PflFI | GACNNNGTC | 1 cut(s) | 2510 |
| PfoI | TCCNGGA | 3 cut(s) | 1496, 2881, 3427 |
| PleI | GAGTC | 9 cut(s) | 227, 280, 649, 1674, 1900, 2065, 2580, 2758, 3058 |
| PpsI | GAGTC | 9 cut(s) | 227, 280, 649, 1674, 1900, 2065, 2580, 2758, 3058 |
| PpuMI | RGGWCCY | 1 cut(s) | 1045 |
| Psp124BI | GAGCTC | 3 cut(s) | 131, 254, 889 |
| Psp5II | RGGWCCY | 1 cut(s) | 1045 |
| Psp6I | CCWGG | 6 cut(s) | 943, 1066, 1496, 2881, 3375, 3427 |
| PspFI | CCCAGC | 3 cut(s) | 551, 1671, 1784 |
| PspGI | CCWGG | 6 cut(s) | 943, 1066, 1496, 2881, 3375, 3427 |
| PspN4I | GGNNCC | 6 cut(s) | 351, 357, 364, 1046, 2430, 3381 |
| PspPI | GGNCC | 5 cut(s) | 363, 995, 1045, 1486, 3043 |
| PspPPI | RGGWCCY | 1 cut(s) | 1045 |
| PstI | CTGCAG | 1 cut(s) | 1396 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2225, 2672 |
| PsuI | RGATCY | 2 cut(s) | 2885, 3062 |
| PsyI | GACNNNGTC | 1 cut(s) | 2510 |
| PvuII | CAGCTG | 2 cut(s) | 327, 1577 |
| RsaI | GTAC | 2 cut(s) | 299, 2384 |
| RsaNI | GTAC | 2 cut(s) | 298, 2383 |
| RseI | CAYNNNNRTG | 1 cut(s) | 825 |
| SacI | GAGCTC | 3 cut(s) | 131, 254, 889 |
| SacII | CCGCGG | 1 cut(s) | 1001 |
| SapI | GCTCTTC | 1 cut(s) | 1407 |
| Sau3AI | GATC | 6 cut(s) | 599, 863, 1522, 2878, 2885, 3062 |
| Sau96I | GGNCC | 5 cut(s) | 363, 995, 1045, 1486, 3043 |
| SchI | GAGTC | 9 cut(s) | 227, 280, 649, 1675, 1901, 2066, 2581, 2758, 3059 |
| SduI | GDGCHC | 9 cut(s) | 131, 254, 312, 335, 889, 1830, 2245, 2344, 3264 |
| SfaNI | GCATC | 6 cut(s) | 310, 793, 805, 1813, 3283, 3529 |
| SfcI | CTRYAG | 3 cut(s) | 315, 858, 1392 |
| Sfr274I | CTCGAG | 1 cut(s) | 3130 |
| Sfr303I | CCGCGG | 1 cut(s) | 1001 |
| SgrAI | CRCCGGYG | 1 cut(s) | 257 |
| SgrBI | CCGCGG | 1 cut(s) | 1001 |
| SinI | GGWCC | 3 cut(s) | 363, 1045, 1486 |
| SlaI | CTCGAG | 1 cut(s) | 3130 |
| SmaI | CCCGGG | 1 cut(s) | 3047 |
| SmiI | ATTTAAAT | 1 cut(s) | 2778 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 825 |
| SmlI | CTYRAG | 4 cut(s) | 2279, 3130, 3185, 3506 |
| SmoI | CTYRAG | 4 cut(s) | 2279, 3130, 3185, 3506 |
| SpeI | ACTAGT | 1 cut(s) | 3452 |
| SspI | AATATT | 1 cut(s) | 3229 |
| SspMI | CTAG | 5 cut(s) | 1643, 2286, 2520, 2739, 3453 |
| SstI | GAGCTC | 3 cut(s) | 131, 254, 889 |
| StyI | CCWWGG | 2 cut(s) | 1605, 2432 |
| SwaI | ATTTAAAT | 1 cut(s) | 2778 |
| TaaI | ACNGT | 4 cut(s) | 511, 2387, 3155, 3547 |
| TaiI | ACGT | 1 cut(s) | 2636 |
| TaqI | TCGA | 2 cut(s) | 380, 3131 |
| TauI | GCSGC | 4 cut(s) | 137, 1000, 1390, 3497 |
| TscAI | CASTG | 5 cut(s) | 832, 1926, 2031, 3096, 3160 |
| TseFI | GTSAC | 2 cut(s) | 2308, 2761 |
| TseI | GCWGC | 6 cut(s) | 195, 1108, 1211, 1574, 1577, 3467 |
| Tsp45I | GTSAC | 2 cut(s) | 2308, 2761 |
| TspGWI | ACGGA | 2 cut(s) | 1086, 1136 |
| TspMI | CCCGGG | 1 cut(s) | 3045 |
| TspRI | CASTG | 5 cut(s) | 832, 1926, 2031, 3096, 3160 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2510 |
| VneI | GTGCAC | 1 cut(s) | 3260 |
| VpaK11BI | GGWCC | 3 cut(s) | 363, 1045, 1486 |
| XapI | RAATTY | 3 cut(s) | 113, 1352, 2473 |
| XceI | RCATGY | 2 cut(s) | 1804, 3127 |
| XhoI | CTCGAG | 1 cut(s) | 3130 |
| XmaI | CCCGGG | 1 cut(s) | 3045 |
| XmiI | GTMKAC | 2 cut(s) | 1565, 1768 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1751, 2274 |
| XspI | CTAG | 5 cut(s) | 1643, 2286, 2520, 2739, 3453 |
| Zsp2I | ATGCAT | 1 cut(s) | 1806 |